Clone Sequence Records
BO17577.3prime Sequence
864 bp (819 high quality bases) assembled on 2006-10-13
> BO17577.3prime
ATGGTCTAGAAAGCTTGCGGCATGGAGTAATCCCAATTGATCCAGTCGAG
CCAGCAATATGGTGACTTCCTTAATGTAGCCTTTAGAAAAAGAGCATTTT
CTTCGCTTTTCTTCATTCTGAAGCAGATCGCCAAAGTCAACGGACTTATC
CCTCAATGCCCACATCAGCGGTAGAAAGGTGCTAATGAGAAAGAACTCGT
AGTACTTGTGTTGATGCAGGCGCTTCCAAAGACCCGATTGACTGGGCATT
ACGCCTTTATAGCCGATCTTCTTTAGAACATCCTGCAGAACGGAGATGTA
ATAATTGATGAGGTCATCCCAGTTATTCCATCGATGCTCCGGCTCCAAAA
GCATGTAAATCGAATAGAGTAGATCGAATGTCAAGGGAAAGAGATTACTG
ATTTGAAAGTCCAGCAGCATGCAGTCCTCTAAGGATACAGTATCCTTATG
CTTGAACATAATGTTTCGAAGGTGCAGGTCTCCGTGGCAAAGTACCCAGT
ACTCGTCTTTTTTCTGGCTCTTTCGAATGTCCTTCCACTCTTCAACAAGT
CGCTCTAGGAAATCGTCCTTGATGCTTTCGAAGTACGGCTTATACTTATT
CAACTCCGGCTCCTTTCCCAAAAGCTCAACGAAGAATTCCATTCCAGTTC
TCATAAAGGGATCATTCAGGACATGTGGCATCTCAAACAGTCCATGGGTG
TACGACTCTAGGAACTCTGGTTGCTCATTCTGCACTTTCAAGCTGACTGC
ATGCCACTTGGCCAGTTTGAAGTAGATGCGTCGTATCTCATCTAATGTGG
CGTCCCGATCCCGTAGCACAATGTAACCCATCTCGGCCAGATCCTCAAAG
ATCAGGACCTGATG
BO17577.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31436-PA | 1263 | CG31436-RA | 415..1260 | 864..19 | 4230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31436-RA | 1402 | CG31436-RA | 492..1337 | 864..19 | 4230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25304819..25305346 | 725..198 | 2640 | 100 | Minus |
3R | 32079331 | 3R | 25305407..25305586 | 198..19 | 900 | 100 | Minus |
3R | 32079331 | 3R | 25304628..25304768 | 864..724 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:57:07 has no hits.
BO17577.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:19 Download gff for
BO17577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-PA | 415..1263 | 15..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:55 Download gff for
BO17577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-RA | 492..1345 | 10..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:56 Download gff for
BO17577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-RA | 492..1345 | 10..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:56 Download gff for
BO17577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25305408..25305594 | 10..197 | 97 | | Minus |
3R | 25304628..25304768 | 724..864 | 100 | -> | Minus |
3R | 25304821..25305346 | 198..723 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:55 Download gff for
BO17577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21130350..21130490 | 724..864 | 100 | -> | Minus |
arm_3R | 21130543..21131068 | 198..723 | 100 | -> | Minus |
arm_3R | 21131130..21131316 | 10..197 | 97 | | Minus |
BO17577.5prime Sequence
846 bp (774 high quality bases) assembled on 2006-10-13
> BO17577.5prime
GAAGTTATCAGTCGACATGTCCGGGAACCCCCAAAACAACCAGTTTAACG
ATGACGAATTGGTGCCACCTGAGTGGCTCAACTCCGAGTTCATGGCTCGC
GTTTTGGAAGGCAATGAGCTGGAGGCCGCGGTCAAGGTTATCGATTTGAC
CTTCTCCCCGGCGAGTGCGAAGGGAGATCACTATGCCAGCATCATGTTCC
GGGCAAGGGTGAAGTACACCAACCGAAAAGGCGAGTTCCAGAAGTCGCTG
ATCATCAAGACAATGCCAGAGGCAGAGGGACACAAGAAGGATATGCTCGG
AGGATCGCCCATATTCGAAACGGAGATGGGATTGTACACAAAGGTGCTGC
CCGAGTTCGAGAGGATCCTTCGACAGGTCGGCGATGACACCCAGCTATAT
GTGAATTGCATATACCACAGCCTGGAGCCGCATCAGGTCCTGATCTTTGA
GGATCTGGCCGAGATGGGTTACATTGTGCTACGGGATCGGGACGCCACAT
TAGATGAGATACGACGCATCTACTTCAAACTGGCCAAGTGGCATGCAGTC
AGCTTGAAAGTGCAGAATGAGCAACCAGAGTTCCTAGAGTCGTACACCCA
TGGACTGTTTGAGATGCCACATGTCCTGAATGATCCCTTTATGAGAACTG
GAATGGAATTCTTCGTTGAGCTTTTGGGAAAGGAGCCGGAGTTGAATAAG
TATAAGCCGTACTTCGAAAGCATCAAGGACGATTTCCTAGAGCGACTTGT
TGAAGAGTGGAAGGACATTCGAAAGAGCCAGAAAAAAGACGAGTACTGGG
TACTTTGCCACGGAGACCTGCACCTTCGAAACATTATGTTCAAGCA
BO17577.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31436-PA | 1263 | CG31436-RA | 1..830 | 17..846 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31436-RA | 1402 | CG31436-RA | 78..907 | 17..846 | 4150 | 100 | Plus |
CG13659-RA | 1301 | CG13659-RA | 126..460 | 134..468 | 325 | 73.9 | Plus |
CG31300-RA | 1474 | CG31300-RA | 219..508 | 164..453 | 310 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25304214..25304768 | 17..571 | 2775 | 100 | Plus |
3R | 32079331 | 3R | 25304819..25305095 | 570..846 | 1385 | 100 | Plus |
3R | 32079331 | 3R | 25283838..25284127 | 164..453 | 310 | 73.8 | Plus |
3R | 32079331 | 3R | 25285681..25285968 | 171..458 | 270 | 72.9 | Plus |
3R | 32079331 | 3R | 25287749..25287926 | 281..458 | 185 | 73.6 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:21:46 has no hits.
BO17577.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:19 Download gff for
BO17577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-PA | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:15 Download gff for
BO17577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-RA | 78..906 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:47 Download gff for
BO17577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-RA | 78..906 | 17..845 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:47 Download gff for
BO17577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25304214..25304768 | 17..571 | 100 | -> | Plus |
3R | 25304821..25305094 | 572..845 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:15 Download gff for
BO17577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21129936..21130490 | 17..571 | 100 | -> | Plus |
arm_3R | 21130543..21130816 | 572..845 | 100 | | Plus |
BO17577.complete Sequence
1294 bp assembled on 2006-10-11
GenBank Submission: FJ638756
> BO17577.complete
GAAGTTATCAGTCGACATGTCCGGGAACCCCCAAAACAACCAGTTTAACG
ATGACGAATTGGTGCCACCTGAGTGGCTCAACTCCGAGTTCATGGCTCGC
GTTTTGGAAGGCAATGAGCTGGAGGCCGCGGTCAAGGTTATCGATTTGAC
CTTCTCCCCGGCGAGTGCGAAGGGAGATCACTATGCCAGCATCATGTTCC
GGGCAAGGGTGAAGTACACCAACCGAAAAGGCGAGTTCCAGAAGTCGCTG
ATCATCAAGACAATGCCAGAGGCAGAGGGACACAAGAAGGATATGCTCGG
AGGATCGCCCATATTCGAAACGGAGATGGGATTGTACACAAAGGTGCTGC
CCGAGTTCGAGAGGATCCTTCGACAGGTCGGCGATGACACCCAGCTATAT
GTGAATTGCATATACCACAGCCTGGAGCCGCATCAGGTCCTGATCTTTGA
GGATCTGGCCGAGATGGGTTACATTGTGCTACGGGATCGGGACGCCACAT
TAGATGAGATACGACGCATCTACTTCAAACTGGCCAAGTGGCATGCAGTC
AGCTTGAAAGTGCAGAATGAGCAACCAGAGTTCCTAGAGTCGTACACCCA
TGGACTGTTTGAGATGCCACATGTCCTGAATGATCCCTTTATGAGAACTG
GAATGGAATTCTTCGTTGAGCTTTTGGGAAAGGAGCCGGAGTTGAATAAG
TATAAGCCGTACTTCGAAAGCATCAAGGACGATTTCCTAGAGCGACTTGT
TGAAGAGTGGAAGGACATTCGAAAGAGCCAGAAAAAAGACGAGTACTGGG
TACTTTGCCACGGAGACCTGCACCTTCGAAACATTATGTTCAAGCATAAG
GATACTGTATCCTTAGAGGACTGCATGCTGCTGGACTTTCAAATCAGTAA
TCTCTTTCCCTTGACATTCGATCTACTCTATTCGATTTACATGCTTTTGG
AGCCGGAGCATCGATGGAATAACTGGGATGACCTCATCAATTATTACATC
TCCGTTCTGCAGGATGTTCTAAAGAAGATCGGCTATAAAGGCGTAATGCC
CAGTCAATCGGGTCTTTGGAAGCGCCTGCATCAACACAAGTACTACGAGT
TCTTTCTCATTAGCACCTTTCTACCGCTGATGTGGGCATTGAGGGATAAG
TCCGTTGACTTTGGCGATCTGCTTCAGAATGAAGAAAAGCGAAGAAAATG
CTCTTTTTCTAAAGGCTACATTAAGGAAGTCACCATATTGCTGGCTCGAC
TGGATCAATTGGGATTACTCCATGCCGCAAGCTTTCTAGACCAT
BO17577.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:22:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31436-RA | 1263 | CG31436-PA | 1..1260 | 17..1276 | 6300 | 100 | Plus |
CG13659-RA | 1254 | CG13659-PA | 106..440 | 134..468 | 325 | 73.1 | Plus |
CG31300-RA | 1269 | CG31300-PA | 148..437 | 164..453 | 310 | 73.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31436-RA | 1402 | CG31436-RA | 78..1337 | 17..1276 | 6300 | 100 | Plus |
CG13659-RA | 1301 | CG13659-RA | 126..460 | 134..468 | 325 | 73.1 | Plus |
CG31300-RA | 1474 | CG31300-RA | 219..508 | 164..453 | 310 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25304214..25304768 | 17..571 | 2775 | 100 | Plus |
3R | 32079331 | 3R | 25304819..25305346 | 570..1097 | 2640 | 100 | Plus |
3R | 32079331 | 3R | 25305407..25305586 | 1097..1276 | 900 | 100 | Plus |
3R | 32079331 | 3R | 25283838..25284127 | 164..453 | 310 | 73.8 | Plus |
3R | 32079331 | 3R | 25285681..25285968 | 171..458 | 270 | 72.9 | Plus |
3R | 32079331 | 3R | 25287749..25287926 | 281..458 | 185 | 73.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:22:33 has no hits.
BO17577.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:55 Download gff for
BO17577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-RA | 1..1263 | 17..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:37 Download gff for
BO17577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-RA | 38..1305 | 17..1285 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:00 Download gff for
BO17577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-RA | 78..1337 | 17..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:55 Download gff for
BO17577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-RA | 38..1305 | 17..1285 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:16 Download gff for
BO17577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-RA | 78..1337 | 17..1278 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:16 Download gff for
BO17577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25304214..25304768 | 17..571 | 100 | -> | Plus |
3R | 25304821..25305346 | 572..1097 | 100 | -> | Plus |
3R | 25305408..25305586 | 1098..1278 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:00 Download gff for
BO17577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21129936..21130490 | 17..571 | 100 | -> | Plus |
arm_3R | 21130543..21131068 | 572..1097 | 100 | -> | Plus |
arm_3R | 21131130..21131308 | 1098..1278 | 98 | | Plus |
BO17577.pep Sequence
Translation from 16 to 1294
> BO17577.pep
MSGNPQNNQFNDDELVPPEWLNSEFMARVLEGNELEAAVKVIDLTFSPAS
AKGDHYASIMFRARVKYTNRKGEFQKSLIIKTMPEAEGHKKDMLGGSPIF
ETEMGLYTKVLPEFERILRQVGDDTQLYVNCIYHSLEPHQVLIFEDLAEM
GYIVLRDRDATLDEIRRIYFKLAKWHAVSLKVQNEQPEFLESYTHGLFEM
PHVLNDPFMRTGMEFFVELLGKEPELNKYKPYFESIKDDFLERLVEEWKD
IRKSQKKDEYWVLCHGDLHLRNIMFKHKDTVSLEDCMLLDFQISNLFPLT
FDLLYSIYMLLEPEHRWNNWDDLINYYISVLQDVLKKIGYKGVMPSQSGL
WKRLHQHKYYEFFLISTFLPLMWALRDKSVDFGDLLQNEEKRRKCSFSKG
YIKEVTILLARLDQLGLLHAASFLDH
BO17577.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31436-PA | 420 | CG31436-PA | 1..420 | 1..420 | 2232 | 100 | Plus |
CG31300-PA | 422 | CG31300-PA | 9..417 | 9..416 | 1233 | 55.7 | Plus |
CG31104-PA | 420 | CG31104-PA | 4..415 | 6..416 | 1201 | 54.4 | Plus |
CG11893-PA | 416 | CG11893-PA | 1..411 | 1..416 | 1200 | 52.2 | Plus |
CG13658-PB | 422 | CG13658-PB | 1..417 | 1..416 | 1178 | 52 | Plus |