Clone Sequence Records
BO17572.3prime Sequence
815 bp (688 high quality bases) assembled on 2006-10-13
> BO17572.3prime
ATGGTCTAGAAAGCTTGCATTTTGCTTAGCTTTCCTGTGTTTCTTATTAC
TGCCCATCAGTAATCGAATGGCCAATGAGAGAGCCATGACGCCAGCTAAA
GCAATGATAGCCACAAATGCTATGACATCCAGCAAATAGAATTGGAACCA
GTTGAGATCCAGGCCTGCGGATCTCATATGTGAAGCACCTCGATGCCGGA
TGACATATTCGATCCAATAGACGGCACTTTTTCGCGGCTCCAGCGGACGA
TCGCGGAAAATATCCGATACCCTCTGAACGTTCTCTTTGTAGGTCACATT
ATGGATAAGTTGGTCCAAGGAGTGCCGCAGGATTTCCTCGGTAATCGATT
GGAAGTGCAGACTAATGGCATATCCGCCCAAAACCGCTTTGTTCATATTA
AGGTGCTGATCACAGTAGAAGGGTATACCCAGCATGGGCACAGCATAATG
CACTCCCTCCTGGGTGCCAAATAAGCCACCGTGGGTAATGAATACCTTCA
CATGACGATGGGCCAGAATGTCGGCCTGTGGCAGCCACTTCCTGACCATC
ACGTTATCTGGCAATTGGCTAATGCTCTCATCCTCGAATTTCCACAATAC
CCGCTGCTTGAGCGAACCGAATACCTGCAGGAACAATCGCAGCATTTCCA
CGGGCATGTCCTTGCTCTGGACATTGCTGCCCAGGCTGAAGAAGATGGCC
CCCTCGGTGGCGCCATCCAAGAGGGCTTGCATGTCAGCCGGCAGCGGTTT
GGGTGGATAGATGTGCATCCCGCCCACTGGCACCATGGCGTCCACTGTGG
GACGTGCCGTGGTCA
BO17572.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15661-PA | 1593 | CG15661-RA | 794..1590 | 815..19 | 3985 | 100 | Minus |
| CG15661-PB | 1593 | CG15661-RB | 794..1590 | 815..19 | 3985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15661-RB | 1899 | CG15661-RB | 1016..1812 | 815..19 | 3985 | 100 | Minus |
| CG15661-RA | 1824 | CG15661-RA | 941..1737 | 815..19 | 3985 | 100 | Minus |
| CG4302-RA | 1754 | CG4302-RA | 1082..1272 | 594..404 | 215 | 75.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21215971..21216380 | 406..815 | 2050 | 100 | Plus |
| 2R | 25286936 | 2R | 21215522..21215911 | 19..408 | 1950 | 100 | Plus |
| 2R | 25286936 | 2R | 21213362..21213486 | 404..528 | 205 | 77.6 | Plus |
| 2L | 23513712 | 2L | 18512780..18512930 | 552..402 | 185 | 74.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:04:22 has no hits.
BO17572.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:11 Download gff for
BO17572.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15661-PB | 795..1593 | 15..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:31:26 Download gff for
BO17572.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15661-RA | 942..1749 | 7..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:17:36 Download gff for
BO17572.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15661-RA | 942..1749 | 7..814 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:17:36 Download gff for
BO17572.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21215971..21216379 | 406..814 | 100 | | Plus |
| 2R | 21215510..21215908 | 7..405 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:31:26 Download gff for
BO17572.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17103015..17103413 | 7..405 | 98 | <- | Plus |
| arm_2R | 17103476..17103884 | 406..814 | 100 | | Plus |
BO17572.5prime Sequence
798 bp (729 high quality bases) assembled on 2006-10-13
> BO17572.5prime
GAAGTTATCAGTCGACATGCAGTTTCCATTATTATTTGGCCTCCTTCTGA
CTGGAACATTATATTCCCAGTTGGAATTGGCCGAAGGATCAAAAATCCTG
GCTGTGTATGCCTTTCCGGGAAAATCACATTTTATGATGCACACTGCTTT
GATAAGGGAACTTGTCGAAAGTGGTCATCAGGTGACCATGGTAACAGCTT
TTAGTCTGGAGAAAGAGCAACTTGGCAGCAACTACACGGAGATCTTGATA
GAACCGGTCTACGATTTCTGGCACGATGTTAAGCTGAACTTTGGAGCCCA
ACACCTATTCGAGCTGACCCGCATGACCAACTATGATTTCCTCAAAATGC
TGGAGATTATCGGCCTCAAGACCACCGAACATGCCCTGCGGCAGCCCAAG
GTTCGGTCTCTCATTCATGCCGAGCAAAAGGAAGGAGTCTTCGATCTTCT
CCTGGCCGAGCAGTTCTATCAGGAGGCCTTCTTGGCACTGGCTCATCTGT
ACAAAATACCCGTGGTGACCACGAGCACTTTGGGCTATGAGAATCACATG
AGTCAGATGATGGGTCTGATTACACCTTGGTCCTTTGTACCACACGGTTT
TATGCCCTTCACCGATCGCATGAGTTTCCTGGAGAGGGTGAAGAACTCCT
ATGCATCCTTCTACGAAGACATGGACAGGCTGCTAAACTATTTTCCGAAA
ATGGATGCGGTGGCCAGGGAGTTCTTTGGACCCGTACTGACCGAGGTGCC
CAAGGTCAAGCACATGGAGCGTCAAATCTCAGTGATGCTACTAAACAG
BO17572.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15661-PA | 1593 | CG15661-RA | 1..782 | 17..798 | 3910 | 100 | Plus |
| CG15661-PB | 1593 | CG15661-RB | 1..782 | 17..798 | 3910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15661-RB | 1899 | CG15661-RB | 223..1004 | 17..798 | 3910 | 100 | Plus |
| CG15661-RA | 1824 | CG15661-RA | 148..929 | 17..798 | 3910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21216506..21216968 | 740..278 | 2315 | 100 | Minus |
| 2R | 25286936 | 2R | 21217016..21217175 | 278..119 | 800 | 100 | Minus |
| 2R | 25286936 | 2R | 21217232..21217339 | 124..17 | 525 | 99.1 | Minus |
| 2R | 25286936 | 2R | 21216392..21216449 | 798..741 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:28:20 has no hits.
BO17572.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:11 Download gff for
BO17572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15661-PB | 1..782 | 17..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:13:35 Download gff for
BO17572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15661-RA | 143..929 | 8..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:06 Download gff for
BO17572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15661-RA | 143..929 | 8..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:06 Download gff for
BO17572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21216392..21216449 | 741..798 | 100 | <- | Minus |
| 2R | 21216506..21216967 | 279..740 | 100 | <- | Minus |
| 2R | 21217016..21217174 | 120..278 | 100 | <- | Minus |
| 2R | 21217237..21217344 | 8..119 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:13:35 Download gff for
BO17572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17103897..17103954 | 741..798 | 100 | <- | Minus |
| arm_2R | 17104011..17104472 | 279..740 | 100 | <- | Minus |
| arm_2R | 17104521..17104679 | 120..278 | 100 | <- | Minus |
| arm_2R | 17104742..17104849 | 8..119 | 96 | | Minus |
BO17572.complete Sequence
1624 bp assembled on 2007-03-23
GenBank Submission: FJ634176
> BO17572.complete
GAAGTTATCAGTCGACATGCAGTTTCCATTATTATTTGGCCTCCTTCTGA
CTGGAACATTATATTCCCAGTTGGAATTGGCCGAAGGATCAAAAATCCTG
GCTGTGTATGCCTTTCCGGGAAAATCACATTTTATGATGCACACTGCTTT
GATAAGGGAACTTGTCGAAAGTGGTCATCAGGTGACCATGGTAACAGCTT
TTAGTCTGGAGAAAGAGCAACTTGGCAGCAACTACACGGAGATCTTGATA
GAACCGGTCTACGATTTCTGGCACGATGTTAAGCTGAACTTTGGAGCCCA
ACACCTATTCGAGCTGACCCGCATGACCAACTATGATTTCCTCAAAATGC
TGGAGATTATCGGCCTCAAGACCACCGAACATGCCCTGCGGCAGCCCAAG
GTTCGGTCTCTCATTCATGCCGAGCAAAAGGAAGGAGTCTTCGATCTTCT
CCTGGCCGAGCAGTTCTATCAGGAGGCCTTCTTGGCACTGGCTCATCTGT
ACAAAATACCCGTGGTGACCACGAGCACTTTGGGCTATGAGAATCACATG
AGTCAGATGATGGGTCTGATTACACCTTGGTCCTTTGTACCACACGGTTT
TATGCCCTTCACCGATCGCATGAGTTTCCTGGAGAGGGTGAAGAACTCCT
ATGCATCCTTCTACGAAGACATGGACAGGCTGCTAAACTATTTTCCGAAA
ATGGATGCGGTGGCCAGGGAGTTCTTTGGACCCGTACTGACCGAGGTGCC
CAAGGTCAAGCACATGGAGCGTCAAATCTCAGTGATGCTACTAAACAGTC
ACGCACCGCTGACCACGGCACGTCCCACAGTGGACGCCATGGTGCCAGTG
GGCGGGATGCACATCTATCCACCCAAACCGCTGCCGGCTGACATGCAAGC
CCTCTTGGATGGCGCCACCGAGGGGGCCATCTTCTTCAGCCTGGGCAGCA
ATGTCCAGAGCAAGGACATGCCCGTGGAAATGCTGCGATTGTTCCTGCAG
GTATTCGGTTCGCTCAAGCAGCGGGTATTGTGGAAATTCGAGGATGAGAG
CATTAGCCAATTGCCAGATAACGTGATGGTCAGGAAGTGGCTGCCACAGG
CCGACATTCTGGCCCATCGTCATGTGAAGGTATTCATTACCCACGGTGGC
TTATTTGGCACCCAGGAGGGAGTGCATTATGCTGTGCCCATGCTGGGTAT
ACCCTTCTACTGTGATCAGCACCTTAATATGAACAAAGCGGTTTTGGGCG
GATATGCCATTAGTCTGCACTTCCAATCGATTACCGAGGAAATCCTGCGG
CACTCCTTGGACCAACTTATCCATAATGTGACCTACAAAGAGAACGTTCA
GAGGGTATCGGATATTTTCCGCGATCGTCCGCTGGAGCCGCGAAAAAGTG
CCGTCTATTGGATCGAATATGTCATCCGGCATCGAGGTGCTTCACATATG
AGATCCGCAGGCCTGGATCTCAACTGGTTCCAATTCTATTTGCTGGATGT
CATAGCATTTGTGGCTATCATTGCTTTAGCTGGCGTCATGGCTCTCTCAT
TGGCCATTCGATTACTGATGGGCAGTAATAAGAAACACAGGAAAGCTAAG
CAAAATGCAAGCTTTCTAGACCAT
BO17572.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15661-RB | 1593 | CG15661-PB | 1..1590 | 17..1606 | 7950 | 100 | Plus |
| CG15661-RA | 1593 | CG15661-PA | 1..1590 | 17..1606 | 7950 | 100 | Plus |
| CG4302-RA | 1599 | CG4302-PA | 1081..1205 | 1097..1221 | 205 | 77.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15661-RB | 1899 | CG15661-RB | 223..1812 | 17..1606 | 7950 | 100 | Plus |
| CG15661-RA | 1824 | CG15661-RA | 148..1737 | 17..1606 | 7950 | 100 | Plus |
| CG4302-RA | 1754 | CG4302-RA | 1148..1272 | 1097..1221 | 205 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21215971..21216449 | 1219..741 | 2395 | 100 | Minus |
| 2R | 25286936 | 2R | 21216506..21216968 | 740..278 | 2315 | 100 | Minus |
| 2R | 25286936 | 2R | 21215522..21215911 | 1606..1217 | 1950 | 100 | Minus |
| 2R | 25286936 | 2R | 21217016..21217175 | 278..119 | 800 | 100 | Minus |
| 2R | 25286936 | 2R | 21217232..21217339 | 124..17 | 525 | 99.1 | Minus |
| 2R | 25286936 | 2R | 21213362..21213486 | 1221..1097 | 205 | 77.6 | Minus |
| 2L | 23513712 | 2L | 18512780..18512930 | 1073..1223 | 185 | 74.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:56:41 has no hits.
BO17572.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:17 Download gff for
BO17572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15661-RB | 1..1593 | 17..1610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:47 Download gff for
BO17572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15661-RB | 192..1798 | 8..1618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:22 Download gff for
BO17572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15661-RA | 148..1737 | 17..1608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:17 Download gff for
BO17572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15661-RB | 192..1798 | 8..1618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:40 Download gff for
BO17572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15661-RA | 148..1737 | 17..1608 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:40 Download gff for
BO17572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21215520..21215908 | 1220..1608 | 99 | <- | Minus |
| 2R | 21215971..21216449 | 741..1219 | 100 | <- | Minus |
| 2R | 21216506..21216967 | 279..740 | 100 | <- | Minus |
| 2R | 21217016..21217174 | 120..278 | 100 | <- | Minus |
| 2R | 21217237..21217339 | 17..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:22 Download gff for
BO17572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17103025..17103413 | 1220..1608 | 99 | <- | Minus |
| arm_2R | 17103476..17103954 | 741..1219 | 100 | <- | Minus |
| arm_2R | 17104011..17104472 | 279..740 | 100 | <- | Minus |
| arm_2R | 17104521..17104679 | 120..278 | 100 | <- | Minus |
| arm_2R | 17104742..17104844 | 17..119 | 100 | | Minus |
BO17572.pep Sequence
Translation from 16 to 1624
> BO17572.pep
MQFPLLFGLLLTGTLYSQLELAEGSKILAVYAFPGKSHFMMHTALIRELV
ESGHQVTMVTAFSLEKEQLGSNYTEILIEPVYDFWHDVKLNFGAQHLFEL
TRMTNYDFLKMLEIIGLKTTEHALRQPKVRSLIHAEQKEGVFDLLLAEQF
YQEAFLALAHLYKIPVVTTSTLGYENHMSQMMGLITPWSFVPHGFMPFTD
RMSFLERVKNSYASFYEDMDRLLNYFPKMDAVAREFFGPVLTEVPKVKHM
ERQISVMLLNSHAPLTTARPTVDAMVPVGGMHIYPPKPLPADMQALLDGA
TEGAIFFSLGSNVQSKDMPVEMLRLFLQVFGSLKQRVLWKFEDESISQLP
DNVMVRKWLPQADILAHRHVKVFITHGGLFGTQEGVHYAVPMLGIPFYCD
QHLNMNKAVLGGYAISLHFQSITEEILRHSLDQLIHNVTYKENVQRVSDI
FRDRPLEPRKSAVYWIEYVIRHRGASHMRSAGLDLNWFQFYLLDVIAFVA
IIALAGVMALSLAIRLLMGSNKKHRKAKQNASFLDH
BO17572.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15661-PB | 530 | CG15661-PB | 1..530 | 1..530 | 2750 | 100 | Plus |
| CG15661-PA | 530 | CG15661-PA | 1..530 | 1..530 | 2750 | 100 | Plus |
| CG4302-PA | 532 | CG4302-PA | 11..515 | 10..515 | 1449 | 53.4 | Plus |
| CG6475-PD | 526 | CG6475-PD | 13..503 | 19..510 | 1306 | 50.6 | Plus |
| CG10178-PB | 530 | CG10178-PB | 15..512 | 15..522 | 1088 | 42.8 | Plus |
