Clone BO17575 Report

Search the DGRC for BO17575

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:175
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG17350-RA
Protein status:BO17575.pep: validated full length
Sequenced Size:985

Clone Sequence Records

BO17575.3prime Sequence

908 bp (758 high quality bases) assembled on 2006-10-13

> BO17575.3prime
ATGGTCTAGAAAGCTTGCGGAGAAAGGCCGCTCCAACTTGCCATCCACCA
CCTGGACAACCCCACTGTTGATGACACCCTTGTTGTGCTGATCCGTCTGC
TCTCTTCTGGCTTTGCTATCCCGACGGCGTCTGAACTCCGTGGATGACAT
GCAGTAGCAGGGCTTCCAGCTGGGCCGCCGATAGATCTGTCCCTGCTCCT
GCGGCACTCGCTCCGTGGTCCAAACCGGGACGTAGTGCGTCCAGGTCTCG
CCGTTCCTGTAAATGCTGCCTGCATCGGAACTTCCGCCGGCATAGACGTT
GCCGTGATAGTACTGCGGATAGTAGTCGCCGCGATTGGAGCCCTGGTAGC
CACCTCGATTGGCGCCCTGGTAGCCATGCTGCTCGCCGGAGAAGTTGGGA
TTCCACTGCGACTTGGGATCATATGGCTTGCGGGTCTTGTGCTTTGATTC
GCTGCCACCACGACCCTTGAAAATTGGCACACTGGCGTCCTCCTTGTCGC
CCTGCTGTTGAGCGGAACTGGTCTCGTTCCCGTCCGAATCGGAGGTGATT
TCGAACGTGATGTCCGTGTGGATGCCCACGCGCTTCTTGTGCTTGCCCAA
AACCGTAATTTCCACGCTCTCCTTGGACTCTTTCGTTTGCTGCTGTCCAT
CGCCCGTATCGACGGTGACCCGTACTCCGTGGATCTTGGGGCGATTTCCC
CCGCTGGAAGTTCCGCTGCTGCCCCCGCCTGCATTTCCTCCTCCACCACT
CAGGCTTCGTCCCGTTCCCGGGTCGTAGCTCCCATTGCCAGTTCCGCCCG
CCTGTCCCGGTTGTCCGGTGAGCCCGTCTGATTCTGATTGTTGCTGCCAT
CGCTCTCATCGAAATCCAACTTGAAAGAACATTTACTCGCCTGACCTTGG
ACCCATTG

BO17575.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17350-PA 954 CG17350-RA 152..951 818..19 3975 99.8 Minus
CG17350-PA 954 CG17350-RA 96..152 873..817 285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17350-RA 1115 CG17350-RA 149..1033 902..19 4310 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19382538..19383011 492..19 2370 100 Minus
2L 23513712 2L 19381863..19382131 897..630 1220 97.8 Minus
2L 23513712 2L 19382196..19382335 631..492 685 99.3 Minus
Blast to na_te.dros performed on 2015-02-12 11:25:48 has no hits.

BO17575.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:15 Download gff for BO17575.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17350-PA 61..954 16..908 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:57 Download gff for BO17575.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 143..1033 19..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:44 Download gff for BO17575.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 143..1033 19..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:44 Download gff for BO17575.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19381854..19382131 630..906 96 -> Minus
2L 19382198..19382335 492..629 99 -> Minus
2L 19382539..19383011 19..491 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:57 Download gff for BO17575.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19381854..19382131 630..906 96 -> Minus
arm_2L 19382198..19382335 492..629 99 -> Minus
arm_2L 19382539..19383011 19..491 100   Minus

BO17575.5prime Sequence

845 bp (720 high quality bases) assembled on 2006-10-13

> BO17575.5prime
GAAGTTATCAGTCGACATGAGCTCTTTCACCGCCCACCTGTTGATATTGC
TCCTCGGTGGTCTGCTGCTAACTCATCACTGCGTCCAAGGTCAGGCGAGT
AAAGTGTCCTCCAAGTTGGATTTCGATGAGAGCGATGGCAGCAACAATCA
GAATCAGACGGGCTCACCCGGACAACCGGGACAGGCGGGCGGAACTGGCA
ATGGGAGCTACGACCCGGGAACGGGACGAAGCCTGAGTGGTGGAGGAGGA
AATGCAGGCGGGGGCAGCAGCGGAACTTCCAGCGGGGGAAATCGCCCCAA
GATCCACGGAGTACGGGTCACCGTCGATACGGGCGATGGACAGCAGCAAA
CGAAAGAGTCCAAGGAGAGCGTGGAAATTACGGATTTGGGCAAGCACAAG
AAGCGCGTGGGCATCCACACGGACATCACGTTCGAAATCACCTCCGATTC
GGACGGGAACGAGACCAGTTCCGCTCAACAGCAGGGCGACAAGGAGGACG
CCAGTGTGCCAATTTTCAAGGGTCGTGGTGGCAGCGAATCAAAGCACAAG
ACCCGCAAGCCATATGATCCCAAGTCGCAGTGGAATCCCAACTTCTCCGG
CGAGCAGCATGGCTACCAGGGCGCCAATCGAGGTGGCTACCAGGGCTCCA
ATCGCGGCGACTACTATCCGCAGTACTATCACGGCAACGTCTATGCCGGC
GGAAGTTCCGATGCANGCAGCATTTACAGGAACGGCGAGACCTGGACGCA
CTACGTCCCGGTTTGGACAACGGAGCGAGTGCCGCAGGAGCAGGGACAGA
TCTATCGGCGGCCCAGCTGGAAGCCCTGCTACTGCATGTCATCCA

BO17575.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17350-PA 954 CG17350-RA 1..829 17..845 4101 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17350-RA 1115 CG17350-RA 77..911 12..845 4124 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19382538..19382889 494..845 1734 99.4 Plus
2L 23513712 2L 19381863..19382131 88..356 1345 100 Plus
2L 23513712 2L 19382196..19382335 355..494 700 100 Plus
2L 23513712 2L 19381012..19381086 17..91 375 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:48:09 has no hits.

BO17575.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:16 Download gff for BO17575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17350-PA 1..828 17..844 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:42 Download gff for BO17575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 70..910 3..844 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:49 Download gff for BO17575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 70..910 3..844 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:49 Download gff for BO17575.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19380999..19381084 3..89 94 -> Plus
2L 19381865..19382131 90..356 100 -> Plus
2L 19382198..19382335 357..494 100 -> Plus
2L 19382539..19382888 495..844 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:42 Download gff for BO17575.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19380999..19381084 3..89 94 -> Plus
arm_2L 19381865..19382131 90..356 100 -> Plus
arm_2L 19382198..19382335 357..494 100 -> Plus
arm_2L 19382539..19382888 495..844 99   Plus

BO17575.complete Sequence

985 bp assembled on 2006-10-11

GenBank Submission: FJ634177

> BO17575.complete
GAAGTTATCAGTCGACATGAGCTCTTTCACCGCCCACCTGTTGATATTGC
TCCTCGGTGGTCTGCTGCTAACTCATCACTGCGTCCAAGGTCAGGCGAGT
AAAGTGTCCTCCAAGTTGGATTTCGATGAGAGCGATGGCAGCAACAATCA
GAATCAGACGGGCTCACCCGGACAACCGGGACAGGCGGGCGGAACTGGCA
ATGGGAGCTACGACCCGGGAACGGGACGAAGCCTGAGTGGTGGAGGAGGA
AATGCAGGCGGGGGCAGCAGCGGAACTTCCAGCGGGGGAAATCGCCCCAA
GATCCACGGAGTACGGGTCACCGTCGATACGGGCGATGGACAGCAGCAAA
CGAAAGAGTCCAAGGAGAGCGTGGAAATTACGGATTTGGGCAAGCACAAG
AAGCGCGTGGGCATCCACACGGACATCACGTTCGAAATCACCTCCGATTC
GGACGGGAACGAGACCAGTTCCGCTCAACAGCAGGGCGACAAGGAGGACG
CCAGTGTGCCAATTTTCAAGGGTCGTGGTGGCAGCGAATCAAAGCACAAG
ACCCGCAAGCCATATGATCCCAAGTCGCAGTGGAATCCCAACTTCTCCGG
CGAGCAGCATGGCTACCAGGGCGCCAATCGAGGTGGCTACCAGGGCTCCA
ATCGCGGCGACTACTATCCGCAGTACTATCACGGCAACGTCTATGCCGGC
GGAAGTTCCGATGCAGGCAGCATTTACAGGAACGGCGAGACCTGGACGCA
CTACGTCCCGGTTTGGACCACGGAGCGAGTGCCGCAGGAGCAGGGACAGA
TCTATCGGCGGCCCAGCTGGAAGCCCTGCTACTGCATGTCATCCACGGAG
TTCAGACGCCGTCGGGATAGCAAAGCCAGAAGAGAGCAGACGGATCAGCA
CAACAAGGGTGTCATCAACAGTGGGGTTGTCCAGGTGGTGGATGGCAAGT
TGGAGCGGCCTTTCTCCGCAAGCTTTCTAGACCAT

BO17575.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17350-RA 954 CG17350-PA 1..951 17..967 4755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17350-RA 1115 CG17350-RA 83..1033 17..967 4755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19382538..19383011 494..967 2370 100 Plus
2L 23513712 2L 19381863..19382131 88..356 1345 100 Plus
2L 23513712 2L 19382196..19382335 355..494 700 100 Plus
2L 23513712 2L 19381012..19381086 17..91 375 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:28:31 has no hits.

BO17575.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:18 Download gff for BO17575.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 1..954 17..970 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:34 Download gff for BO17575.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 70..1033 3..967 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:07 Download gff for BO17575.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 83..1033 17..969 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:18 Download gff for BO17575.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 70..1033 3..967 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:28 Download gff for BO17575.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 83..1033 17..969 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:28 Download gff for BO17575.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19381012..19381084 17..89 100 -> Plus
2L 19381865..19382131 90..356 100 -> Plus
2L 19382198..19382335 357..494 100 -> Plus
2L 19382539..19383011 495..969 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:07 Download gff for BO17575.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19381012..19381084 17..89 100 -> Plus
arm_2L 19381865..19382131 90..356 100 -> Plus
arm_2L 19382198..19382335 357..494 100 -> Plus
arm_2L 19382539..19383011 495..969 99   Plus

BO17575.pep Sequence

Translation from 16 to 985

> BO17575.pep
MSSFTAHLLILLLGGLLLTHHCVQGQASKVSSKLDFDESDGSNNQNQTGS
PGQPGQAGGTGNGSYDPGTGRSLSGGGGNAGGGSSGTSSGGNRPKIHGVR
VTVDTGDGQQQTKESKESVEITDLGKHKKRVGIHTDITFEITSDSDGNET
SSAQQQGDKEDASVPIFKGRGGSESKHKTRKPYDPKSQWNPNFSGEQHGY
QGANRGGYQGSNRGDYYPQYYHGNVYAGGSSDAGSIYRNGETWTHYVPVW
TTERVPQEQGQIYRRPSWKPCYCMSSTEFRRRRDSKARREQTDQHNKGVI
NSGVVQVVDGKLERPFSASFLDH

BO17575.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17350-PA 317 CG17350-PA 1..317 1..317 1712 100 Plus