Clone Sequence Records
BO17579.3prime Sequence
756 bp (679 high quality bases) assembled on 2006-10-13
> BO17579.3prime
ATGGTCTAGAAAGCTTGCGAGCTTTGTGGAGTTGCGTGACTTGGTCGATC
TGCGCAGGATGCTAGATCTCAGTTCTCCACCCGTTGAGGCATTCAGGGAT
GCTCCAGTCTGGGTTCCCCTCACAAAAGCCTGAGATCGGACCTCCTCCAC
GTCGGCGTTTCTCTTTTCATCCTCATCGTCGTCCACCTGTTTGGCCAGAC
AGGGGAAGTCCCAAATGCTTTGTCCACGTCCAAACTCCTCACCGTCGCTA
AGGGTTTGTGGCAGGACATGATTTAGGGTCTCCGGCAGTAGGAGCGCCAA
TAAGCCACCAATAATTCCTAAAATTCCAAGGATAATCAGTGGCAGGGCTT
GGGAAATGTTGGCCAGATAAACCACAAATGGTGCTATGATGCTGGCCACA
TAACCCATGATATGGATGAAGGCCACTGCCTGCGCCCTAACCACAGTGGG
CAGGACCTCCGCCGCCCATTGCAAACCAATATTATAGCTAATGTTTACAA
AGAATCGACCCATGATGGCCAAGGCAGCGGAGTATATGCCCACGGGCACC
ACAGTGGCCAATAAGCTGAACACTCCACTAAGGACCATGGAGCTGCAGGC
CAACCAACGGCGTCCGAACCGATCCAGGATCACCGTAAGCAAAGTATCGG
CGGGCAGCTCCGTGAAACAGGCCAGGGTGAAGGTGAAGAAGATGTCCAAA
CCCAGTGATCCCACATTCCTCACATGTCCATCGAAGACTAGGGATATGGC
CATCCA
BO17579.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:52:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6600-PA | 1575 | CG6600-RA | 835..1572 | 756..19 | 3690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:27:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42269-RE | 2362 | CG42269-RE | 1448..2185 | 756..19 | 3690 | 100 | Minus |
| CG10486-RC | 2369 | CG10486-RC | 1664..1775 | 506..395 | 245 | 81.2 | Minus |
| CG10486-RB | 2288 | CG10486-RB | 1583..1694 | 506..395 | 245 | 81.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:26:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6070631..6071368 | 756..19 | 3690 | 100 | Minus |
| 3L | 28110227 | 3L | 5904805..5904916 | 395..506 | 245 | 81.2 | Plus |
Blast to na_te.dros performed on 2015-02-05 01:26:59 has no hits.
BO17579.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:22 Download gff for
BO17579.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6600-PA | 836..1575 | 15..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:03:00 Download gff for
BO17579.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42269-RE | 1449..2189 | 14..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:58:10 Download gff for
BO17579.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42269-RE | 1449..2189 | 14..755 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:58:10 Download gff for
BO17579.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6070632..6071372 | 14..755 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:03:00 Download gff for
BO17579.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6063732..6064472 | 14..755 | 99 | | Minus |
BO17579.5prime Sequence
726 bp (679 high quality bases) assembled on 2006-10-13
> BO17579.5prime
GAAGTTATCAGTCGACATGACCAATGGCGAATACAACAATTGTTACATGT
ACGACGTCAACTATACGGATATACTTGCCCAGGGCAAGGTGATGGCCGAT
CCCAAGTGGCCGCAGGTCAAGTGCCGCCACGGCTGGTCATATAACTTCAC
GGAAATACCCTACGCGACGGTGGCCACCGAGCAGAATTGGGTGTGCGATG
ACGCCGCCCTGCCCACCTACGCCCAGTCCATATTCTTTCTGGGCGCCATC
GTGGGAGGACTGCTCTTTGGCTGGGTGGCGGATCGGTTTGGTCGTATTCC
CGCCCTGATCGGCACCAATATGATGGGTCTCCTGGCCGGCGTGGGCACTG
CCTTTGTCAGCAACTTCTGGGAGTTTGCTATCATGCGATTCTTCGTCGGA
TTCGCCTTTGACAACTGCTTCACAATGATGTACATATTGGTTCTCGAGTA
CGTTGGTCCCAAGTACCGCACCTTTGTGGCCAATATGTCGATCGCTATCT
TCTTCACTGGAGCCGCCTGCCTTCTTCCCTGGATTGCCTACTTTTTGGCA
GATTGGAAACTCCTGGCCATCGTGACCTCTGCTCCGCTACTTTTGGCTAT
ATTCACCCCATTCGTGGTACCCGAATCAGCTCGTTGGTTAGTCTCCCAGG
GAAAAGTGGACAAGGCCGTGGGAATCCTGAAGAAACTTGAGAAGGGCAAT
GGGCGTCAGGTGCCCCCTCAGACATA
BO17579.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:52:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6600-PA | 1575 | CG6600-RA | 1..710 | 17..726 | 3550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:33:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42269-RE | 2362 | CG42269-RE | 613..1323 | 16..726 | 3555 | 100 | Plus |
| CG10486-RB | 2288 | CG10486-RB | 894..963 | 415..484 | 185 | 84.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6069468..6069892 | 16..440 | 2125 | 100 | Plus |
| 3L | 28110227 | 3L | 6070220..6070506 | 440..726 | 1435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:33:44 has no hits.
BO17579.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:23 Download gff for
BO17579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6600-PA | 1..709 | 17..725 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:57:04 Download gff for
BO17579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42269-RE | 607..1322 | 9..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:30 Download gff for
BO17579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42269-RE | 607..1322 | 9..725 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:30 Download gff for
BO17579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6069462..6069892 | 9..440 | 99 | -> | Plus |
| 3L | 6070221..6070505 | 441..725 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:57:04 Download gff for
BO17579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6062562..6062992 | 9..440 | 99 | -> | Plus |
| arm_3L | 6063321..6063605 | 441..725 | 100 | | Plus |
BO17579.complete Sequence
1606 bp assembled on 2007-10-25
GenBank Submission: FJ634178
> BO17579.complete
GAAGTTATCAGTCGACATGACCAATGGCGAATACAACAATTGTTACATGT
ACGACGTCAACTATACGGATATACTTGCCCAGGGCAAGGTGATGGCCGAT
CCCAAGTGGCCGCAGGTCAAGTGCCGCCACGGCTGGTCATATAACTTCAC
GGAAATACCCTACGCGACGGTGGCCACCGAGCAGAATTGGGTGTGCGATG
ACGCCGCCCTGCCCACCTACGCCCAGTCCATATTCTTTCTGGGCGCCATC
GTGGGAGGACTGCTCTTTGGCTGGGTGGCGGATCGGTTTGGTCGTATTCC
CGCCCTGATCGGCACCAATATGATGGGTCTCCTGGCCGGCGTGGGCACTG
CCTTTGTCAGCAACTTCTGGGAGTTTGCTATCATGCGATTCTTCGTCGGA
TTCGCCTTTGACAACTGCTTCACAATGATGTACATATTGGTTCTCGAGTA
CGTTGGTCCCAAGTACCGCACCTTTGTGGCCAATATGTCGATCGCTATCT
TCTTCACTGGAGCCGCCTGCCTTCTTCCCTGGATTGCCTACTTTTTGGCA
GATTGGAAACTCCTGGCCATCGTGACCTCTGCTCCGCTACTTTTGGCTAT
ATTCACCCCATTCGTGGTACCCGAATCAGCTCGTTGGTTAGTCTCCCAGG
GAAAAGTGGACAAGGCCGTGGGAATCCTGAAGAAACTTGAGAAGGGCAAT
GGGCGTCAGGTGCCCCCTCAGACATATCAAATCTTTACGGACAGCTGTAA
GAGGATGCAGGAGCAGGAGGCCCAGAATGGCAAATACTCTGTACTGGATC
TCTTTAAGTCACCAAGATTGCGGCGAACTACTCTGCTGCTTATTGTTATC
TGGATGGCCATATCCCTAGTCTTCGATGGACATGTGAGGAATGTGGGATC
ACTGGGTTTGGACATCTTCTTCACCTTCACCCTGGCCTGTTTCACGGAGC
TGCCCGCCGATACTTTGCTTACGGTGATCCTGGATCGGTTCGGACGCCGT
TGGTTGGCCTGCAGCTCCATGGTCCTTAGTGGAGTGTTCAGCTTATTGGC
CACTGTGGTGCCCGTGGGCATATACTCCGCTGCCTTGGCCATCATGGGTC
GATTCTTTGTAAACATTAGCTATAATATTGGTTTGCAATGGGCGGCGGAG
GTCCTGCCCACTGTGGTTAGGGCGCAGGCAGTGGCCTTCATCCATATCAT
GGGTTATGTGGCCAGCATCATAGCACCATTTGTGGTTTATCTGGCCAACA
TTTCCCAAGCCCTGCCACTGATTATCCTTGGAATTTTAGGAATTATTGGT
GGCTTATTGGCGCTCCTACTGCCGGAGACCCTAAATCATGTCCTGCCACA
AACCCTTAGCGACGGTGAGGAGTTTGGACGTGGACAAAGCATTTGGGACT
TCCCCTGTCTGGCCAAACAGGTGGACGACGATGAGGATGAAAAGAGAAAC
GCCGACGTGGAGGAGGTCCGATCTCAGGCTTTTGTGAGGGGAACCCAGAC
TGGAGCATCCCTGAATGCCTCAACGGGTGGAGAACTGAGATCTAGCATCC
TGCGCAGATCGACCAAGTCACGCAACTCCACAAAGCTCGCAAGCTTTCTA
GACCAT
BO17579.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42269-RE | 1989 | CG42269-PE | 414..1986 | 16..1588 | 7865 | 100 | Plus |
| CG10486-RB | 2121 | CG10486-PB | 1583..1694 | 1101..1212 | 245 | 81.2 | Plus |
| CG10486-RB | 2121 | CG10486-PB | 894..963 | 415..484 | 185 | 84.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42269-RE | 2362 | CG42269-RE | 613..2185 | 16..1588 | 7865 | 100 | Plus |
| CG10486-RC | 2369 | CG10486-RC | 1664..1775 | 1101..1212 | 245 | 81.2 | Plus |
| CG10486-RB | 2288 | CG10486-RB | 1583..1694 | 1101..1212 | 245 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6070220..6071368 | 440..1588 | 5745 | 100 | Plus |
| 3L | 28110227 | 3L | 6069468..6069892 | 16..440 | 2125 | 100 | Plus |
| 3L | 28110227 | 3L | 5904805..5904916 | 1212..1101 | 245 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:36:01 has no hits.
BO17579.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:31 Download gff for
BO17579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42269-RE | 408..1989 | 9..1592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:16 Download gff for
BO17579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42269-RE | 408..1990 | 9..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:51 Download gff for
BO17579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42269-RE | 614..2185 | 17..1590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:41 Download gff for
BO17579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42269-RE | 415..1986 | 17..1590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:52 Download gff for
BO17579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42269-RE | 614..2185 | 17..1590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:52 Download gff for
BO17579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6069469..6069892 | 17..440 | 100 | -> | Plus |
| 3L | 6070221..6071368 | 441..1590 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:51 Download gff for
BO17579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6062569..6062992 | 17..440 | 100 | -> | Plus |
| arm_3L | 6063321..6064468 | 441..1590 | 99 | | Plus |
BO17579.pep Sequence
Translation from 16 to 1606
> BO17579.pep
MTNGEYNNCYMYDVNYTDILAQGKVMADPKWPQVKCRHGWSYNFTEIPYA
TVATEQNWVCDDAALPTYAQSIFFLGAIVGGLLFGWVADRFGRIPALIGT
NMMGLLAGVGTAFVSNFWEFAIMRFFVGFAFDNCFTMMYILVLEYVGPKY
RTFVANMSIAIFFTGAACLLPWIAYFLADWKLLAIVTSAPLLLAIFTPFV
VPESARWLVSQGKVDKAVGILKKLEKGNGRQVPPQTYQIFTDSCKRMQEQ
EAQNGKYSVLDLFKSPRLRRTTLLLIVIWMAISLVFDGHVRNVGSLGLDI
FFTFTLACFTELPADTLLTVILDRFGRRWLACSSMVLSGVFSLLATVVPV
GIYSAALAIMGRFFVNISYNIGLQWAAEVLPTVVRAQAVAFIHIMGYVAS
IIAPFVVYLANISQALPLIILGILGIIGGLLALLLPETLNHVLPQTLSDG
EEFGRGQSIWDFPCLAKQVDDDEDEKRNADVEEVRSQAFVRGTQTGASLN
ASTGGELRSSILRRSTKSRNSTKLASFLDH
BO17579.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42269-PE | 662 | CG42269-PE | 139..662 | 1..524 | 2714 | 100 | Plus |
| CG10486-PB | 706 | CG10486-PB | 166..670 | 3..519 | 1159 | 46 | Plus |
| CG5592-PA | 540 | CG5592-PA | 79..539 | 3..472 | 908 | 38.3 | Plus |
| CG6231-PF | 585 | CG6231-PF | 95..538 | 40..475 | 880 | 39.6 | Plus |
| CG6231-PE | 585 | CG6231-PE | 95..538 | 40..475 | 880 | 39.6 | Plus |
