Clone Sequence Records
BO17571.3prime Sequence
716 bp (714 high quality bases) assembled on 2006-10-13
> BO17571.3prime
ATGGTCTAGAAAGCTTGCCATACTGTTGAGCGTCAACTGAAAATCACGGA
TCAGTTGCATCAAGGCAACCGTGCAACCAACTATGCCGAAAATAAGACCA
ATCAGGATAAGTAAGATATCCCGGATCAGCTTCCACATCAGCCGGCCATA
GCCCACATTATAGTTTAGGAACACATCGATCAATGCCGGACATAGAAGAT
TCAAGTTACTCAACGAAAAAGCGCCTTCCAGTTCCGTGAGAGCCGCTAGA
TTGGGCACACCAATTGCCACGGCACCTGTGAGAAAAAGAAACAGCAATCG
AACTACGTACTCAATTAGCGTGCGATACCTGCCCCTCGGTTCAGAGTTTT
CATAGTCGCTAAACATCACTGTGATCACTACGAAACCATTCAGAGGATAA
CTCAGAAATATTCCAGAGGCAATAAATACCTTAATGAACTGGGAAAGGAT
TTCATCCTGTGGAATATTTAGGGTAATACTGGCATGGACATTGTCTCCGA
AACGCCAATAGCCGATGATTCCAAAAAACATGTTCGAGAGCAGGATGAAT
AAAACAGCAAGATTGAGGACTCCAAAGAGGCCCAGATAGCTCTGCGGATG
TGCCATATGGGCCTCGACGACGAGCATAGAACCCACGGCTGTGAGGGAAA
AGGCGGCGATGGCTATGAATTCAATCCATTCGACAGGAGGTGTGACCATC
TCACGATCATTAATAT
BO17571.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12943-PA | 1383 | CG12943-RA | 683..1380 | 716..19 | 3490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
polyph-RA | 1546 | CG12943-RA | 774..1471 | 716..19 | 3490 | 100 | Minus |
polyph-RC | 1502 | CG12943-RC | 1046..1427 | 400..19 | 1910 | 100 | Minus |
polyph-RC | 1502 | CG12943-RC | 778..1045 | 716..449 | 1340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10905230..10905488 | 277..19 | 1295 | 100 | Minus |
2R | 25286936 | 2R | 10904698..10904876 | 627..449 | 895 | 100 | Minus |
2R | 25286936 | 2R | 10904998..10905173 | 448..273 | 880 | 100 | Minus |
2R | 25286936 | 2R | 10904549..10904637 | 716..628 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:07:09 has no hits.
BO17571.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:10 Download gff for
BO17571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12943-PA | 683..1383 | 15..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:35:05 Download gff for
BO17571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12943-RA | 774..1475 | 14..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:26 Download gff for
BO17571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
polyph-RA | 774..1475 | 14..716 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:26 Download gff for
BO17571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10905232..10905492 | 14..275 | 99 | | Minus |
2R | 10904549..10904637 | 628..716 | 100 | -> | Minus |
2R | 10904698..10904876 | 449..627 | 100 | -> | Minus |
2R | 10904998..10905170 | 276..448 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:35:05 Download gff for
BO17571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6792054..6792142 | 628..716 | 100 | -> | Minus |
arm_2R | 6792203..6792381 | 449..627 | 100 | -> | Minus |
arm_2R | 6792503..6792675 | 276..448 | 100 | -> | Minus |
arm_2R | 6792737..6792997 | 14..275 | 99 | | Minus |
BO17571.5prime Sequence
865 bp (796 high quality bases) assembled on 2006-10-13
> BO17571.5prime
GAAGTTATCAGTCGACATGGAGCCAAAGTCGCAGGATCAGGCTCCAAATC
GGGACGATCCTGACCTGCAGACTGAGCCTCTGACCATAGCCCAGTCCATA
ACCTCTTTCTACATGTACAATCCCTACGAGAAGCGAAGTGTGGAGGTGCC
CCTAACTAACTGTGACGCCTTCATTTCCCTGTTAAAATGTGTGATTGGAA
CGGGCATTCTGGCAATGCCGCTGGCCTTTCGATGCTCGGGATTCGTGATG
GGCACCGTGATGTCCATTCTGCTGATGATACTCCTGACGTACTCCATCCA
CTTGCTGATAGCTGACATGACGGAGTGCTGTCGAAGGCGCCGAGTTCCTC
AAGTTTCCATGCCGGAGGCCGTGAGGATTGCCTACGAGGAGGGTCCCAAG
TGGATCAATTGCTTTGGTCGGGCCGCTGGTTTTATGACCACTTGCGTTTT
GGTCTTCGGTCAGTTTCTGCTGTGCACCGTTTATCTGGTTTTCGTGTCCA
AGAACTTCAAGGAAATCGGTGACCATTATATTGAGAGGTACAATGAAAGG
TATTATGTGCTGGTCGCCTGTTTGCTGCTCTTGCCGCTCTTCATGATCCG
CCGTCTAAAGTATTTGGTACCCTTGAATTTGATCTCCAACTTCTTGCTAT
ACGCGGGATTCGCCCTAATCATGTACTATCTGTTCAATGGTCTTCCCAAT
ATTAATGATCGTGAGATGGTCACACCTCCTGTCGAATGGATTGATTCATA
GCCATCGCCGCCTTTTCCCTCACAGCCGTGGGTTCTATGCTCGTCGTCGA
GGGCCATATGGCACATCCGCAGAGCTATCTGGGGCCTCTTGGGAGTCCTC
AATCTTGCTGGTTTA
BO17571.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12943-PA | 1383 | CG12943-RA | 1..728 | 17..744 | 3640 | 100 | Plus |
CG12943-PA | 1383 | CG12943-RA | 729..818 | 744..833 | 425 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:48:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
polyph-RA | 1546 | CG12943-RA | 92..940 | 17..865 | 4155 | 99.4 | Plus |
polyph-RC | 1502 | CG12943-RC | 92..944 | 17..865 | 4105 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:47:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10904157..10904637 | 307..786 | 2355 | 99.8 | Plus |
2R | 25286936 | 2R | 10903945..10904095 | 157..307 | 755 | 100 | Plus |
2R | 25286936 | 2R | 10903661..10903734 | 17..90 | 370 | 100 | Plus |
2R | 25286936 | 2R | 10903794..10903859 | 91..156 | 330 | 100 | Plus |
2R | 25286936 | 2R | 10904698..10904775 | 787..865 | 300 | 94.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:47:59 has no hits.
BO17571.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:10 Download gff for
BO17571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12943-PA | 1..847 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:41 Download gff for
BO17571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12943-RA | 90..938 | 14..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:27 Download gff for
BO17571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
polyph-RA | 90..938 | 14..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:27 Download gff for
BO17571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10903659..10903734 | 14..90 | 98 | -> | Plus |
2R | 10903794..10903859 | 91..156 | 100 | -> | Plus |
2R | 10903945..10904095 | 157..307 | 100 | -> | Plus |
2R | 10904158..10904637 | 308..786 | 99 | -> | Plus |
2R | 10904698..10904773 | 787..864 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:41 Download gff for
BO17571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6791164..6791239 | 14..90 | 98 | -> | Plus |
arm_2R | 6791299..6791364 | 91..156 | 100 | -> | Plus |
arm_2R | 6791450..6791600 | 157..307 | 100 | -> | Plus |
arm_2R | 6791663..6792142 | 308..786 | 99 | -> | Plus |
arm_2R | 6792203..6792278 | 787..864 | 94 | | Plus |
BO17571.complete Sequence
1414 bp assembled on 2006-10-11
GenBank Submission: FJ634175
> BO17571.complete
GAAGTTATCAGTCGACATGGAGCCAAAGTCGCAGGATCAGGCTCCAAATC
GGGACGATCCTGACCTGCAGACTGAGCCTCTGACCATAGCCCAGTCCATA
ACCTCTTTCTACATGTACAATCCCTACGAGAAGCGAAGTGTGGAGGTGCC
CCTAACTAACTGTGACGCCTTCATTTCCCTGTTAAAATGTGTGATTGGAA
CGGGCATTCTGGCAATGCCGCTGGCCTTTCGATGCTCGGGATTCGTGATG
GGCACCGTGATGTCCATTCTGCTGATGATACTCCTGACGTACTCCATCCA
CTTGCTGATAGCTGACATGACGGAGTGCTGTCGAAGGCGCCGAGTTCCTC
AAGTTTCCATGCCGGAGGCCGTGAGGATTGCCTACGAGGAGGGTCCCAAG
TGGATCAATTGCTTTGGTCGGGCCGCTGGTTTTATGACCACTTGCGTTTT
GGTCTTCGGTCAGTTTCTGCTGTGCACCGTTTATCTGGTTTTCGTGTCCA
AGAACTTCAAGGAAATCGGTGACCATTATATTGAGAGGTACAATGAAAGG
TATTATGTGCTGGTCGCCTGTTTGCTGCTCTTGCCGCTCTTCATGATCCG
CCGTCTAAAGTATTTGGTACCCTTGAATTTGATCTCCAACTTCTTGCTAT
ACGCGGGATTCGCCCTAATCATGTACTATCTGTTCAATGGTCTTCCCAAT
ATTAATGATCGTGAGATGGTCACACCTCCTGTCGAATGGATTGAATTCAT
AGCCATCGCCGCCTTTTCCCTCACAGCCGTGGGTTCTATGCTCGTCGTCG
AGGCCCATATGGCACATCCGCAGAGCTATCTGGGCCTCTTTGGAGTCCTC
AATCTTGCTGTTTTATTCATCCTGCTCTCGAACATGTTTTTTGGAATCAT
CGGCTATTGGCGTTTCGGAGACAATGTCCATGCCAGTATTACCCTAAATA
TTCCACAGGATGAAATCCTTTCCCAGTTCATTAAGGTATTTATTGCCTCT
GGAATATTTCTGAGTTATCCTCTGAATGGTTTCGTAGTGATCACAGTGAT
GTTTAGCGACTATGAAAACTCTGAACCGAGGGGCAGGTATCGCACGCTAA
TTGAGTACGTAGTTCGATTGCTGTTTCTTTTTCTCACAGGTGCCGTGGCA
ATTGGTGTGCCCAATCTAGCGGCTCTCACGGAACTGGAAGGCGCTTTTTC
GTTGAGTAACTTGAATCTTCTATGTCCGGCATTGATCGATGTGTTCCTAA
ACTATAATGTGGGCTATGGCCGGCTGATGTGGAAGCTGATCCGGGATATC
TTACTTATCCTGATTGGTCTTATTTTCGGCATAGTTGGTTGCACGGTTGC
CTTGATGCAACTGATCCGTGATTTTCAGTTGACGCTCAACAGTATGGCAA
GCTTTCTAGACCAT
BO17571.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
polyph-RA | 1383 | CG12943-PA | 1..1380 | 17..1396 | 6900 | 100 | Plus |
polyph-RC | 303 | CG12943-PC | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:37:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
polyph-RA | 1546 | CG12943-RA | 92..1471 | 17..1396 | 6900 | 100 | Plus |
polyph-RC | 1502 | CG12943-RC | 92..1045 | 17..966 | 4675 | 99.6 | Plus |
polyph-RC | 1502 | CG12943-RC | 1046..1427 | 1015..1396 | 1910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10904157..10904637 | 307..787 | 2405 | 100 | Plus |
2R | 25286936 | 2R | 10905230..10905488 | 1138..1396 | 1295 | 100 | Plus |
2R | 25286936 | 2R | 10904698..10904876 | 788..966 | 895 | 100 | Plus |
2R | 25286936 | 2R | 10904998..10905173 | 967..1142 | 880 | 100 | Plus |
2R | 25286936 | 2R | 10903945..10904095 | 157..307 | 755 | 100 | Plus |
2R | 25286936 | 2R | 10903661..10903734 | 17..90 | 370 | 100 | Plus |
2R | 25286936 | 2R | 10903794..10903859 | 91..156 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:37:25 has no hits.
BO17571.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:09 Download gff for
BO17571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12943-RA | 1..1383 | 17..1400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:57 Download gff for
BO17571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12943-RA | 90..1475 | 14..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:49 Download gff for
BO17571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12943-RA | 92..1471 | 17..1398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:10 Download gff for
BO17571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12943-RA | 90..1475 | 14..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:26 Download gff for
BO17571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
polyph-RA | 92..1471 | 17..1398 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:26 Download gff for
BO17571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10903661..10903734 | 17..90 | 100 | -> | Plus |
2R | 10903794..10903859 | 91..156 | 100 | -> | Plus |
2R | 10903945..10904095 | 157..307 | 100 | -> | Plus |
2R | 10904158..10904637 | 308..787 | 100 | -> | Plus |
2R | 10904698..10904876 | 788..966 | 100 | -> | Plus |
2R | 10904998..10905170 | 967..1139 | 100 | -> | Plus |
2R | 10905232..10905488 | 1140..1398 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:49 Download gff for
BO17571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6792203..6792381 | 788..966 | 100 | -> | Plus |
arm_2R | 6792503..6792675 | 967..1139 | 100 | -> | Plus |
arm_2R | 6792737..6792993 | 1140..1398 | 99 | | Plus |
arm_2R | 6791166..6791239 | 17..90 | 100 | -> | Plus |
arm_2R | 6791299..6791364 | 91..156 | 100 | -> | Plus |
arm_2R | 6791450..6791600 | 157..307 | 100 | -> | Plus |
arm_2R | 6791663..6792142 | 308..787 | 100 | -> | Plus |
BO17571.pep Sequence
Translation from 16 to 1414
> BO17571.pep
MEPKSQDQAPNRDDPDLQTEPLTIAQSITSFYMYNPYEKRSVEVPLTNCD
AFISLLKCVIGTGILAMPLAFRCSGFVMGTVMSILLMILLTYSIHLLIAD
MTECCRRRRVPQVSMPEAVRIAYEEGPKWINCFGRAAGFMTTCVLVFGQF
LLCTVYLVFVSKNFKEIGDHYIERYNERYYVLVACLLLLPLFMIRRLKYL
VPLNLISNFLLYAGFALIMYYLFNGLPNINDREMVTPPVEWIEFIAIAAF
SLTAVGSMLVVEAHMAHPQSYLGLFGVLNLAVLFILLSNMFFGIIGYWRF
GDNVHASITLNIPQDEILSQFIKVFIASGIFLSYPLNGFVVITVMFSDYE
NSEPRGRYRTLIEYVVRLLFLFLTGAVAIGVPNLAALTELEGAFSLSNLN
LLCPALIDVFLNYNVGYGRLMWKLIRDILLILIGLIFGIVGCTVALMQLI
RDFQLTLNSMASFLDH
BO17571.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
polyph-PA | 460 | CG12943-PA | 1..460 | 1..460 | 2368 | 100 | Plus |
CG32081-PA | 471 | CG32081-PA | 7..429 | 34..453 | 884 | 41.1 | Plus |
CG1139-PA | 451 | CG1139-PA | 31..447 | 34..450 | 758 | 35.3 | Plus |
CG32079-PB | 457 | CG32079-PB | 45..448 | 46..449 | 661 | 33.9 | Plus |
CG43693-PF | 455 | CG43693-PF | 31..451 | 34..453 | 651 | 31.5 | Plus |