Clone Sequence Records
BO17565.3prime Sequence
802 bp (674 high quality bases) assembled on 2006-10-13
> BO17565.3prime
ATGGTCTAGAAAGCTTGCATCAAAATAGTCTTCAATGTCAATGTCGGGAT
TAAGAATATCATCGCCATAGGGCTCCAAATCAATGCCGTTCAGGATGAGG
TTCTCGCAGGTCTCTGCGAGATCAGTGTTGCCGATTAGCATTGCTCCCCG
TAGTCTGCCATTTTGAAGCACAAACTTGATGTATTCCTTATTTCTCGTGC
AGCGCACCAGAATTTCGTAGTCCCTGCCCAAATCCTGACCATTAAAGCGT
CCCAGCAGGACAACAGGATATCCGAAAAGTTTGGTTACGTGGCCAAAGAG
CTCGAAGCAGAAATCCTGGTACACGCTTTCACCTTCACTGGCAGCCGCCA
TACTCCTGCCCGCCATGGAGCCCATTTGGCGAGCCTGAGTCCACAGGCGC
ATCTGGAACCAGTGCATTGCGGCTGGCCAGTTGGCCGTGCACACATCACC
GGCCGCAAAGACATCCACCAGATTCGTACGCATCATTTCATCCACCGATA
TGCCACCATCGTCGGAAAATTGAAGTGGCGAATCACACGTGTAGTCGGTA
TTCGGCCAAACTCCCGTTGCGGAAACAATAAAGTCACAGGTCAACTGCTG
AAAGCTCCCATCCTCATGCTCCAACTTGACTATAGCACCTGCGTCGTCGG
CGAGATCCTGAACGCTGCTTATGCGAGATTTGTAATAGATCTTTGGTAGG
CGGTTCTCTTCCCCTTCACGTGCTCCACTCAAGTCGACGCTGCGATGCCA
GTCCGGACCCAATGCAGCTCCATGGTTGTTAGTCTGCTCCTTGGGCAGCA
CT
BO17565.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10721-PA | 1419 | CG10721-RA | 633..1416 | 802..19 | 3920 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:06:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10721-RB | 1572 | CG10721-RB | 745..1528 | 802..19 | 3920 | 100 | Minus |
| CG10721-RA | 1541 | CG10721-RA | 714..1497 | 802..19 | 3920 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20092325..20093108 | 802..19 | 3920 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:06:58 has no hits.
BO17565.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:00 Download gff for
BO17565.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10721-PA | 633..1419 | 18..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:35:01 Download gff for
BO17565.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10721-RA | 714..1503 | 10..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:47 Download gff for
BO17565.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10721-RA | 714..1503 | 10..802 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:47 Download gff for
BO17565.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20092325..20093114 | 10..802 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:35:01 Download gff for
BO17565.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20092325..20093114 | 10..802 | 99 | | Minus |
BO17565.5prime Sequence
742 bp (724 high quality bases) assembled on 2006-10-13
> BO17565.5prime
GAAGTTATCAGTCGACATGTCGCGGAAGTGCGAGTTCCTGGTGGTCGGTG
GAGGTATTGCTGGCGTCAGCTGCGCCGAGTCCCTGGCCATCTACCGACCC
AATGCCTCCATTCTACTGCTCACGGAGTCCAGCATCGTGAAGAGTGTGAC
CAATTTGGTGCCGGTGGCTCGCTATCTGCATAAGTTCGACGTTCGGGAAC
AGGATGTCTCCGAAATGGGAGCTAGTTTTCAGACACTAGTGGATCGCCTG
GATCACATCAACAGCAGGGAGCATTGCATCCGCACTAAAGCGGGTCTGGA
GATCAAGTATCGCTATTTGTGCCTCTGCACCGGTGGAACACCCAAATTGT
TCTCCGGCAAAGTAGTAAATCCCCTTGTCATTGGCATTCGGGACACGGAC
TCTGTACAGCTGCTGCAGCGAAAGTTGGCGACAGCTAAGGATGTCCTGAT
TTTGGGCAATGGCGGCATTGCCAGTGAGTTGGCCTACGAGCTGAAGGATG
TAAATGTCCACTGGGTGGTTAAAGATTCTCACATCTCGGCCACATTTGTG
GATCCCGGAGCAGCCGAGTTCTTTCACATAGCCATGAATGAATGTAATGC
GAAGGATTCCTCTCCGGTTGTGGCTATTAAGCGAATGCGGTACAGTGAAG
TGCTGCCCAAGGAGCAGACTAACAACCATGGAGCTGCATTGGGTCCGGAC
TGGCATCGCAGCGTCGACTTGAGTGGAGCACGTGAAGGGGAA
BO17565.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10721-PA | 1419 | CG10721-RA | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10721-RB | 1572 | CG10721-RB | 113..838 | 17..742 | 3630 | 100 | Plus |
| CG10721-RA | 1541 | CG10721-RA | 82..807 | 17..742 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:57:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20091693..20092418 | 17..742 | 3630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:57:47 has no hits.
BO17565.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:01 Download gff for
BO17565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10721-PA | 1..724 | 17..740 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:46 Download gff for
BO17565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10721-RA | 82..807 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:59:40 Download gff for
BO17565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10721-RA | 82..807 | 17..742 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:59:40 Download gff for
BO17565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20091693..20092418 | 17..742 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:46 Download gff for
BO17565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20091693..20092418 | 17..742 | 100 | | Plus |
BO17565.complete Sequence
1450 bp assembled on 2006-10-11
GenBank Submission: FJ638754
> BO17565.complete
GAAGTTATCAGTCGACATGTCGCGGAAGTGCGAGTTCCTGGTGGTCGGTG
GAGGTATTGCTGGCGTCAGCTGCGCCGAGTCCCTGGCCATCTACCGACCC
AATGCCTCCATTCTACTGCTCACGGAGTCCAGCATCGTGAAGAGTGTGAC
CAATTTGGTGCCGGTGGCTCGCTATCTGCATAAGTTCGACGTTCGGGAAC
AGGATGTCTCCGAAATGGGAGCTAGTTTTCAGACACTAGTGGATCGCCTG
GATCACATCAACAGCAGGGAGCATTGCATCCGCACTAAAGCGGGTCTGGA
GATCAAGTATCGCTATTTGTGCCTCTGCACCGGTGGAACACCCAAATTGT
TCTCCGGCAAAGTAGTAAATCCCCTTGTCATTGGCATTCGGGACACGGAC
TCTGTACAGCTGCTGCAGCGAAAGTTGGCGACAGCTAAGGATGTCCTGAT
TTTGGGCAATGGCGGCATTGCCAGTGAGTTGGCCTACGAGCTGAAGGATG
TAAATGTCCACTGGGTGGTTAAAGATTCTCACATCTCGGCCACATTTGTG
GATCCCGGAGCAGCCGAGTTCTTTCACATAGCCATGAATGAATGTAATGC
GAAGGATTCCTCTCCGGTTGTGGCTATTAAGCGAATGCGGTACAGTGAAG
TGCTGCCCAAGGAGCAGACTAACAACCATGGAGCTGCATTGGGTCCGGAC
TGGCATCGCAGCGTCGACTTGAGTGGAGCACGTGAAGGGGAAGAGAACCG
CCTACCAAAGATCTATTACAAATCTCGCATAAGCAGCGTTCAGGATCTCG
CCGACGACGCAGGTGCTATAGTCAAGTTGGAGCATGAGGATGGGAGCTTT
CAGCAGTTGACCTGTGACTTTATTGTTTCCGCAACGGGAGTTTGGCCGAA
TACCGACTACACGTGTGATTCGCCACTTCAATTTTCCGACGATGGTGGCA
TATCGGTGGATGAAATGATGCGTACGAATCTGGTGGATGTCTTTGCGGCC
GGTGATGTGTGCACGGCCAACTGGCCAGCCGCAATGCACTGGTTCCAGAT
GCGCCTGTGGACTCAGGCTCGCCAAATGGGCTCCATGGCGGGCAGGAGTA
TGGCGGCTGCCAGTGAAGGTGAAAGCGTGTACCAGGATTTCTGCTTCGAG
CTCTTTGGCCACGTAACCAAACTTTTCGGATATCCTGTTGTCCTGCTGGG
ACGCTTTAATGGTCAGGATTTGGGCAGGGACTACGAAATTCTGGTGCGCT
GCACGAGAAATAAGGAATACATCAAGTTTGTGCTTCAAAATGGCAGACTA
CGGGGAGCAATGCTAATCGGCAACACTGATCTCGCAGAGACCTGCGAGAA
CCTCATCCTGAACGGCATTGATTTGGAGCCCTATGGCGATGATATTCTTA
ATCCCGACATTGACATTGAAGACTATTTTGATGCAAGCTTTCTAGACCAT
BO17565.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10721-RB | 1419 | CG10721-PB | 1..1416 | 17..1432 | 7080 | 100 | Plus |
| CG10721-RA | 1419 | CG10721-PA | 1..1416 | 17..1432 | 7080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10721-RB | 1572 | CG10721-RB | 113..1528 | 17..1432 | 7080 | 100 | Plus |
| CG10721-RA | 1541 | CG10721-RA | 82..1497 | 17..1432 | 7080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20091693..20093108 | 17..1432 | 7080 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:08:32 has no hits.
BO17565.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:05 Download gff for
BO17565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10721-RA | 1..1419 | 17..1433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:50 Download gff for
BO17565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10721-RA | 1..1419 | 17..1433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:13 Download gff for
BO17565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10721-RA | 82..1497 | 17..1434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:05 Download gff for
BO17565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10721-RA | 1..1419 | 17..1433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:42 Download gff for
BO17565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10721-RA | 82..1497 | 17..1434 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:42 Download gff for
BO17565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20091693..20093108 | 17..1434 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:13 Download gff for
BO17565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20091693..20093108 | 17..1434 | 99 | | Plus |
BO17565.pep Sequence
Translation from 16 to 1450
> BO17565.pep
MSRKCEFLVVGGGIAGVSCAESLAIYRPNASILLLTESSIVKSVTNLVPV
ARYLHKFDVREQDVSEMGASFQTLVDRLDHINSREHCIRTKAGLEIKYRY
LCLCTGGTPKLFSGKVVNPLVIGIRDTDSVQLLQRKLATAKDVLILGNGG
IASELAYELKDVNVHWVVKDSHISATFVDPGAAEFFHIAMNECNAKDSSP
VVAIKRMRYSEVLPKEQTNNHGAALGPDWHRSVDLSGAREGEENRLPKIY
YKSRISSVQDLADDAGAIVKLEHEDGSFQQLTCDFIVSATGVWPNTDYTC
DSPLQFSDDGGISVDEMMRTNLVDVFAAGDVCTANWPAAMHWFQMRLWTQ
ARQMGSMAGRSMAAASEGESVYQDFCFELFGHVTKLFGYPVVLLGRFNGQ
DLGRDYEILVRCTRNKEYIKFVLQNGRLRGAMLIGNTDLAETCENLILNG
IDLEPYGDDILNPDIDIEDYFDASFLDH
BO17565.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10721-PB | 472 | CG10721-PB | 1..472 | 1..472 | 2472 | 100 | Plus |
| CG10721-PA | 472 | CG10721-PA | 1..472 | 1..472 | 2472 | 100 | Plus |
