Clone Sequence Records
BO17555.3prime Sequence
785 bp (670 high quality bases) assembled on 2006-10-13
> BO17555.3prime
ATGGTCTAGAAAGCTTGCCTTCCTCACCGGCTTCACGGGCAGATAGGTAG
CCTGGGCATTGGTGCCGGTAGTCACGGTGCTGATCACCTGGCGCTGGCTG
CCCTCGGCATCATAGCTGGCTCCAGCATCCACGGTTGGAACTCCGCCGGT
GCCCACAATGTTCACGCTACCGCTGGCATCGGTCAACACTCCGGAGGCTC
CATTATCGCCCAGGCTACCGATCACGGAGGAAACGGGAATCACACCCTCG
TTGCTGGTCTCAGAGCTTCCACCCAGAGCATCATAGTTGGCCTGAATGGT
CTGCTGGGCATGGGCCGCCTCCTGAGGAGTCTTATACTTGACGAAGAACA
CCTCCGGCTTGTTGGCCACAGGGCGCTGAGTGACCACCTCGGCGGTGACA
TCCAGGGCATTAGACTTCTTGGACAGGACATAGATGGCAGTCTTCTCCTC
AACGGGCGCCACGTTGGCAATGATCTTGGCCTTGCTGGCGGTGGATGTGG
GAGCGTTGATGAAGACCACACGGTAGTTCTTCTGGGGCCTGCCCACATTC
ACATAGCGCACGATCTGCTGCTCATCGTGATCCTCGGGAGCACTGTGGAT
GTAGAAGTGCTTGTTGATCTGGGCGGGCTGGAAGTTGGCCAGATGGCTGA
TGTACGACTCCTGCTCGTTGTAGTTGATGGTGGGTCCGGGCTGCAGACCG
GCCAGGCCAATGTTATCGTTCACGATGCCACCGCCGACAGAGGAAGAGCC
CACTTGATAGCTGGACGAGCCAGAGCCGCCCACCT
BO17555.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32571-PA | 1041 | CG32571-RA | 272..1038 | 785..19 | 3810 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlX-RA | 1366 | CG32571-RA | 351..1117 | 785..19 | 3820 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16731509..16732003 | 785..291 | 2460 | 99.8 | Minus |
| X | 23542271 | X | 16732109..16732381 | 291..19 | 1365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:54:59 has no hits.
BO17555.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:48 Download gff for
BO17555.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32571-PA | 272..1041 | 18..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:16 Download gff for
BO17555.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlX-RA | 351..1117 | 19..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:34 Download gff for
BO17555.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlX-RA | 351..1117 | 19..785 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:34 Download gff for
BO17555.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16732110..16732381 | 19..290 | 100 | | Minus |
| X | 16731509..16732003 | 291..785 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:16 Download gff for
BO17555.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16625542..16626036 | 291..785 | 99 | -> | Minus |
| arm_X | 16626143..16626414 | 19..290 | 100 | | Minus |
BO17555.5prime Sequence
760 bp (696 high quality bases) assembled on 2006-10-13
> BO17555.5prime
GAAGTTATCAGTCGACATGAAGCAGTTTGTGGTTTTGGCCGTTCTGGCTG
TGATTGGCGGTTCCCTGGCCGCTCCTCGTCCGGATGTCAGCCATCTGGCG
GGATACAGCTACCAGGCTGGTGGTTACAATGGCAACCTGGTGGCCAATCA
GGTGCTCAGTGCTCCCTTGACCACGGTGACCACCTCGTACCAGCCCACGG
CAGCTGGTACCAACTACTACAGTTCGGCACCATCCATTGGTCAGCTTAAT
CTGGGCTCCTCCGGTTCTTCTGGTGTGGTCAACTACCAGGTGGGCGGCTC
TGGCTCGTCCAGCTATCAAGTGGGCTCCTCCTCTGTCGGCGGTGGCATCG
TGAACGATAACATTGGCCTGGCCGGTCTGCAGCCCGGACCCACCATCAAC
TACAACGAGCAGGAGTCGTACATCAGCCATCTGGCCAACTTCCAGCCCGC
CCAGATCAACAAGCACTTCTACATCCACAGTGCTCCCGAGGATCACGATG
AGCAGCAGATCGTGCGCTATGTGAATGTGGGCAGGCCCCAGAAGAACTAC
CGTGTGGTCTTCATCAACGCTCCCACATCCACCGCCAGCAAGGCCAAGAT
CATTGCCAACGTGGCGCCCGTTGAGGAGAAGACTGCCATCTATGTCCTGT
CCAAGAAGTCTAATGCCCTGGATGTCACCGCCGAGGTGGTCACTCAGCGC
CCTGTGGCCCACAAGCCGGAGGTGTTCTTCGTCAAGTATAAGACTCCTCA
GGAGGCGGCC
BO17555.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32571-PA | 1041 | CG32571-RA | 1..744 | 17..760 | 3695 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlX-RA | 1366 | CG32571-RA | 78..823 | 15..760 | 3715 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16731252..16731981 | 31..760 | 3635 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:38:55 has no hits.
BO17555.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:48 Download gff for
BO17555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32571-PA | 1..744 | 17..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:27:13 Download gff for
BO17555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlX-RA | 67..823 | 6..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:27 Download gff for
BO17555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlX-RA | 67..823 | 6..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:27 Download gff for
BO17555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16731253..16731981 | 32..760 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:27:13 Download gff for
BO17555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16625286..16626014 | 32..760 | 99 | | Plus |
BO17555.complete Sequence
1072 bp assembled on 2006-10-11
GenBank Submission: FJ634172
> BO17555.complete
GAAGTTATCAGTCGACATGAAGCAGTTTGTGGTTTTGGCCGTTCTGGCTG
TGATTGGCGGTTCCCTGGCCGCTCCTCGTCCGGATGTCAGCCATCTGGCG
GGATACAGCTACCAGGCTGGTGGTTACAATGGCAACCTGGTGGCCAATCA
GGTGCTCAGTGCTCCCTTGACCACGGTGACCACCTCGTACCAGCCCACGG
CAGCTGGTACCAACTACTACAGTTCGGCACCATCCATTGGTCAGCTTAAT
CTGGGCTCCTCCGGTTCTTCTGGTGTGGTCAACTACCAGGTGGGCGGCTC
TGGCTCGTCCAGCTATCAAGTGGGCTCCTCCTCTGTCGGCGGTGGCATCG
TGAACGATAACATTGGCCTGGCCGGTCTGCAGCCCGGACCCACCATCAAC
TACAACGAGCAGGAGTCGTACATCAGCCATCTGGCCAACTTCCAGCCCGC
CCAGATCAACAAGCACTTCTACATCCACAGTGCTCCCGAGGATCACGATG
AGCAGCAGATCGTGCGCTATGTGAATGTGGGCAGGCCCCAGAAGAACTAC
CGTGTGGTCTTCATCAACGCTCCCACATCCACCGCCAGCAAGGCCAAGAT
CATTGCCAACGTGGCGCCCGTTGAGGAGAAGACTGCCATCTATGTCCTGT
CCAAGAAGTCTAATGCCCTGGATGTCACCGCCGAGGTGGTCACTCAGCGC
CCTGTGGCCAACAAGCCGGAGGTGTTCTTCGTCAAGTATAAGACTCCTCA
GGAGGCGGCCCATGCCCAGCAGACCATTCAGGCCAACTATGATGCTCTGG
GTGGAAGCTCTGAGACCAGCAACGAGGGTGTGATTCCCGTTTCCTCCGTG
ATCGGTAGCCTGGGCGATAATGGAGCCTCCGGAGTGTTGACCGATGCCAG
CGGTAGCGTGAACATTGTGGGCACCGGCGGAGTTCCAACCGTGGATGCTG
GAGCCAGCTATGATGCCGAGGGCAGCCAGCGCCAGGTGATCAGCACCGTG
ACTACCGGCACCAATGCCCAGGCTACCTATCTGCCCGTGAAGCCGGTGAG
GAAGGCAAGCTTTCTAGACCAT
BO17555.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:45:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlX-RA | 1041 | CG32571-PA | 1..1038 | 17..1054 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlX-RA | 1366 | CG32571-RA | 78..1117 | 15..1054 | 5200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:45:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16731252..16732003 | 31..782 | 3760 | 100 | Plus |
| X | 23542271 | X | 16732109..16732381 | 782..1054 | 1365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:45:50 has no hits.
BO17555.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:18 Download gff for
BO17555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlX-RA | 1..1041 | 17..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:14 Download gff for
BO17555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlX-RA | 1..1041 | 17..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:01 Download gff for
BO17555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlX-RA | 80..1117 | 17..1056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:19 Download gff for
BO17555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlX-RA | 1..1041 | 17..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:18 Download gff for
BO17555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlX-RA | 80..1117 | 17..1056 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:18 Download gff for
BO17555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16731253..16732003 | 32..782 | 100 | -> | Plus |
| X | 16732110..16732381 | 783..1056 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:01 Download gff for
BO17555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16625286..16626036 | 32..782 | 100 | -> | Plus |
| arm_X | 16626143..16626414 | 783..1056 | 99 | | Plus |
BO17555.pep Sequence
Translation from 16 to 1072
> BO17555.pep
MKQFVVLAVLAVIGGSLAAPRPDVSHLAGYSYQAGGYNGNLVANQVLSAP
LTTVTTSYQPTAAGTNYYSSAPSIGQLNLGSSGSSGVVNYQVGGSGSSSY
QVGSSSVGGGIVNDNIGLAGLQPGPTINYNEQESYISHLANFQPAQINKH
FYIHSAPEDHDEQQIVRYVNVGRPQKNYRVVFINAPTSTASKAKIIANVA
PVEEKTAIYVLSKKSNALDVTAEVVTQRPVANKPEVFFVKYKTPQEAAHA
QQTIQANYDALGGSSETSNEGVIPVSSVIGSLGDNGASGVLTDASGSVNI
VGTGGVPTVDAGASYDAEGSQRQVISTVTTGTNAQATYLPVKPVRKASFL
DH
BO17555.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlX-PA | 346 | CG32571-PA | 1..346 | 1..346 | 1747 | 100 | Plus |
| Twdlalpha-PA | 388 | CG32574-PA | 42..352 | 14..330 | 447 | 39.2 | Plus |
| TwdlV-PA | 251 | CG14640-PA | 21..248 | 89..340 | 406 | 40.9 | Plus |
| TwdlY-PA | 247 | CG32570-PA | 35..213 | 96..282 | 378 | 45.7 | Plus |
| TwdlG-PC | 278 | CG14643-PC | 69..258 | 93..290 | 352 | 43.5 | Plus |
