Clone BO17577 Report

Search the DGRC for BO17577

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:175
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG31436-RA
Protein status:BO17577.pep: validated full length
Sequenced Size:1294

Clone Sequence Records

BO17577.3prime Sequence

864 bp (819 high quality bases) assembled on 2006-10-13

> BO17577.3prime
ATGGTCTAGAAAGCTTGCGGCATGGAGTAATCCCAATTGATCCAGTCGAG
CCAGCAATATGGTGACTTCCTTAATGTAGCCTTTAGAAAAAGAGCATTTT
CTTCGCTTTTCTTCATTCTGAAGCAGATCGCCAAAGTCAACGGACTTATC
CCTCAATGCCCACATCAGCGGTAGAAAGGTGCTAATGAGAAAGAACTCGT
AGTACTTGTGTTGATGCAGGCGCTTCCAAAGACCCGATTGACTGGGCATT
ACGCCTTTATAGCCGATCTTCTTTAGAACATCCTGCAGAACGGAGATGTA
ATAATTGATGAGGTCATCCCAGTTATTCCATCGATGCTCCGGCTCCAAAA
GCATGTAAATCGAATAGAGTAGATCGAATGTCAAGGGAAAGAGATTACTG
ATTTGAAAGTCCAGCAGCATGCAGTCCTCTAAGGATACAGTATCCTTATG
CTTGAACATAATGTTTCGAAGGTGCAGGTCTCCGTGGCAAAGTACCCAGT
ACTCGTCTTTTTTCTGGCTCTTTCGAATGTCCTTCCACTCTTCAACAAGT
CGCTCTAGGAAATCGTCCTTGATGCTTTCGAAGTACGGCTTATACTTATT
CAACTCCGGCTCCTTTCCCAAAAGCTCAACGAAGAATTCCATTCCAGTTC
TCATAAAGGGATCATTCAGGACATGTGGCATCTCAAACAGTCCATGGGTG
TACGACTCTAGGAACTCTGGTTGCTCATTCTGCACTTTCAAGCTGACTGC
ATGCCACTTGGCCAGTTTGAAGTAGATGCGTCGTATCTCATCTAATGTGG
CGTCCCGATCCCGTAGCACAATGTAACCCATCTCGGCCAGATCCTCAAAG
ATCAGGACCTGATG

BO17577.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31436-PA 1263 CG31436-RA 415..1260 864..19 4230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31436-RA 1402 CG31436-RA 492..1337 864..19 4230 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25304819..25305346 725..198 2640 100 Minus
3R 32079331 3R 25305407..25305586 198..19 900 100 Minus
3R 32079331 3R 25304628..25304768 864..724 705 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:57:07 has no hits.

BO17577.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:19 Download gff for BO17577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31436-PA 415..1263 15..864 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:55 Download gff for BO17577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31436-RA 492..1345 10..864 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:56 Download gff for BO17577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31436-RA 492..1345 10..864 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:56 Download gff for BO17577.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25305408..25305594 10..197 97   Minus
3R 25304628..25304768 724..864 100 -> Minus
3R 25304821..25305346 198..723 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:55 Download gff for BO17577.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21130350..21130490 724..864 100 -> Minus
arm_3R 21130543..21131068 198..723 100 -> Minus
arm_3R 21131130..21131316 10..197 97   Minus

BO17577.5prime Sequence

846 bp (774 high quality bases) assembled on 2006-10-13

> BO17577.5prime
GAAGTTATCAGTCGACATGTCCGGGAACCCCCAAAACAACCAGTTTAACG
ATGACGAATTGGTGCCACCTGAGTGGCTCAACTCCGAGTTCATGGCTCGC
GTTTTGGAAGGCAATGAGCTGGAGGCCGCGGTCAAGGTTATCGATTTGAC
CTTCTCCCCGGCGAGTGCGAAGGGAGATCACTATGCCAGCATCATGTTCC
GGGCAAGGGTGAAGTACACCAACCGAAAAGGCGAGTTCCAGAAGTCGCTG
ATCATCAAGACAATGCCAGAGGCAGAGGGACACAAGAAGGATATGCTCGG
AGGATCGCCCATATTCGAAACGGAGATGGGATTGTACACAAAGGTGCTGC
CCGAGTTCGAGAGGATCCTTCGACAGGTCGGCGATGACACCCAGCTATAT
GTGAATTGCATATACCACAGCCTGGAGCCGCATCAGGTCCTGATCTTTGA
GGATCTGGCCGAGATGGGTTACATTGTGCTACGGGATCGGGACGCCACAT
TAGATGAGATACGACGCATCTACTTCAAACTGGCCAAGTGGCATGCAGTC
AGCTTGAAAGTGCAGAATGAGCAACCAGAGTTCCTAGAGTCGTACACCCA
TGGACTGTTTGAGATGCCACATGTCCTGAATGATCCCTTTATGAGAACTG
GAATGGAATTCTTCGTTGAGCTTTTGGGAAAGGAGCCGGAGTTGAATAAG
TATAAGCCGTACTTCGAAAGCATCAAGGACGATTTCCTAGAGCGACTTGT
TGAAGAGTGGAAGGACATTCGAAAGAGCCAGAAAAAAGACGAGTACTGGG
TACTTTGCCACGGAGACCTGCACCTTCGAAACATTATGTTCAAGCA

BO17577.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG31436-PA 1263 CG31436-RA 1..830 17..846 4150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31436-RA 1402 CG31436-RA 78..907 17..846 4150 100 Plus
CG13659-RA 1301 CG13659-RA 126..460 134..468 325 73.9 Plus
CG31300-RA 1474 CG31300-RA 219..508 164..453 310 75.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25304214..25304768 17..571 2775 100 Plus
3R 32079331 3R 25304819..25305095 570..846 1385 100 Plus
3R 32079331 3R 25283838..25284127 164..453 310 73.8 Plus
3R 32079331 3R 25285681..25285968 171..458 270 72.9 Plus
3R 32079331 3R 25287749..25287926 281..458 185 73.6 Plus
Blast to na_te.dros performed on 2015-02-08 12:21:46 has no hits.

BO17577.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:19 Download gff for BO17577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31436-PA 1..829 17..845 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:15 Download gff for BO17577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31436-RA 78..906 17..845 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:47 Download gff for BO17577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31436-RA 78..906 17..845 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:47 Download gff for BO17577.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25304214..25304768 17..571 100 -> Plus
3R 25304821..25305094 572..845 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:15 Download gff for BO17577.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21129936..21130490 17..571 100 -> Plus
arm_3R 21130543..21130816 572..845 100   Plus

BO17577.complete Sequence

1294 bp assembled on 2006-10-11

GenBank Submission: FJ638756

> BO17577.complete
GAAGTTATCAGTCGACATGTCCGGGAACCCCCAAAACAACCAGTTTAACG
ATGACGAATTGGTGCCACCTGAGTGGCTCAACTCCGAGTTCATGGCTCGC
GTTTTGGAAGGCAATGAGCTGGAGGCCGCGGTCAAGGTTATCGATTTGAC
CTTCTCCCCGGCGAGTGCGAAGGGAGATCACTATGCCAGCATCATGTTCC
GGGCAAGGGTGAAGTACACCAACCGAAAAGGCGAGTTCCAGAAGTCGCTG
ATCATCAAGACAATGCCAGAGGCAGAGGGACACAAGAAGGATATGCTCGG
AGGATCGCCCATATTCGAAACGGAGATGGGATTGTACACAAAGGTGCTGC
CCGAGTTCGAGAGGATCCTTCGACAGGTCGGCGATGACACCCAGCTATAT
GTGAATTGCATATACCACAGCCTGGAGCCGCATCAGGTCCTGATCTTTGA
GGATCTGGCCGAGATGGGTTACATTGTGCTACGGGATCGGGACGCCACAT
TAGATGAGATACGACGCATCTACTTCAAACTGGCCAAGTGGCATGCAGTC
AGCTTGAAAGTGCAGAATGAGCAACCAGAGTTCCTAGAGTCGTACACCCA
TGGACTGTTTGAGATGCCACATGTCCTGAATGATCCCTTTATGAGAACTG
GAATGGAATTCTTCGTTGAGCTTTTGGGAAAGGAGCCGGAGTTGAATAAG
TATAAGCCGTACTTCGAAAGCATCAAGGACGATTTCCTAGAGCGACTTGT
TGAAGAGTGGAAGGACATTCGAAAGAGCCAGAAAAAAGACGAGTACTGGG
TACTTTGCCACGGAGACCTGCACCTTCGAAACATTATGTTCAAGCATAAG
GATACTGTATCCTTAGAGGACTGCATGCTGCTGGACTTTCAAATCAGTAA
TCTCTTTCCCTTGACATTCGATCTACTCTATTCGATTTACATGCTTTTGG
AGCCGGAGCATCGATGGAATAACTGGGATGACCTCATCAATTATTACATC
TCCGTTCTGCAGGATGTTCTAAAGAAGATCGGCTATAAAGGCGTAATGCC
CAGTCAATCGGGTCTTTGGAAGCGCCTGCATCAACACAAGTACTACGAGT
TCTTTCTCATTAGCACCTTTCTACCGCTGATGTGGGCATTGAGGGATAAG
TCCGTTGACTTTGGCGATCTGCTTCAGAATGAAGAAAAGCGAAGAAAATG
CTCTTTTTCTAAAGGCTACATTAAGGAAGTCACCATATTGCTGGCTCGAC
TGGATCAATTGGGATTACTCCATGCCGCAAGCTTTCTAGACCAT

BO17577.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31436-RA 1263 CG31436-PA 1..1260 17..1276 6300 100 Plus
CG13659-RA 1254 CG13659-PA 106..440 134..468 325 73.1 Plus
CG31300-RA 1269 CG31300-PA 148..437 164..453 310 73.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG31436-RA 1402 CG31436-RA 78..1337 17..1276 6300 100 Plus
CG13659-RA 1301 CG13659-RA 126..460 134..468 325 73.1 Plus
CG31300-RA 1474 CG31300-RA 219..508 164..453 310 73.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25304214..25304768 17..571 2775 100 Plus
3R 32079331 3R 25304819..25305346 570..1097 2640 100 Plus
3R 32079331 3R 25305407..25305586 1097..1276 900 100 Plus
3R 32079331 3R 25283838..25284127 164..453 310 73.8 Plus
3R 32079331 3R 25285681..25285968 171..458 270 72.9 Plus
3R 32079331 3R 25287749..25287926 281..458 185 73.6 Plus
Blast to na_te.dros performed on 2014-11-27 20:22:33 has no hits.

BO17577.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:55 Download gff for BO17577.complete
Subject Subject Range Query Range Percent Splice Strand
CG31436-RA 1..1263 17..1280 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:37 Download gff for BO17577.complete
Subject Subject Range Query Range Percent Splice Strand
CG31436-RA 38..1305 17..1285 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:00 Download gff for BO17577.complete
Subject Subject Range Query Range Percent Splice Strand
CG31436-RA 78..1337 17..1278 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:55 Download gff for BO17577.complete
Subject Subject Range Query Range Percent Splice Strand
CG31436-RA 38..1305 17..1285 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:16 Download gff for BO17577.complete
Subject Subject Range Query Range Percent Splice Strand
CG31436-RA 78..1337 17..1278 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:16 Download gff for BO17577.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25304214..25304768 17..571 100 -> Plus
3R 25304821..25305346 572..1097 100 -> Plus
3R 25305408..25305586 1098..1278 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:00 Download gff for BO17577.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21129936..21130490 17..571 100 -> Plus
arm_3R 21130543..21131068 572..1097 100 -> Plus
arm_3R 21131130..21131308 1098..1278 98   Plus

BO17577.pep Sequence

Translation from 16 to 1294

> BO17577.pep
MSGNPQNNQFNDDELVPPEWLNSEFMARVLEGNELEAAVKVIDLTFSPAS
AKGDHYASIMFRARVKYTNRKGEFQKSLIIKTMPEAEGHKKDMLGGSPIF
ETEMGLYTKVLPEFERILRQVGDDTQLYVNCIYHSLEPHQVLIFEDLAEM
GYIVLRDRDATLDEIRRIYFKLAKWHAVSLKVQNEQPEFLESYTHGLFEM
PHVLNDPFMRTGMEFFVELLGKEPELNKYKPYFESIKDDFLERLVEEWKD
IRKSQKKDEYWVLCHGDLHLRNIMFKHKDTVSLEDCMLLDFQISNLFPLT
FDLLYSIYMLLEPEHRWNNWDDLINYYISVLQDVLKKIGYKGVMPSQSGL
WKRLHQHKYYEFFLISTFLPLMWALRDKSVDFGDLLQNEEKRRKCSFSKG
YIKEVTILLARLDQLGLLHAASFLDH

BO17577.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31436-PA 420 CG31436-PA 1..420 1..420 2232 100 Plus
CG31300-PA 422 CG31300-PA 9..417 9..416 1233 55.7 Plus
CG31104-PA 420 CG31104-PA 4..415 6..416 1201 54.4 Plus
CG11893-PA 416 CG11893-PA 1..411 1..416 1200 52.2 Plus
CG13658-PB 422 CG13658-PB 1..417 1..416 1178 52 Plus