Clone BO17569 Report

Search the DGRC for BO17569

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:175
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG14606-RA
Protein status:BO17569.pep: validated full length
Sequenced Size:1348

Clone Sequence Records

BO17569.3prime Sequence

897 bp (758 high quality bases) assembled on 2006-10-13

> BO17569.3prime
ATGGTCTAGAAAGCTTGCGTGCGTCATCAGCTTTCCTTTGGTCTCTGGCA
GAAACAGTCCCAAGACAATGAATCCGAATAGGCACATGCCCGCCGACATG
AACATGGTGGCAGCCAGGCCCTGATCGTAGATCATTGTGGGGTAGATCTT
TAGAGCCACGAAGATAAATCCGCTAAATGTGGCCATGCTCAAGGAGGTGC
CAATGGAGCGGATCTTAGCTGGGAGCAGCTCAATAATGATGATGAAGATC
AGGGCTATAACTCCTAGTGAAGCAATGCAGGCCACAAGGCACATGATCAC
CAAAGGAAGCCATCCATTCTGGTTCAGAAACTCATCCGATGCGAAGCACT
TGAGCAGAGCAATTGCCAGCTCACCCAAACCCATTCCACCCATTGAGGTG
AGGAGCAGAACACGACGACCCAGTCTGTCCACTAGGACGACAGCACTGAA
GATTCCCACCAGCTGTGCAGCTCCGACCACAATGGTGCTGGTGTTTGGAT
CCAGATTGTTGCCTAGCTCAGCAAAAATGTGCGATGTGTAGTTGAAGATG
GCGAAGCTCCCTGACAGCTGATTGCAGATGATCAGTACAAAGATGAGGCC
GAATATCTTTAGTGTAGGCACGTTAATGAAATCCCGCCAAGAAATGCTCT
CGGTGACGCCGCCACTGAGCACCTGAAGCCGAAATGTGTCAAACTCAATT
TTAGCTGCGTCATGCTGAGAAGCTTCCTTGTCGGAGGAAGTGGGTGGTGT
CAGGTTCTTGTAGAAGTAGAAAGACTTCTCGGCCTGGTCATCGCGCCCTC
GTCTCAACAAATATTGCGGTGTCTCCGATAAGCCAATAACTGACAACATA
AACACACCGGCAGAGCAACGATAATGCACGGCATCAGATAGTACGGG

BO17569.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14606-PA 1317 CG14606-RA 478..1314 855..19 4185 100 Minus
CG14606-PA 1317 CG14606-RA 435..477 897..855 215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14606-RB 1863 CG14606-RB 584..1463 897..19 4375 99.9 Minus
CG14606-RA 1925 CG14606-RA 646..1525 897..19 4375 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7215029..7215441 214..626 2065 100 Plus
3R 32079331 3R 7215505..7215776 627..897 1310 99.6 Plus
3R 32079331 3R 7214739..7214935 19..215 985 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:55:18 has no hits.

BO17569.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:06 Download gff for BO17569.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14606-PA 435..1317 16..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:21 Download gff for BO17569.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14606-RA 646..1525 19..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:37 Download gff for BO17569.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14606-RA 646..1525 19..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:37 Download gff for BO17569.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7215505..7215776 627..897 99   Plus
3R 7214739..7214933 19..213 100 <- Plus
3R 7215029..7215441 214..626 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:21 Download gff for BO17569.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3040461..3040655 19..213 100 <- Plus
arm_3R 3040751..3041163 214..626 100 <- Plus
arm_3R 3041227..3041498 627..897 99   Plus

BO17569.5prime Sequence

862 bp (837 high quality bases) assembled on 2006-10-13

> BO17569.5prime
GAAGTTATCAGTCGACATGACACTGACCCATGGAATTGCCGTGGGATGGC
TGTCTCCCTCTCTTCGACTGCTCGCATCCGACGAAAGCCCTTTGGGGGAT
CCCCTGACCATTACCCAGGCATCCTGGGTTGGATCACTTATCGGCCTAGG
CTCGCTGACCGGCAATATAATCTTTGGACTGCTACTCGATCGATTGGGCC
GTAAAGTGTGCATGTATTTCCTGGCCATACCCAATATGATCTACTGGATC
CTTATCTACTCCGCCCAAGACGTTACGTATCTGTATGCTGGTCGATTCCT
GGCGGGAATGTCCGGAGGTGGCTGTTACGTCGTCTTGCCCATATTCATAG
CTGAAATAGCCGACAATAGCGTTCGGGGAGCGTTATCGTCCATGGCCATG
ATGTACGTTAGCATCGGCATGATGGTTGGCTTTACATTAGCCTCGTATCT
CCCGTACTATCTGATGCCGTGCATTATCGTTGCTCTGCCGGTGGTGTTTA
TGTTGTCAGTTATTGGCTTATCGGAGACACCGCAATATTTGTTGAGACGA
GGGCGCGATGACCAGGCCGAGAAGTCTTTCTACTTCTACAAGAACCTGAC
ACCACCCACTTCCTCCGACAAGGAAGCTTCTCAGCATGACGCAGCTAANA
TTGAGTTTGACACATTTCGGCTTCAGGTGCTCAGTGGCGGCGTCACCGAG
AGCATTTCTTGGCGGGATTTCATTAACGTGCCTACACTAAAGATATTCGG
CCTCATCTTTGTACTGATCATCTGCAATCAGCTGTCAGGGAGCTTCGCCA
TCTTCAACTACACATCGCACATTTTTGCTGAGCTAGGCAACAATCTGGAT
CCAAACACCAGC

BO17569.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14606-PA 1317 CG14606-RA 1..846 17..862 4211 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14606-RB 1863 CG14606-RB 150..995 17..862 4219 99.9 Plus
CG14606-RA 1925 CG14606-RA 212..1057 17..862 4219 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7215505..7215859 722..368 1764 99.7 Minus
3R 32079331 3R 7215302..7215441 862..723 700 100 Minus
3R 32079331 3R 7216383..7216514 369..238 660 100 Minus
3R 32079331 3R 7216592..7216704 238..126 565 100 Minus
3R 32079331 3R 7216762..7216872 127..17 555 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:56:37 has no hits.

BO17569.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:07 Download gff for BO17569.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14606-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:53 Download gff for BO17569.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14606-RA 212..1057 17..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:52 Download gff for BO17569.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14606-RA 212..1057 17..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:52 Download gff for BO17569.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7215302..7215441 723..862 100 <- Minus
3R 7215505..7215857 370..722 99 <- Minus
3R 7216383..7216513 239..369 100 <- Minus
3R 7216592..7216703 127..238 100 <- Minus
3R 7216763..7216872 17..126 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:53 Download gff for BO17569.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3041024..3041163 723..862 100 <- Minus
arm_3R 3041227..3041579 370..722 99 <- Minus
arm_3R 3042105..3042235 239..369 100 <- Minus
arm_3R 3042314..3042425 127..238 100 <- Minus
arm_3R 3042485..3042594 17..126 100   Minus

BO17569.complete Sequence

1348 bp assembled on 2006-10-11

GenBank Submission: FJ634174

> BO17569.complete
GAAGTTATCAGTCGACATGACACTGACCCATGGAATTGCCGTGGGATGGC
TGTCTCCCTCTCTTCGACTGCTCGCATCCGACGAAAGCCCTTTGGGGGAT
CCCCTGACCATTACCCAGGCATCCTGGGTTGGATCACTTATCGGCCTAGG
CTCGCTGACCGGCAATATAATCTTTGGACTGCTACTCGATCGATTGGGCC
GTAAAGTGTGCATGTATTTCCTGGCCATACCCAATATGATCTACTGGATC
CTTATCTACTCCGCCCAAGACGTTACGTATCTGTATGCTGGTCGATTCCT
GGCGGGAATGTCCGGAGGTGGCTGTTACGTCGTCTTGCCCATATTCATAG
CTGAAATAGCCGACAATAGCGTTCGGGGAGCGTTATCGTCCATGGCCATG
ATGTACGTTAGCATCGGCATGATGGTTGGCTTTACATTAGCCTCGTATCT
CCCGTACTATCTGATGCCGTGCATTATCGTTGCTCTGCCGGTGGTGTTTA
TGTTGTCAGTTATTGGCTTATCGGAGACACCGCAATATTTGTTGAGACGA
GGGCGCGATGACCAGGCCGAGAAGTCTTTCTACTTCTACAAGAACCTGAC
ACCACCCACTTCCTCCGACAAGGAAGCTTCTCAGCATGACGCAGCTAAAA
TTGAGTTTGACACATTTCGGCTTCAGGTGCTCAGTGGCGGCGTCACCGAG
AGCATTTCTTGGCGGGATTTCATTAACGTGCCTACACTAAAGATATTCGG
CCTCATCTTTGTACTGATCATCTGCAATCAGCTGTCAGGGAGCTTCGCCA
TCTTCAACTACACATCGCACATTTTTGCTGAGCTAGGCAACAATCTGGAT
CCAAACACCAGCACCATTGTGGTCGGAGCTGCACAGCTGGTGGGAATCTT
CAGTGCTGTCGTCCTAGTGGACAGACTGGGTCGTCGTGTTCTGCTCCTCA
CCTCAATGGGTGGAATGGGTTTGGGTGAGCTGGCAATTGCTCTGCTCAAG
TGCTTCGCATCGGATGAGTTTCTGAACCAGAATGGATGGCTTCCTTTGGT
GATCATGTGCCTTGTGGCCTGCATTGCTTCACTAGGAGTTATAGCCCTGA
TCTTCATCATCATTATTGAGCTGCTCCCAGCTAAGATCCGCTCCATTGGC
ACCTCCTTGAGCATGGCCACATTTAGCGGATTTATCTTCGTGGCTCTAAA
GATCTACCCCACAATGATCTACGATCAGGGCCTGGCTGCCACCATGTTCA
TGTCGGCGGGCATGTGCCTATTCGGATTCATTGTCTTGGGACTGTTTCTG
CCAGAGACCAAAGGAAAGCTGATGACGCACGCAAGCTTTCTAGACCAT

BO17569.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14606-RB 1317 CG14606-PB 1..1314 17..1330 6570 100 Plus
CG14606-RA 1317 CG14606-PA 1..1314 17..1330 6570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14606-RB 1863 CG14606-RB 150..1463 17..1330 6570 100 Plus
CG14606-RA 1925 CG14606-RA 212..1525 17..1330 6570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7215029..7215441 1135..723 2065 100 Minus
3R 32079331 3R 7215505..7215859 722..368 1775 100 Minus
3R 32079331 3R 7214739..7214935 1330..1134 985 100 Minus
3R 32079331 3R 7216383..7216514 369..238 660 100 Minus
3R 32079331 3R 7216592..7216704 238..126 565 100 Minus
3R 32079331 3R 7216762..7216872 127..17 555 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:11:10 has no hits.

BO17569.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:06 Download gff for BO17569.complete
Subject Subject Range Query Range Percent Splice Strand
CG14606-RA 1..1317 17..1333 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:52 Download gff for BO17569.complete
Subject Subject Range Query Range Percent Splice Strand
CG14606-RA 1..1317 17..1333 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:06 Download gff for BO17569.complete
Subject Subject Range Query Range Percent Splice Strand
CG14606-RA 212..1525 17..1332 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:06 Download gff for BO17569.complete
Subject Subject Range Query Range Percent Splice Strand
CG14606-RA 1..1317 17..1333 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:57 Download gff for BO17569.complete
Subject Subject Range Query Range Percent Splice Strand
CG14606-RA 212..1525 17..1332 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:57 Download gff for BO17569.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7214736..7214933 1136..1332 98 <- Minus
3R 7215029..7215441 723..1135 100 <- Minus
3R 7215505..7215857 370..722 100 <- Minus
3R 7216383..7216513 239..369 100 <- Minus
3R 7216592..7216703 127..238 100 <- Minus
3R 7216763..7216872 17..126 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:06 Download gff for BO17569.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3040458..3040655 1136..1332 98 <- Minus
arm_3R 3040751..3041163 723..1135 100 <- Minus
arm_3R 3041227..3041579 370..722 100 <- Minus
arm_3R 3042105..3042235 239..369 100 <- Minus
arm_3R 3042314..3042425 127..238 100 <- Minus
arm_3R 3042485..3042594 17..126 100   Minus

BO17569.pep Sequence

Translation from 16 to 1348

> BO17569.pep
MTLTHGIAVGWLSPSLRLLASDESPLGDPLTITQASWVGSLIGLGSLTGN
IIFGLLLDRLGRKVCMYFLAIPNMIYWILIYSAQDVTYLYAGRFLAGMSG
GGCYVVLPIFIAEIADNSVRGALSSMAMMYVSIGMMVGFTLASYLPYYLM
PCIIVALPVVFMLSVIGLSETPQYLLRRGRDDQAEKSFYFYKNLTPPTSS
DKEASQHDAAKIEFDTFRLQVLSGGVTESISWRDFINVPTLKIFGLIFVL
IICNQLSGSFAIFNYTSHIFAELGNNLDPNTSTIVVGAAQLVGIFSAVVL
VDRLGRRVLLLTSMGGMGLGELAIALLKCFASDEFLNQNGWLPLVIMCLV
ACIASLGVIALIFIIIIELLPAKIRSIGTSLSMATFSGFIFVALKIYPTM
IYDQGLAATMFMSAGMCLFGFIVLGLFLPETKGKLMTHASFLDH

BO17569.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14606-PB 438 CG14606-PB 1..438 1..438 2220 100 Plus
CG14606-PA 438 CG14606-PA 1..438 1..438 2220 100 Plus
CG14605-PD 432 CG14605-PD 1..431 1..437 1139 49.7 Plus
CG14605-PB 432 CG14605-PB 1..431 1..437 1139 49.7 Plus
CG33282-PB 460 CG33282-PB 27..457 1..436 932 41.8 Plus