Clone Sequence Records
BO17569.3prime Sequence
897 bp (758 high quality bases) assembled on 2006-10-13
> BO17569.3prime
ATGGTCTAGAAAGCTTGCGTGCGTCATCAGCTTTCCTTTGGTCTCTGGCA
GAAACAGTCCCAAGACAATGAATCCGAATAGGCACATGCCCGCCGACATG
AACATGGTGGCAGCCAGGCCCTGATCGTAGATCATTGTGGGGTAGATCTT
TAGAGCCACGAAGATAAATCCGCTAAATGTGGCCATGCTCAAGGAGGTGC
CAATGGAGCGGATCTTAGCTGGGAGCAGCTCAATAATGATGATGAAGATC
AGGGCTATAACTCCTAGTGAAGCAATGCAGGCCACAAGGCACATGATCAC
CAAAGGAAGCCATCCATTCTGGTTCAGAAACTCATCCGATGCGAAGCACT
TGAGCAGAGCAATTGCCAGCTCACCCAAACCCATTCCACCCATTGAGGTG
AGGAGCAGAACACGACGACCCAGTCTGTCCACTAGGACGACAGCACTGAA
GATTCCCACCAGCTGTGCAGCTCCGACCACAATGGTGCTGGTGTTTGGAT
CCAGATTGTTGCCTAGCTCAGCAAAAATGTGCGATGTGTAGTTGAAGATG
GCGAAGCTCCCTGACAGCTGATTGCAGATGATCAGTACAAAGATGAGGCC
GAATATCTTTAGTGTAGGCACGTTAATGAAATCCCGCCAAGAAATGCTCT
CGGTGACGCCGCCACTGAGCACCTGAAGCCGAAATGTGTCAAACTCAATT
TTAGCTGCGTCATGCTGAGAAGCTTCCTTGTCGGAGGAAGTGGGTGGTGT
CAGGTTCTTGTAGAAGTAGAAAGACTTCTCGGCCTGGTCATCGCGCCCTC
GTCTCAACAAATATTGCGGTGTCTCCGATAAGCCAATAACTGACAACATA
AACACACCGGCAGAGCAACGATAATGCACGGCATCAGATAGTACGGG
BO17569.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14606-PA | 1317 | CG14606-RA | 478..1314 | 855..19 | 4185 | 100 | Minus |
CG14606-PA | 1317 | CG14606-RA | 435..477 | 897..855 | 215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14606-RB | 1863 | CG14606-RB | 584..1463 | 897..19 | 4375 | 99.9 | Minus |
CG14606-RA | 1925 | CG14606-RA | 646..1525 | 897..19 | 4375 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:55:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7215029..7215441 | 214..626 | 2065 | 100 | Plus |
3R | 32079331 | 3R | 7215505..7215776 | 627..897 | 1310 | 99.6 | Plus |
3R | 32079331 | 3R | 7214739..7214935 | 19..215 | 985 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:55:18 has no hits.
BO17569.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:06 Download gff for
BO17569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-PA | 435..1317 | 16..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:21 Download gff for
BO17569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-RA | 646..1525 | 19..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:37 Download gff for
BO17569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-RA | 646..1525 | 19..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:37 Download gff for
BO17569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7215505..7215776 | 627..897 | 99 | | Plus |
3R | 7214739..7214933 | 19..213 | 100 | <- | Plus |
3R | 7215029..7215441 | 214..626 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:21 Download gff for
BO17569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3040461..3040655 | 19..213 | 100 | <- | Plus |
arm_3R | 3040751..3041163 | 214..626 | 100 | <- | Plus |
arm_3R | 3041227..3041498 | 627..897 | 99 | | Plus |
BO17569.5prime Sequence
862 bp (837 high quality bases) assembled on 2006-10-13
> BO17569.5prime
GAAGTTATCAGTCGACATGACACTGACCCATGGAATTGCCGTGGGATGGC
TGTCTCCCTCTCTTCGACTGCTCGCATCCGACGAAAGCCCTTTGGGGGAT
CCCCTGACCATTACCCAGGCATCCTGGGTTGGATCACTTATCGGCCTAGG
CTCGCTGACCGGCAATATAATCTTTGGACTGCTACTCGATCGATTGGGCC
GTAAAGTGTGCATGTATTTCCTGGCCATACCCAATATGATCTACTGGATC
CTTATCTACTCCGCCCAAGACGTTACGTATCTGTATGCTGGTCGATTCCT
GGCGGGAATGTCCGGAGGTGGCTGTTACGTCGTCTTGCCCATATTCATAG
CTGAAATAGCCGACAATAGCGTTCGGGGAGCGTTATCGTCCATGGCCATG
ATGTACGTTAGCATCGGCATGATGGTTGGCTTTACATTAGCCTCGTATCT
CCCGTACTATCTGATGCCGTGCATTATCGTTGCTCTGCCGGTGGTGTTTA
TGTTGTCAGTTATTGGCTTATCGGAGACACCGCAATATTTGTTGAGACGA
GGGCGCGATGACCAGGCCGAGAAGTCTTTCTACTTCTACAAGAACCTGAC
ACCACCCACTTCCTCCGACAAGGAAGCTTCTCAGCATGACGCAGCTAANA
TTGAGTTTGACACATTTCGGCTTCAGGTGCTCAGTGGCGGCGTCACCGAG
AGCATTTCTTGGCGGGATTTCATTAACGTGCCTACACTAAAGATATTCGG
CCTCATCTTTGTACTGATCATCTGCAATCAGCTGTCAGGGAGCTTCGCCA
TCTTCAACTACACATCGCACATTTTTGCTGAGCTAGGCAACAATCTGGAT
CCAAACACCAGC
BO17569.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14606-PA | 1317 | CG14606-RA | 1..846 | 17..862 | 4211 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:56:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14606-RB | 1863 | CG14606-RB | 150..995 | 17..862 | 4219 | 99.9 | Plus |
CG14606-RA | 1925 | CG14606-RA | 212..1057 | 17..862 | 4219 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:56:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7215505..7215859 | 722..368 | 1764 | 99.7 | Minus |
3R | 32079331 | 3R | 7215302..7215441 | 862..723 | 700 | 100 | Minus |
3R | 32079331 | 3R | 7216383..7216514 | 369..238 | 660 | 100 | Minus |
3R | 32079331 | 3R | 7216592..7216704 | 238..126 | 565 | 100 | Minus |
3R | 32079331 | 3R | 7216762..7216872 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:56:37 has no hits.
BO17569.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:07 Download gff for
BO17569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:53 Download gff for
BO17569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-RA | 212..1057 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:52 Download gff for
BO17569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-RA | 212..1057 | 17..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:52 Download gff for
BO17569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7215302..7215441 | 723..862 | 100 | <- | Minus |
3R | 7215505..7215857 | 370..722 | 99 | <- | Minus |
3R | 7216383..7216513 | 239..369 | 100 | <- | Minus |
3R | 7216592..7216703 | 127..238 | 100 | <- | Minus |
3R | 7216763..7216872 | 17..126 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:53 Download gff for
BO17569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3041024..3041163 | 723..862 | 100 | <- | Minus |
arm_3R | 3041227..3041579 | 370..722 | 99 | <- | Minus |
arm_3R | 3042105..3042235 | 239..369 | 100 | <- | Minus |
arm_3R | 3042314..3042425 | 127..238 | 100 | <- | Minus |
arm_3R | 3042485..3042594 | 17..126 | 100 | | Minus |
BO17569.complete Sequence
1348 bp assembled on 2006-10-11
GenBank Submission: FJ634174
> BO17569.complete
GAAGTTATCAGTCGACATGACACTGACCCATGGAATTGCCGTGGGATGGC
TGTCTCCCTCTCTTCGACTGCTCGCATCCGACGAAAGCCCTTTGGGGGAT
CCCCTGACCATTACCCAGGCATCCTGGGTTGGATCACTTATCGGCCTAGG
CTCGCTGACCGGCAATATAATCTTTGGACTGCTACTCGATCGATTGGGCC
GTAAAGTGTGCATGTATTTCCTGGCCATACCCAATATGATCTACTGGATC
CTTATCTACTCCGCCCAAGACGTTACGTATCTGTATGCTGGTCGATTCCT
GGCGGGAATGTCCGGAGGTGGCTGTTACGTCGTCTTGCCCATATTCATAG
CTGAAATAGCCGACAATAGCGTTCGGGGAGCGTTATCGTCCATGGCCATG
ATGTACGTTAGCATCGGCATGATGGTTGGCTTTACATTAGCCTCGTATCT
CCCGTACTATCTGATGCCGTGCATTATCGTTGCTCTGCCGGTGGTGTTTA
TGTTGTCAGTTATTGGCTTATCGGAGACACCGCAATATTTGTTGAGACGA
GGGCGCGATGACCAGGCCGAGAAGTCTTTCTACTTCTACAAGAACCTGAC
ACCACCCACTTCCTCCGACAAGGAAGCTTCTCAGCATGACGCAGCTAAAA
TTGAGTTTGACACATTTCGGCTTCAGGTGCTCAGTGGCGGCGTCACCGAG
AGCATTTCTTGGCGGGATTTCATTAACGTGCCTACACTAAAGATATTCGG
CCTCATCTTTGTACTGATCATCTGCAATCAGCTGTCAGGGAGCTTCGCCA
TCTTCAACTACACATCGCACATTTTTGCTGAGCTAGGCAACAATCTGGAT
CCAAACACCAGCACCATTGTGGTCGGAGCTGCACAGCTGGTGGGAATCTT
CAGTGCTGTCGTCCTAGTGGACAGACTGGGTCGTCGTGTTCTGCTCCTCA
CCTCAATGGGTGGAATGGGTTTGGGTGAGCTGGCAATTGCTCTGCTCAAG
TGCTTCGCATCGGATGAGTTTCTGAACCAGAATGGATGGCTTCCTTTGGT
GATCATGTGCCTTGTGGCCTGCATTGCTTCACTAGGAGTTATAGCCCTGA
TCTTCATCATCATTATTGAGCTGCTCCCAGCTAAGATCCGCTCCATTGGC
ACCTCCTTGAGCATGGCCACATTTAGCGGATTTATCTTCGTGGCTCTAAA
GATCTACCCCACAATGATCTACGATCAGGGCCTGGCTGCCACCATGTTCA
TGTCGGCGGGCATGTGCCTATTCGGATTCATTGTCTTGGGACTGTTTCTG
CCAGAGACCAAAGGAAAGCTGATGACGCACGCAAGCTTTCTAGACCAT
BO17569.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14606-RB | 1317 | CG14606-PB | 1..1314 | 17..1330 | 6570 | 100 | Plus |
CG14606-RA | 1317 | CG14606-PA | 1..1314 | 17..1330 | 6570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14606-RB | 1863 | CG14606-RB | 150..1463 | 17..1330 | 6570 | 100 | Plus |
CG14606-RA | 1925 | CG14606-RA | 212..1525 | 17..1330 | 6570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7215029..7215441 | 1135..723 | 2065 | 100 | Minus |
3R | 32079331 | 3R | 7215505..7215859 | 722..368 | 1775 | 100 | Minus |
3R | 32079331 | 3R | 7214739..7214935 | 1330..1134 | 985 | 100 | Minus |
3R | 32079331 | 3R | 7216383..7216514 | 369..238 | 660 | 100 | Minus |
3R | 32079331 | 3R | 7216592..7216704 | 238..126 | 565 | 100 | Minus |
3R | 32079331 | 3R | 7216762..7216872 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:11:10 has no hits.
BO17569.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:06 Download gff for
BO17569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-RA | 1..1317 | 17..1333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:52 Download gff for
BO17569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-RA | 1..1317 | 17..1333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:06 Download gff for
BO17569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-RA | 212..1525 | 17..1332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:06 Download gff for
BO17569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-RA | 1..1317 | 17..1333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:57 Download gff for
BO17569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-RA | 212..1525 | 17..1332 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:57 Download gff for
BO17569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7214736..7214933 | 1136..1332 | 98 | <- | Minus |
3R | 7215029..7215441 | 723..1135 | 100 | <- | Minus |
3R | 7215505..7215857 | 370..722 | 100 | <- | Minus |
3R | 7216383..7216513 | 239..369 | 100 | <- | Minus |
3R | 7216592..7216703 | 127..238 | 100 | <- | Minus |
3R | 7216763..7216872 | 17..126 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:06 Download gff for
BO17569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3040458..3040655 | 1136..1332 | 98 | <- | Minus |
arm_3R | 3040751..3041163 | 723..1135 | 100 | <- | Minus |
arm_3R | 3041227..3041579 | 370..722 | 100 | <- | Minus |
arm_3R | 3042105..3042235 | 239..369 | 100 | <- | Minus |
arm_3R | 3042314..3042425 | 127..238 | 100 | <- | Minus |
arm_3R | 3042485..3042594 | 17..126 | 100 | | Minus |
BO17569.pep Sequence
Translation from 16 to 1348
> BO17569.pep
MTLTHGIAVGWLSPSLRLLASDESPLGDPLTITQASWVGSLIGLGSLTGN
IIFGLLLDRLGRKVCMYFLAIPNMIYWILIYSAQDVTYLYAGRFLAGMSG
GGCYVVLPIFIAEIADNSVRGALSSMAMMYVSIGMMVGFTLASYLPYYLM
PCIIVALPVVFMLSVIGLSETPQYLLRRGRDDQAEKSFYFYKNLTPPTSS
DKEASQHDAAKIEFDTFRLQVLSGGVTESISWRDFINVPTLKIFGLIFVL
IICNQLSGSFAIFNYTSHIFAELGNNLDPNTSTIVVGAAQLVGIFSAVVL
VDRLGRRVLLLTSMGGMGLGELAIALLKCFASDEFLNQNGWLPLVIMCLV
ACIASLGVIALIFIIIIELLPAKIRSIGTSLSMATFSGFIFVALKIYPTM
IYDQGLAATMFMSAGMCLFGFIVLGLFLPETKGKLMTHASFLDH
BO17569.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14606-PB | 438 | CG14606-PB | 1..438 | 1..438 | 2220 | 100 | Plus |
CG14606-PA | 438 | CG14606-PA | 1..438 | 1..438 | 2220 | 100 | Plus |
CG14605-PD | 432 | CG14605-PD | 1..431 | 1..437 | 1139 | 49.7 | Plus |
CG14605-PB | 432 | CG14605-PB | 1..431 | 1..437 | 1139 | 49.7 | Plus |
CG33282-PB | 460 | CG33282-PB | 27..457 | 1..436 | 932 | 41.8 | Plus |