Clone BO17571 Report

Search the DGRC for BO17571

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:175
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG12943-RA
Protein status:BO17571.pep: validated full length
Sequenced Size:1414

Clone Sequence Records

BO17571.3prime Sequence

716 bp (714 high quality bases) assembled on 2006-10-13

> BO17571.3prime
ATGGTCTAGAAAGCTTGCCATACTGTTGAGCGTCAACTGAAAATCACGGA
TCAGTTGCATCAAGGCAACCGTGCAACCAACTATGCCGAAAATAAGACCA
ATCAGGATAAGTAAGATATCCCGGATCAGCTTCCACATCAGCCGGCCATA
GCCCACATTATAGTTTAGGAACACATCGATCAATGCCGGACATAGAAGAT
TCAAGTTACTCAACGAAAAAGCGCCTTCCAGTTCCGTGAGAGCCGCTAGA
TTGGGCACACCAATTGCCACGGCACCTGTGAGAAAAAGAAACAGCAATCG
AACTACGTACTCAATTAGCGTGCGATACCTGCCCCTCGGTTCAGAGTTTT
CATAGTCGCTAAACATCACTGTGATCACTACGAAACCATTCAGAGGATAA
CTCAGAAATATTCCAGAGGCAATAAATACCTTAATGAACTGGGAAAGGAT
TTCATCCTGTGGAATATTTAGGGTAATACTGGCATGGACATTGTCTCCGA
AACGCCAATAGCCGATGATTCCAAAAAACATGTTCGAGAGCAGGATGAAT
AAAACAGCAAGATTGAGGACTCCAAAGAGGCCCAGATAGCTCTGCGGATG
TGCCATATGGGCCTCGACGACGAGCATAGAACCCACGGCTGTGAGGGAAA
AGGCGGCGATGGCTATGAATTCAATCCATTCGACAGGAGGTGTGACCATC
TCACGATCATTAATAT

BO17571.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12943-PA 1383 CG12943-RA 683..1380 716..19 3490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
polyph-RA 1546 CG12943-RA 774..1471 716..19 3490 100 Minus
polyph-RC 1502 CG12943-RC 1046..1427 400..19 1910 100 Minus
polyph-RC 1502 CG12943-RC 778..1045 716..449 1340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10905230..10905488 277..19 1295 100 Minus
2R 25286936 2R 10904698..10904876 627..449 895 100 Minus
2R 25286936 2R 10904998..10905173 448..273 880 100 Minus
2R 25286936 2R 10904549..10904637 716..628 445 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:07:09 has no hits.

BO17571.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:10 Download gff for BO17571.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12943-PA 683..1383 15..716 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:35:05 Download gff for BO17571.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12943-RA 774..1475 14..716 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:26 Download gff for BO17571.3prime
Subject Subject Range Query Range Percent Splice Strand
polyph-RA 774..1475 14..716 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:26 Download gff for BO17571.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10905232..10905492 14..275 99   Minus
2R 10904549..10904637 628..716 100 -> Minus
2R 10904698..10904876 449..627 100 -> Minus
2R 10904998..10905170 276..448 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:35:05 Download gff for BO17571.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6792054..6792142 628..716 100 -> Minus
arm_2R 6792203..6792381 449..627 100 -> Minus
arm_2R 6792503..6792675 276..448 100 -> Minus
arm_2R 6792737..6792997 14..275 99   Minus

BO17571.5prime Sequence

865 bp (796 high quality bases) assembled on 2006-10-13

> BO17571.5prime
GAAGTTATCAGTCGACATGGAGCCAAAGTCGCAGGATCAGGCTCCAAATC
GGGACGATCCTGACCTGCAGACTGAGCCTCTGACCATAGCCCAGTCCATA
ACCTCTTTCTACATGTACAATCCCTACGAGAAGCGAAGTGTGGAGGTGCC
CCTAACTAACTGTGACGCCTTCATTTCCCTGTTAAAATGTGTGATTGGAA
CGGGCATTCTGGCAATGCCGCTGGCCTTTCGATGCTCGGGATTCGTGATG
GGCACCGTGATGTCCATTCTGCTGATGATACTCCTGACGTACTCCATCCA
CTTGCTGATAGCTGACATGACGGAGTGCTGTCGAAGGCGCCGAGTTCCTC
AAGTTTCCATGCCGGAGGCCGTGAGGATTGCCTACGAGGAGGGTCCCAAG
TGGATCAATTGCTTTGGTCGGGCCGCTGGTTTTATGACCACTTGCGTTTT
GGTCTTCGGTCAGTTTCTGCTGTGCACCGTTTATCTGGTTTTCGTGTCCA
AGAACTTCAAGGAAATCGGTGACCATTATATTGAGAGGTACAATGAAAGG
TATTATGTGCTGGTCGCCTGTTTGCTGCTCTTGCCGCTCTTCATGATCCG
CCGTCTAAAGTATTTGGTACCCTTGAATTTGATCTCCAACTTCTTGCTAT
ACGCGGGATTCGCCCTAATCATGTACTATCTGTTCAATGGTCTTCCCAAT
ATTAATGATCGTGAGATGGTCACACCTCCTGTCGAATGGATTGATTCATA
GCCATCGCCGCCTTTTCCCTCACAGCCGTGGGTTCTATGCTCGTCGTCGA
GGGCCATATGGCACATCCGCAGAGCTATCTGGGGCCTCTTGGGAGTCCTC
AATCTTGCTGGTTTA

BO17571.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12943-PA 1383 CG12943-RA 1..728 17..744 3640 100 Plus
CG12943-PA 1383 CG12943-RA 729..818 744..833 425 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
polyph-RA 1546 CG12943-RA 92..940 17..865 4155 99.4 Plus
polyph-RC 1502 CG12943-RC 92..944 17..865 4105 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10904157..10904637 307..786 2355 99.8 Plus
2R 25286936 2R 10903945..10904095 157..307 755 100 Plus
2R 25286936 2R 10903661..10903734 17..90 370 100 Plus
2R 25286936 2R 10903794..10903859 91..156 330 100 Plus
2R 25286936 2R 10904698..10904775 787..865 300 94.9 Plus
Blast to na_te.dros performed on 2015-02-11 17:47:59 has no hits.

BO17571.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:10 Download gff for BO17571.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12943-PA 1..847 17..864 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:41 Download gff for BO17571.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12943-RA 90..938 14..864 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:27 Download gff for BO17571.5prime
Subject Subject Range Query Range Percent Splice Strand
polyph-RA 90..938 14..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:27 Download gff for BO17571.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10903659..10903734 14..90 98 -> Plus
2R 10903794..10903859 91..156 100 -> Plus
2R 10903945..10904095 157..307 100 -> Plus
2R 10904158..10904637 308..786 99 -> Plus
2R 10904698..10904773 787..864 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:41 Download gff for BO17571.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6791164..6791239 14..90 98 -> Plus
arm_2R 6791299..6791364 91..156 100 -> Plus
arm_2R 6791450..6791600 157..307 100 -> Plus
arm_2R 6791663..6792142 308..786 99 -> Plus
arm_2R 6792203..6792278 787..864 94   Plus

BO17571.complete Sequence

1414 bp assembled on 2006-10-11

GenBank Submission: FJ634175

> BO17571.complete
GAAGTTATCAGTCGACATGGAGCCAAAGTCGCAGGATCAGGCTCCAAATC
GGGACGATCCTGACCTGCAGACTGAGCCTCTGACCATAGCCCAGTCCATA
ACCTCTTTCTACATGTACAATCCCTACGAGAAGCGAAGTGTGGAGGTGCC
CCTAACTAACTGTGACGCCTTCATTTCCCTGTTAAAATGTGTGATTGGAA
CGGGCATTCTGGCAATGCCGCTGGCCTTTCGATGCTCGGGATTCGTGATG
GGCACCGTGATGTCCATTCTGCTGATGATACTCCTGACGTACTCCATCCA
CTTGCTGATAGCTGACATGACGGAGTGCTGTCGAAGGCGCCGAGTTCCTC
AAGTTTCCATGCCGGAGGCCGTGAGGATTGCCTACGAGGAGGGTCCCAAG
TGGATCAATTGCTTTGGTCGGGCCGCTGGTTTTATGACCACTTGCGTTTT
GGTCTTCGGTCAGTTTCTGCTGTGCACCGTTTATCTGGTTTTCGTGTCCA
AGAACTTCAAGGAAATCGGTGACCATTATATTGAGAGGTACAATGAAAGG
TATTATGTGCTGGTCGCCTGTTTGCTGCTCTTGCCGCTCTTCATGATCCG
CCGTCTAAAGTATTTGGTACCCTTGAATTTGATCTCCAACTTCTTGCTAT
ACGCGGGATTCGCCCTAATCATGTACTATCTGTTCAATGGTCTTCCCAAT
ATTAATGATCGTGAGATGGTCACACCTCCTGTCGAATGGATTGAATTCAT
AGCCATCGCCGCCTTTTCCCTCACAGCCGTGGGTTCTATGCTCGTCGTCG
AGGCCCATATGGCACATCCGCAGAGCTATCTGGGCCTCTTTGGAGTCCTC
AATCTTGCTGTTTTATTCATCCTGCTCTCGAACATGTTTTTTGGAATCAT
CGGCTATTGGCGTTTCGGAGACAATGTCCATGCCAGTATTACCCTAAATA
TTCCACAGGATGAAATCCTTTCCCAGTTCATTAAGGTATTTATTGCCTCT
GGAATATTTCTGAGTTATCCTCTGAATGGTTTCGTAGTGATCACAGTGAT
GTTTAGCGACTATGAAAACTCTGAACCGAGGGGCAGGTATCGCACGCTAA
TTGAGTACGTAGTTCGATTGCTGTTTCTTTTTCTCACAGGTGCCGTGGCA
ATTGGTGTGCCCAATCTAGCGGCTCTCACGGAACTGGAAGGCGCTTTTTC
GTTGAGTAACTTGAATCTTCTATGTCCGGCATTGATCGATGTGTTCCTAA
ACTATAATGTGGGCTATGGCCGGCTGATGTGGAAGCTGATCCGGGATATC
TTACTTATCCTGATTGGTCTTATTTTCGGCATAGTTGGTTGCACGGTTGC
CTTGATGCAACTGATCCGTGATTTTCAGTTGACGCTCAACAGTATGGCAA
GCTTTCTAGACCAT

BO17571.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
polyph-RA 1383 CG12943-PA 1..1380 17..1396 6900 100 Plus
polyph-RC 303 CG12943-PC 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
polyph-RA 1546 CG12943-RA 92..1471 17..1396 6900 100 Plus
polyph-RC 1502 CG12943-RC 92..1045 17..966 4675 99.6 Plus
polyph-RC 1502 CG12943-RC 1046..1427 1015..1396 1910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10904157..10904637 307..787 2405 100 Plus
2R 25286936 2R 10905230..10905488 1138..1396 1295 100 Plus
2R 25286936 2R 10904698..10904876 788..966 895 100 Plus
2R 25286936 2R 10904998..10905173 967..1142 880 100 Plus
2R 25286936 2R 10903945..10904095 157..307 755 100 Plus
2R 25286936 2R 10903661..10903734 17..90 370 100 Plus
2R 25286936 2R 10903794..10903859 91..156 330 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:37:25 has no hits.

BO17571.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:09 Download gff for BO17571.complete
Subject Subject Range Query Range Percent Splice Strand
CG12943-RA 1..1383 17..1400 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:57 Download gff for BO17571.complete
Subject Subject Range Query Range Percent Splice Strand
CG12943-RA 90..1475 14..1401 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:49 Download gff for BO17571.complete
Subject Subject Range Query Range Percent Splice Strand
CG12943-RA 92..1471 17..1398 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:10 Download gff for BO17571.complete
Subject Subject Range Query Range Percent Splice Strand
CG12943-RA 90..1475 14..1401 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:26 Download gff for BO17571.complete
Subject Subject Range Query Range Percent Splice Strand
polyph-RA 92..1471 17..1398 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:26 Download gff for BO17571.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10903661..10903734 17..90 100 -> Plus
2R 10903794..10903859 91..156 100 -> Plus
2R 10903945..10904095 157..307 100 -> Plus
2R 10904158..10904637 308..787 100 -> Plus
2R 10904698..10904876 788..966 100 -> Plus
2R 10904998..10905170 967..1139 100 -> Plus
2R 10905232..10905488 1140..1398 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:49 Download gff for BO17571.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6792203..6792381 788..966 100 -> Plus
arm_2R 6792503..6792675 967..1139 100 -> Plus
arm_2R 6792737..6792993 1140..1398 99   Plus
arm_2R 6791166..6791239 17..90 100 -> Plus
arm_2R 6791299..6791364 91..156 100 -> Plus
arm_2R 6791450..6791600 157..307 100 -> Plus
arm_2R 6791663..6792142 308..787 100 -> Plus

BO17571.pep Sequence

Translation from 16 to 1414

> BO17571.pep
MEPKSQDQAPNRDDPDLQTEPLTIAQSITSFYMYNPYEKRSVEVPLTNCD
AFISLLKCVIGTGILAMPLAFRCSGFVMGTVMSILLMILLTYSIHLLIAD
MTECCRRRRVPQVSMPEAVRIAYEEGPKWINCFGRAAGFMTTCVLVFGQF
LLCTVYLVFVSKNFKEIGDHYIERYNERYYVLVACLLLLPLFMIRRLKYL
VPLNLISNFLLYAGFALIMYYLFNGLPNINDREMVTPPVEWIEFIAIAAF
SLTAVGSMLVVEAHMAHPQSYLGLFGVLNLAVLFILLSNMFFGIIGYWRF
GDNVHASITLNIPQDEILSQFIKVFIASGIFLSYPLNGFVVITVMFSDYE
NSEPRGRYRTLIEYVVRLLFLFLTGAVAIGVPNLAALTELEGAFSLSNLN
LLCPALIDVFLNYNVGYGRLMWKLIRDILLILIGLIFGIVGCTVALMQLI
RDFQLTLNSMASFLDH

BO17571.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
polyph-PA 460 CG12943-PA 1..460 1..460 2368 100 Plus
CG32081-PA 471 CG32081-PA 7..429 34..453 884 41.1 Plus
CG1139-PA 451 CG1139-PA 31..447 34..450 758 35.3 Plus
CG32079-PB 457 CG32079-PB 45..448 46..449 661 33.9 Plus
CG43693-PF 455 CG43693-PF 31..451 34..453 651 31.5 Plus