Clone Sequence Records
BO17575.3prime Sequence
908 bp (758 high quality bases) assembled on 2006-10-13
> BO17575.3prime
ATGGTCTAGAAAGCTTGCGGAGAAAGGCCGCTCCAACTTGCCATCCACCA
CCTGGACAACCCCACTGTTGATGACACCCTTGTTGTGCTGATCCGTCTGC
TCTCTTCTGGCTTTGCTATCCCGACGGCGTCTGAACTCCGTGGATGACAT
GCAGTAGCAGGGCTTCCAGCTGGGCCGCCGATAGATCTGTCCCTGCTCCT
GCGGCACTCGCTCCGTGGTCCAAACCGGGACGTAGTGCGTCCAGGTCTCG
CCGTTCCTGTAAATGCTGCCTGCATCGGAACTTCCGCCGGCATAGACGTT
GCCGTGATAGTACTGCGGATAGTAGTCGCCGCGATTGGAGCCCTGGTAGC
CACCTCGATTGGCGCCCTGGTAGCCATGCTGCTCGCCGGAGAAGTTGGGA
TTCCACTGCGACTTGGGATCATATGGCTTGCGGGTCTTGTGCTTTGATTC
GCTGCCACCACGACCCTTGAAAATTGGCACACTGGCGTCCTCCTTGTCGC
CCTGCTGTTGAGCGGAACTGGTCTCGTTCCCGTCCGAATCGGAGGTGATT
TCGAACGTGATGTCCGTGTGGATGCCCACGCGCTTCTTGTGCTTGCCCAA
AACCGTAATTTCCACGCTCTCCTTGGACTCTTTCGTTTGCTGCTGTCCAT
CGCCCGTATCGACGGTGACCCGTACTCCGTGGATCTTGGGGCGATTTCCC
CCGCTGGAAGTTCCGCTGCTGCCCCCGCCTGCATTTCCTCCTCCACCACT
CAGGCTTCGTCCCGTTCCCGGGTCGTAGCTCCCATTGCCAGTTCCGCCCG
CCTGTCCCGGTTGTCCGGTGAGCCCGTCTGATTCTGATTGTTGCTGCCAT
CGCTCTCATCGAAATCCAACTTGAAAGAACATTTACTCGCCTGACCTTGG
ACCCATTG
BO17575.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17350-PA | 954 | CG17350-RA | 152..951 | 818..19 | 3975 | 99.8 | Minus |
CG17350-PA | 954 | CG17350-RA | 96..152 | 873..817 | 285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17350-RA | 1115 | CG17350-RA | 149..1033 | 902..19 | 4310 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:25:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19382538..19383011 | 492..19 | 2370 | 100 | Minus |
2L | 23513712 | 2L | 19381863..19382131 | 897..630 | 1220 | 97.8 | Minus |
2L | 23513712 | 2L | 19382196..19382335 | 631..492 | 685 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:25:48 has no hits.
BO17575.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:15 Download gff for
BO17575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-PA | 61..954 | 16..908 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:57 Download gff for
BO17575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-RA | 143..1033 | 19..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:44 Download gff for
BO17575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-RA | 143..1033 | 19..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:44 Download gff for
BO17575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19381854..19382131 | 630..906 | 96 | -> | Minus |
2L | 19382198..19382335 | 492..629 | 99 | -> | Minus |
2L | 19382539..19383011 | 19..491 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:57 Download gff for
BO17575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19381854..19382131 | 630..906 | 96 | -> | Minus |
arm_2L | 19382198..19382335 | 492..629 | 99 | -> | Minus |
arm_2L | 19382539..19383011 | 19..491 | 100 | | Minus |
BO17575.5prime Sequence
845 bp (720 high quality bases) assembled on 2006-10-13
> BO17575.5prime
GAAGTTATCAGTCGACATGAGCTCTTTCACCGCCCACCTGTTGATATTGC
TCCTCGGTGGTCTGCTGCTAACTCATCACTGCGTCCAAGGTCAGGCGAGT
AAAGTGTCCTCCAAGTTGGATTTCGATGAGAGCGATGGCAGCAACAATCA
GAATCAGACGGGCTCACCCGGACAACCGGGACAGGCGGGCGGAACTGGCA
ATGGGAGCTACGACCCGGGAACGGGACGAAGCCTGAGTGGTGGAGGAGGA
AATGCAGGCGGGGGCAGCAGCGGAACTTCCAGCGGGGGAAATCGCCCCAA
GATCCACGGAGTACGGGTCACCGTCGATACGGGCGATGGACAGCAGCAAA
CGAAAGAGTCCAAGGAGAGCGTGGAAATTACGGATTTGGGCAAGCACAAG
AAGCGCGTGGGCATCCACACGGACATCACGTTCGAAATCACCTCCGATTC
GGACGGGAACGAGACCAGTTCCGCTCAACAGCAGGGCGACAAGGAGGACG
CCAGTGTGCCAATTTTCAAGGGTCGTGGTGGCAGCGAATCAAAGCACAAG
ACCCGCAAGCCATATGATCCCAAGTCGCAGTGGAATCCCAACTTCTCCGG
CGAGCAGCATGGCTACCAGGGCGCCAATCGAGGTGGCTACCAGGGCTCCA
ATCGCGGCGACTACTATCCGCAGTACTATCACGGCAACGTCTATGCCGGC
GGAAGTTCCGATGCANGCAGCATTTACAGGAACGGCGAGACCTGGACGCA
CTACGTCCCGGTTTGGACAACGGAGCGAGTGCCGCAGGAGCAGGGACAGA
TCTATCGGCGGCCCAGCTGGAAGCCCTGCTACTGCATGTCATCCA
BO17575.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17350-PA | 954 | CG17350-RA | 1..829 | 17..845 | 4101 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:48:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17350-RA | 1115 | CG17350-RA | 77..911 | 12..845 | 4124 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19382538..19382889 | 494..845 | 1734 | 99.4 | Plus |
2L | 23513712 | 2L | 19381863..19382131 | 88..356 | 1345 | 100 | Plus |
2L | 23513712 | 2L | 19382196..19382335 | 355..494 | 700 | 100 | Plus |
2L | 23513712 | 2L | 19381012..19381086 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:48:09 has no hits.
BO17575.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:16 Download gff for
BO17575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:42 Download gff for
BO17575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-RA | 70..910 | 3..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:49 Download gff for
BO17575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-RA | 70..910 | 3..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:49 Download gff for
BO17575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19380999..19381084 | 3..89 | 94 | -> | Plus |
2L | 19381865..19382131 | 90..356 | 100 | -> | Plus |
2L | 19382198..19382335 | 357..494 | 100 | -> | Plus |
2L | 19382539..19382888 | 495..844 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:42 Download gff for
BO17575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19380999..19381084 | 3..89 | 94 | -> | Plus |
arm_2L | 19381865..19382131 | 90..356 | 100 | -> | Plus |
arm_2L | 19382198..19382335 | 357..494 | 100 | -> | Plus |
arm_2L | 19382539..19382888 | 495..844 | 99 | | Plus |
BO17575.complete Sequence
985 bp assembled on 2006-10-11
GenBank Submission: FJ634177
> BO17575.complete
GAAGTTATCAGTCGACATGAGCTCTTTCACCGCCCACCTGTTGATATTGC
TCCTCGGTGGTCTGCTGCTAACTCATCACTGCGTCCAAGGTCAGGCGAGT
AAAGTGTCCTCCAAGTTGGATTTCGATGAGAGCGATGGCAGCAACAATCA
GAATCAGACGGGCTCACCCGGACAACCGGGACAGGCGGGCGGAACTGGCA
ATGGGAGCTACGACCCGGGAACGGGACGAAGCCTGAGTGGTGGAGGAGGA
AATGCAGGCGGGGGCAGCAGCGGAACTTCCAGCGGGGGAAATCGCCCCAA
GATCCACGGAGTACGGGTCACCGTCGATACGGGCGATGGACAGCAGCAAA
CGAAAGAGTCCAAGGAGAGCGTGGAAATTACGGATTTGGGCAAGCACAAG
AAGCGCGTGGGCATCCACACGGACATCACGTTCGAAATCACCTCCGATTC
GGACGGGAACGAGACCAGTTCCGCTCAACAGCAGGGCGACAAGGAGGACG
CCAGTGTGCCAATTTTCAAGGGTCGTGGTGGCAGCGAATCAAAGCACAAG
ACCCGCAAGCCATATGATCCCAAGTCGCAGTGGAATCCCAACTTCTCCGG
CGAGCAGCATGGCTACCAGGGCGCCAATCGAGGTGGCTACCAGGGCTCCA
ATCGCGGCGACTACTATCCGCAGTACTATCACGGCAACGTCTATGCCGGC
GGAAGTTCCGATGCAGGCAGCATTTACAGGAACGGCGAGACCTGGACGCA
CTACGTCCCGGTTTGGACCACGGAGCGAGTGCCGCAGGAGCAGGGACAGA
TCTATCGGCGGCCCAGCTGGAAGCCCTGCTACTGCATGTCATCCACGGAG
TTCAGACGCCGTCGGGATAGCAAAGCCAGAAGAGAGCAGACGGATCAGCA
CAACAAGGGTGTCATCAACAGTGGGGTTGTCCAGGTGGTGGATGGCAAGT
TGGAGCGGCCTTTCTCCGCAAGCTTTCTAGACCAT
BO17575.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17350-RA | 954 | CG17350-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17350-RA | 1115 | CG17350-RA | 83..1033 | 17..967 | 4755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19382538..19383011 | 494..967 | 2370 | 100 | Plus |
2L | 23513712 | 2L | 19381863..19382131 | 88..356 | 1345 | 100 | Plus |
2L | 23513712 | 2L | 19382196..19382335 | 355..494 | 700 | 100 | Plus |
2L | 23513712 | 2L | 19381012..19381086 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:28:31 has no hits.
BO17575.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:18 Download gff for
BO17575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-RA | 1..954 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:34 Download gff for
BO17575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-RA | 70..1033 | 3..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:07 Download gff for
BO17575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-RA | 83..1033 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:18 Download gff for
BO17575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-RA | 70..1033 | 3..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:28 Download gff for
BO17575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-RA | 83..1033 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:28 Download gff for
BO17575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19381012..19381084 | 17..89 | 100 | -> | Plus |
2L | 19381865..19382131 | 90..356 | 100 | -> | Plus |
2L | 19382198..19382335 | 357..494 | 100 | -> | Plus |
2L | 19382539..19383011 | 495..969 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:07 Download gff for
BO17575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19381012..19381084 | 17..89 | 100 | -> | Plus |
arm_2L | 19381865..19382131 | 90..356 | 100 | -> | Plus |
arm_2L | 19382198..19382335 | 357..494 | 100 | -> | Plus |
arm_2L | 19382539..19383011 | 495..969 | 99 | | Plus |
BO17575.pep Sequence
Translation from 16 to 985
> BO17575.pep
MSSFTAHLLILLLGGLLLTHHCVQGQASKVSSKLDFDESDGSNNQNQTGS
PGQPGQAGGTGNGSYDPGTGRSLSGGGGNAGGGSSGTSSGGNRPKIHGVR
VTVDTGDGQQQTKESKESVEITDLGKHKKRVGIHTDITFEITSDSDGNET
SSAQQQGDKEDASVPIFKGRGGSESKHKTRKPYDPKSQWNPNFSGEQHGY
QGANRGGYQGSNRGDYYPQYYHGNVYAGGSSDAGSIYRNGETWTHYVPVW
TTERVPQEQGQIYRRPSWKPCYCMSSTEFRRRRDSKARREQTDQHNKGVI
NSGVVQVVDGKLERPFSASFLDH
BO17575.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17350-PA | 317 | CG17350-PA | 1..317 | 1..317 | 1712 | 100 | Plus |