Clone Sequence Records
BO17570.3prime Sequence
808 bp (690 high quality bases) assembled on 2006-10-13
> BO17570.3prime
ATGGTCTAGAAAGCTTGCCATGTCATCCAGCAATCCAAACTGATCCAGAA
AAGGCAGTGTGACACTTAATTTCTTTTTTATATTTTCCGATTCATAAACT
GAGTTCTTGAATCGCATTCCACTCTCGGAACTGGATAGGACCTGCTCAAT
AGAAGCATCCTCTTTGCCCTCGTACTGCATGACAGGCTCAAAAATCAAGG
AACAGAATACGGCATAGAATCCTCTCGAGCGGAACTGCAGTTGGAAGTCG
AACAAGCTGGGTATCCGACCAGCATATTTTAACTTCCTTAGGGCCTCCGT
CAGCCTATAGTAATAAAACTGAACCAATTCTGTTTGATGTTCCAAGCGAA
GATTATCCTGCAACGAGGTGGAGAAGAAGTAGTGGAGATCGATGGCCGGC
GAGTTCCACACGCTGAACTGGAAGTCAATGAAGATGGCATTCGTGGGATG
CTCTTTTGCATCGTACTGGAACATAAAGTTGGTGGTCCAAAGATCTCCAT
GGGCCAGAGTTAAAAAGTCGCCAGGACTACTAGTCGTCGATCTTTCGCCA
TAGTCCATCAAACGTTCCACAAGCCTGTCGATCTTGGCCTTGTACCGCTG
TCCCAACTCCTCATCCGAAGCAAGGGAGCGGGACAGAGCCTCCAGAAGAT
TGGTCATGATCGGGGCGTATGCCCGGGTGTGTTTGTTGAAAAACCACGAT
CATAGTTCTTGTCGAAGATACCCGGCTGTCGCTCGGCGAGAACTGATGAA
GCTGCATGAAAGAGGGCCAGTTTCTCCAGTACCAGGTGGGTGTGTTCTAA
GTCCAGCT
BO17570.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11878-PA | 1263 | CG11878-RA | 586..1260 | 693..19 | 3375 | 100 | Minus |
| CG11878-PA | 1263 | CG11878-RA | 470..584 | 808..694 | 550 | 99.1 | Minus |
| CG11889-PA | 1254 | CG11889-RA | 829..906 | 441..364 | 190 | 89.7 | Minus |
| CG13656-PA | 1101 | CG13656-RA | 697..749 | 420..368 | 165 | 92.4 | Minus |
| CG11891-PA | 1080 | CG11891-RA | 688..722 | 408..374 | 150 | 97.1 | Minus |
| CG11891-PB | 1080 | CG11891-RB | 688..722 | 408..374 | 150 | 97.1 | Minus |
| CG11891-PC | 1224 | CG11891-RC | 832..866 | 408..374 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:47:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11878-RA | 1345 | CG11878-RA | 481..1271 | 808..19 | 3915 | 99.7 | Minus |
| CG11891-RE | 1337 | CG11891-RE | 476..924 | 794..347 | 560 | 75.9 | Minus |
| CG11891-RD | 2922 | CG11891-RD | 2061..2509 | 794..347 | 560 | 75.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:47:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25274317..25274913 | 808..213 | 2920 | 99.7 | Minus |
| 3R | 32079331 | 3R | 25274969..25275163 | 213..19 | 975 | 100 | Minus |
| 3R | 32079331 | 3R | 25269119..25269693 | 806..233 | 530 | 73.2 | Minus |
| 3R | 32079331 | 3R | 25272349..25272797 | 794..347 | 530 | 75.1 | Minus |
| 3R | 32079331 | 3R | 25270901..25271194 | 599..306 | 510 | 78.2 | Minus |
| 3R | 32079331 | 3R | 25268042..25268216 | 460..288 | 195 | 75.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:47:09 has no hits.
BO17570.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:08 Download gff for
BO17570.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11878-PA | 470..1263 | 15..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:45:58 Download gff for
BO17570.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11878-RA | 481..1274 | 15..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:05:13 Download gff for
BO17570.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11878-RA | 481..1274 | 15..808 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:05:13 Download gff for
BO17570.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25274317..25274913 | 213..808 | 99 | -> | Minus |
| 3R | 25274970..25275166 | 15..212 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:45:58 Download gff for
BO17570.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21100039..21100635 | 213..808 | 99 | -> | Minus |
| arm_3R | 21100692..21100888 | 15..212 | 98 | | Minus |
BO17570.5prime Sequence
882 bp (765 high quality bases) assembled on 2006-10-13
> BO17570.5prime
GAAGTTATCAGTCGACATGACTGAGAAATCTACCCACAAAGTTCACCCAG
CGCCAGTTTGGCTCACCTCGGAATATGTGCAGGATAAGTTGCGCACCTAC
TTCAAGGATAGCTCACTGAAGCTGGCGACGTTGGATACAAAGCCAGCCGT
GGCCAATGGAGGAAACTACGGCAGCGTGATGACCCGCATCAATGTGGAGT
ACACGACCAAGGTATCGAAAGGGAAACAGTCCACCACATTTCTGGTTAAG
ACCACATTCGCTGACCGGGATCCAGCCGGCGATGTGCTCATCCACTATGG
TGTCTACACCCGTGAAATGGATATATACGAGCACATCCTTCCCCAGCTGG
CGGATATGGTGAGGAAGGAGCTTAAAGACTCCAGGAAGCTCTTTGCGGCC
ACCATGAATGTGGACCGCGAAAGGGACTCGATCATCTTCGAGGACATGTC
ACTGGATCATTACAAGGTTGCATGCCGTCGAAAGAAGCTGGACCTAGAAC
ACACCCACCTGGTACTGGAGAAACTGGCCCTCTTTCATGCAGCTTCATCA
GTTCTCGCCGAGCGACAGCCGGGTATCTTCGACAAGAACTATGATCGTGG
CTTTTTCAACAAACACACCCGGGCATACGCCCCGATCATGACCAATCTTC
TGGAGGCTCTGTCCCGCTCCCTTGCTTCGGATGAGGAGTTGGGACAGCGG
TACAAGGCCAAGATCGACAGGCTTGTGGAACGTTTGATGGACTATGGCGA
AAGATCGACGACTAGTAGTCCTGGCGACTTTTTAACTCTGGGCCATGGAG
ATCTTTGGACCACCAACTTTATGTTTCAGTACGATGCAAAAGAGCATCCC
ACGAATGGCATCTTCATTGACTTTCAGTTCAG
BO17570.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11878-PA | 1263 | CG11878-RA | 1..866 | 17..882 | 4230 | 99.5 | Plus |
| CG11889-PA | 1254 | CG11889-RA | 139..178 | 164..203 | 150 | 95 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:41:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11878-RA | 1345 | CG11878-RA | 11..877 | 16..882 | 4275 | 99.5 | Plus |
| CG11891-RD | 2922 | CG11891-RD | 130..857 | 155..882 | 700 | 73.6 | Plus |
| CG11889-RB | 1317 | CG11889-RB | 152..879 | 155..882 | 700 | 73.6 | Plus |
| CG11891-RD | 2922 | CG11891-RD | 1856..2443 | 295..882 | 605 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25273847..25274713 | 16..882 | 4275 | 99.5 | Plus |
| 3R | 32079331 | 3R | 25270360..25271087 | 155..882 | 685 | 72.9 | Plus |
| 3R | 32079331 | 3R | 25272144..25272731 | 295..882 | 600 | 73.5 | Plus |
| 3R | 32079331 | 3R | 25268987..25269246 | 356..615 | 370 | 76.2 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:41:14 has no hits.
BO17570.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:08 Download gff for
BO17570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11878-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:44:13 Download gff for
BO17570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11878-RA | 4..877 | 7..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:21 Download gff for
BO17570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11878-RA | 4..877 | 7..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:21 Download gff for
BO17570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25273840..25274713 | 7..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:44:13 Download gff for
BO17570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21099562..21100435 | 7..882 | 99 | | Plus |
BO17570.complete Sequence
1294 bp assembled on 2006-10-11
GenBank Submission: FJ638755
> BO17570.complete
GAAGTTATCAGTCGACATGACTGAGAAATCTACCCACAAAGTTCACCCAG
CGCCAGTTTGGCTCACCTCGGAATATGTGCAGGATAAGTTGCGCACCTAC
TTCAAGGATAGCTCACTGAAGCTGGCGACGTTGGATACAAAGCCAGCCGT
GGCCAATGGAGGAAACTACGGCAGCGTGATGACCCGCATCAATGTGGAGT
ACACGACCAAGGTATCGAAAGGGAAACAGTCCACCACATTTCTGGTTAAG
ACCACATTCGCTGACCGGGATCCAGCCGGCGATGTGCTCATCCACTATGG
TGTCTACACCCGTGAAATGGATATATACGAGCACATCCTTCCCCAGCTGG
CGGATATGGTGAGGAAGGAGCTTAAAGACTCCAGGAAGCTCTTTGCGGCC
ACCATGAATGTGGACCGCGAAAGGGACTCGATCATCTTCGAGGACATGTC
ACTGGATCATTACAAGGTTGCATGCCGTCGAAAGAAGCTGGACCTAGAAC
ACACCCACCTGGTACTGGAGAAACTGGCCCTCTTTCATGCAGCTTCATCA
GTTCTCGCCGAGCGACAGCCGGGTATCTTCGACAAGAACTATGATCGTGG
CTTTTTCAACAAACACACCCGGGCATACGCCCCGATCATGACCAATCTTC
TGGAGGCTCTGTCCCGCTCCCTTGCTTCGGATGAGGAGTTGGGACAGCGG
TACAAGGCCAAGATCGACAGGCTTGTGGAACGTTTGATGGACTATGGCGA
AAGATCGACGACTAGTAGTCCTGGCGACTTTTTAACTCTGGCCCATGGAG
ATCTTTGGACCACCAACTTTATGTTCCAGTACGATGCAAAAGAGCATCCC
ACGAATGCCATCTTCATTGACTTCCAGTTCAGCGTGTGGAACTCGCCGGC
CATCGATCTCCACTACTTCTTCTCCACCTCGTTGCAGGATAATCTTCGCT
TGGAACATCAAACAGAATTGGTTCAGTTTTATTACTATAGGCTGACGGAG
GCCCTAAGGAAGTTAAAATATGCTGGTCGGATACCCAGCTTGTTCGACTT
CCAACTGCAGTTCCGCTCGAGAGGATTCTATGCCGTATTCTGTTCCTTGA
TTTTTGAGCCTGTCATGCAGTACGAGGGCAAAGAGGATGCTTCTATTGAG
CAGGTCCTATCCAGTTCCGAGAGTGGAATGCGATTCAAGAACTCAGTTTA
TGAATCGGAAAATATAAAAAAGAAATTAAGTGTCACACTGCCTTTTCTGG
ATCAGTTTGGATTGCTGGATGACATGGCAAGCTTTCTAGACCAT
BO17570.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:57:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11878-RA | 1263 | CG11878-PA | 1..1260 | 17..1276 | 6300 | 100 | Plus |
| CG11889-RB | 1254 | CG11889-PB | 130..1085 | 155..1110 | 940 | 73.2 | Plus |
| CG11889-RA | 1254 | CG11889-PA | 130..1085 | 155..1110 | 940 | 73.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:58:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11878-RA | 1345 | CG11878-RA | 11..1271 | 16..1276 | 6305 | 100 | Plus |
| CG11891-RD | 2922 | CG11891-RD | 130..1085 | 155..1110 | 940 | 73.2 | Plus |
| CG11889-RB | 1317 | CG11889-RB | 152..1107 | 155..1110 | 940 | 73.2 | Plus |
| CG11891-RD | 2922 | CG11891-RD | 1856..2509 | 295..948 | 780 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:57:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25273847..25274913 | 16..1082 | 5335 | 100 | Plus |
| 3R | 32079331 | 3R | 25274969..25275163 | 1082..1276 | 975 | 100 | Plus |
| 3R | 32079331 | 3R | 25270360..25271194 | 155..989 | 920 | 74 | Plus |
| 3R | 32079331 | 3R | 25272144..25272797 | 295..948 | 780 | 74.6 | Plus |
| 3R | 32079331 | 3R | 25268987..25269693 | 356..1062 | 655 | 72.8 | Plus |
| 3R | 32079331 | 3R | 25268042..25268216 | 835..1007 | 195 | 75.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:57:57 has no hits.
BO17570.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:08 Download gff for
BO17570.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11878-RA | 1..1263 | 17..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:55 Download gff for
BO17570.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11878-RA | 4..1274 | 7..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:59 Download gff for
BO17570.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11878-RA | 12..1271 | 17..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:08 Download gff for
BO17570.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11878-RA | 4..1274 | 7..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:40 Download gff for
BO17570.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11878-RA | 12..1271 | 17..1278 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:40 Download gff for
BO17570.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25273848..25274913 | 17..1082 | 100 | -> | Plus |
| 3R | 25274970..25275163 | 1083..1278 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:59 Download gff for
BO17570.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21099570..21100635 | 17..1082 | 100 | -> | Plus |
| arm_3R | 21100692..21100885 | 1083..1278 | 98 | | Plus |
BO17570.pep Sequence
Translation from 16 to 1294
> BO17570.pep
MTEKSTHKVHPAPVWLTSEYVQDKLRTYFKDSSLKLATLDTKPAVANGGN
YGSVMTRINVEYTTKVSKGKQSTTFLVKTTFADRDPAGDVLIHYGVYTRE
MDIYEHILPQLADMVRKELKDSRKLFAATMNVDRERDSIIFEDMSLDHYK
VACRRKKLDLEHTHLVLEKLALFHAASSVLAERQPGIFDKNYDRGFFNKH
TRAYAPIMTNLLEALSRSLASDEELGQRYKAKIDRLVERLMDYGERSTTS
SPGDFLTLAHGDLWTTNFMFQYDAKEHPTNAIFIDFQFSVWNSPAIDLHY
FFSTSLQDNLRLEHQTELVQFYYYRLTEALRKLKYAGRIPSLFDFQLQFR
SRGFYAVFCSLIFEPVMQYEGKEDASIEQVLSSSESGMRFKNSVYESENI
KKKLSVTLPFLDQFGLLDDMASFLDH
BO17570.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11878-PA | 420 | CG11878-PA | 1..420 | 1..420 | 2175 | 100 | Plus |
| CG11889-PB | 417 | CG11889-PB | 1..417 | 1..420 | 1549 | 69 | Plus |
| CG11889-PA | 417 | CG11889-PA | 1..417 | 1..420 | 1549 | 69 | Plus |
| CG11891-PE | 420 | CG11891-PE | 1..420 | 1..420 | 1480 | 67.1 | Plus |
| CG11891-PD | 420 | CG11891-PD | 1..420 | 1..420 | 1480 | 67.1 | Plus |
