Clone Sequence Records
BO17605.complete Sequence
1903 bp assembled on 2010-07-15
GenBank Submission: KX799796
> BO17605.complete
GAAGTTATCAGTCGACATGGGCGACCTGCCGGGCTCGGGCTCCACCGCTC
AACCACGGGATGCTGCTGTCACCGGTACCGGTGGTAATTCCACGGCTGGT
GGCGGCTCCTCCGTTGGATCTACGGCAGTGGACCGACCTCCGTCGCCCGC
CCGCCTCTCTCACACGTCCGAGAAACATCCGAAGGTCACGCTCACTGAAC
TAAATATGCTACGGCGCCATCGGGAGCTCTGCGATGTGGTGCTCAACGTG
GGCGGACGGAAGATCTTTGCCCACCGGGTAATCCTGTCCGCCTGCAGCTC
CTACTTCTGTGCCATGTTCACTGGCGAATTGGAGGAATCGCGCCAGACTG
AGGTCACCATACGCGACATCGATGAGAATGCCATGGAGCTGCTCATCGAC
TTTTGTTACACCGCCCACATAATCGTCGAGGAGTCGAATGTCCAGACCCT
CCTTCCCGCCGCCTGCCTGCTTCAACTGGTTGAGATTCAGGACATCTGCT
GCGAGTTCCTCAAACGGCAATTGGATCCCACCAACTGCCTGGGCATACGC
GCCTTTGCCGACACACACTCCTGCCGGGAACTTCTACGGATCGCCGACAA
ATTCACGCAGCACAACTTCCAGGAGGTGATGGAGAGCGAGGAGTTTCTGC
TGCTCCCCGTCGGCCAGCTGGTGGACATCATTTGCAGCGACGAGCTAAAC
GTGCGCTCCGAGGAGCAGGTCTTCAACGCGGTCATGTCCTGGCTCAAGTA
CAATGTCGCCGAGCGGCGACAACATCTGGCACAGGTGCTCCAACACGTCC
GTCTGCCTCTGCTGTCGCCAAAGTTCCTGGTTGGCACGGTGGGCTCTGAT
CTCCTGGTGCGCAGCGACGAGGCCTGCCGGGATTTGGTGGATGAGGCTAA
GAACTATCTGTTGCTTCCGCAGGAGCGACCGCTGATGCAGGGTCCACGCA
CCAGACCGCGAAAGCCAACTCGACGAGGCGAAGTCCTGTTCGCCGTGGGC
GGTTGGTGTTCCGGCGATGCTATTGCCTCCGTGGAGCGTTTCGATCCTCA
GACCAACGACTGGAAAATGGTCGCTCCCATGAGCAAACGACGCTGCGGAG
TTGGCGTGGCCGTGTTAAATGATCTACTTTACGCCGTGGGCGGTCACGAT
GGCCAGAGCTATCTGAATAGCATCGAGCGTTATGATCCACAAACGAATCA
ATGGTCCTGCGACGTTGCGCCCACCACTTCCTGCCGCACCAGCGTCGGCG
TGGCTGTGCTCGACGGCTTCTTGTACGCGGTGGGTGGCCAGGATGGCGTT
CAATGTTTGAACCACGTGGAGCGCTACGATCCAAAAGAGAACAAATGGTC
GAAAGTGGCACCGATGACAACAAGGCGACTGGGAGTGGCGGTAGCCGTGC
TTGGAGGATTTCTCTACGCAATTGGCGGCTCCGATGGACAGTGCCCGTTG
AACACCGTAGAGCGATATGATCCCAGACACAACAAATGGGTAGCAGTCAG
CCCGATGTCAACGCGACGCAAGCACCTGGGCTGTGCTGTGTTCAATAACT
ACATTTACGCCGTCGGCGGGCGAGACGATTGCATGGAGCTCTCGTCCGCC
GAGCGCTACAATCCACTGACCAATACCTGGAGCCCCATCGTGGCCATGAC
CTCCCGCCGCAGTGGGGTTGGCCTGGCCGTCGTCAATGGACAGCTGTATG
CTGTGGGCGGCTTTGATGGTTCCGCCTATTTGAAAACCATCGAGGTCTAC
GACCCAGAGACGAACCAATGGCGTTTGTGCGGCTGCATGAACTACCGCCG
ACTGGGCGGCGGCGTGGGCGTTATGCGTGCCCCTCAGACTGAGAACTATA
TGTGGTGCGAAAATAGTTTTAAGCAACCGAATTCCGCAAGCTTTCTAGAC
CAT
BO17605.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:32:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dbo-RA | 1872 | CG6224-PA | 1..1869 | 17..1885 | 9345 | 100 | Plus |
| dbo-RB | 1863 | CG6224-PB | 1..1839 | 17..1855 | 9195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dbo-RA | 3650 | CG6224-RA | 267..2135 | 17..1885 | 9345 | 100 | Plus |
| dbo-RB | 3186 | CG6224-RB | 267..2105 | 17..1855 | 9195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15828318..15829040 | 65..787 | 3615 | 100 | Plus |
| 3L | 28110227 | 3L | 15829183..15829877 | 782..1476 | 3475 | 100 | Plus |
| 3L | 28110227 | 3L | 15830270..15830489 | 1666..1885 | 1100 | 100 | Plus |
| 3L | 28110227 | 3L | 15830013..15830207 | 1474..1668 | 975 | 100 | Plus |
| 3L | 28110227 | 3L | 15828003..15828051 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:32:03 has no hits.
BO17605.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:42:26 Download gff for
BO17605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbo-RA | 275..2143 | 17..1887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:20 Download gff for
BO17605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbo-RA | 267..2135 | 17..1887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:06 Download gff for
BO17605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbo-RA | 267..2135 | 17..1887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:06 Download gff for
BO17605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15828003..15828051 | 17..65 | 100 | -> | Plus |
| 3L | 15828319..15829037 | 66..784 | 100 | -> | Plus |
| 3L | 15829186..15829877 | 785..1476 | 100 | -> | Plus |
| 3L | 15830016..15830205 | 1477..1666 | 100 | -> | Plus |
| 3L | 15830271..15830489 | 1667..1887 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:20 Download gff for
BO17605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15821103..15821151 | 17..65 | 100 | -> | Plus |
| arm_3L | 15821419..15822137 | 66..784 | 100 | -> | Plus |
| arm_3L | 15822286..15822977 | 785..1476 | 100 | -> | Plus |
| arm_3L | 15823116..15823305 | 1477..1666 | 100 | -> | Plus |
| arm_3L | 15823371..15823589 | 1667..1887 | 99 | | Plus |
BO17605.3prime Sequence
693 bp (692 high quality bases) assembled on 2006-10-13
> BO17605.3prime
ATGGTCTAGAAAGCTTGCGGAATTCGGTTGCTTAAAACTATTTTCGCACC
ACATATAGTTCTCAGTCTGAGGGGCACGCATAACGCCCACGCCGCCGCCC
AGTCGGCGGTAGTTCATGCAGCCGCACAAACGCCATTGGTTCGTCTCTGG
GTCGTAGACCTCGATGGTTTTCAAATAGGCGGAACCATCAAAGCCGCCCA
CAGCATACAGCTGTCCATTGACGACGGCCAGGCCAACCCCACTGCGGCGG
GAGGTCATGGCCACGATGGGGCTCCAGGTATTGGTCAGTGGATTGTAGCG
CTCGGCGGACGAGAGCTCCATGCAATCGTCTCGCCCGCCGACGGCGTAAA
TGTAGTTATTGAACACAGCACAGCCCAGGTGCTTGCGTCGCGTTGACATC
GGGCTGACTGCTACCCATTTGTTGTGTCTGGGATCATATCGCTCTACGGT
GTTCAACGGGCACTGTCCATCGGAGCCGCCAATTGCGTAGAGAAATCCTC
CAAGCACGGCTACCGCCACTCCCAGTCGCCTTGTTGTCATCGGTGCCACT
TTCGACCATTTGTTCTCTTTTGGATCGTAGCGCTCCACGTGGTTCATACA
TTGAACGCCATCCTGGCCACCCACCGCGTACAAGAAGCCGTCGAGCACAG
CCACGCCGACGCTGGTGCGGCAGGAAGTGGTGGGCGCAACGTC
BO17605.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:54:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6224-PA | 1872 | dbo-RA | 1195..1869 | 693..19 | 3350 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:31:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dbo-RA | 3650 | CG6224-RA | 1461..2135 | 693..19 | 3360 | 99.9 | Minus |
| dbo-RB | 3186 | CG6224-RB | 1461..2105 | 693..49 | 3210 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15829612..15829877 | 693..428 | 1315 | 99.6 | Minus |
| 3L | 28110227 | 3L | 15830270..15830489 | 238..19 | 1100 | 100 | Minus |
| 3L | 28110227 | 3L | 15830013..15830207 | 430..236 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:31:00 has no hits.
BO17605.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:41 Download gff for
BO17605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6224-PA | 1195..1872 | 16..693 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:02:19 Download gff for
BO17605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbo-RA | 1461..2146 | 8..693 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:35:15 Download gff for
BO17605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbo-RA | 1461..2146 | 8..693 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:35:15 Download gff for
BO17605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15829612..15829877 | 428..693 | 99 | -> | Minus |
| 3L | 15830016..15830205 | 238..427 | 100 | -> | Minus |
| 3L | 15830271..15830500 | 8..237 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:02:19 Download gff for
BO17605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15823116..15823305 | 238..427 | 100 | -> | Minus |
| arm_3L | 15822712..15822977 | 428..693 | 99 | -> | Minus |
| arm_3L | 15823371..15823600 | 8..237 | 97 | | Minus |
BO17605.pep Sequence
Translation from 16 to 1903
> BO17605.pep
MGDLPGSGSTAQPRDAAVTGTGGNSTAGGGSSVGSTAVDRPPSPARLSHT
SEKHPKVTLTELNMLRRHRELCDVVLNVGGRKIFAHRVILSACSSYFCAM
FTGELEESRQTEVTIRDIDENAMELLIDFCYTAHIIVEESNVQTLLPAAC
LLQLVEIQDICCEFLKRQLDPTNCLGIRAFADTHSCRELLRIADKFTQHN
FQEVMESEEFLLLPVGQLVDIICSDELNVRSEEQVFNAVMSWLKYNVAER
RQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDEACRDLVDEAKNYLLL
PQERPLMQGPRTRPRKPTRRGEVLFAVGGWCSGDAIASVERFDPQTNDWK
MVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDV
APTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSKVAPM
TTRRLGVAVAVLGGFLYAIGGSDGQCPLNTVERYDPRHNKWVAVSPMSTR
RKHLGCAVFNNYIYAVGGRDDCMELSSAERYNPLTNTWSPIVAMTSRRSG
VGLAVVNGQLYAVGGFDGSAYLKTIEVYDPETNQWRLCGCMNYRRLGGGV
GVMRAPQTENYMWCENSFKQPNSASFLDH
BO17605.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:23:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dbo-PA | 623 | CG6224-PA | 1..623 | 1..623 | 3305 | 100 | Plus |
| dbo-PB | 620 | CG6224-PB | 1..613 | 1..613 | 3248 | 100 | Plus |
| CG15097-PC | 617 | CG15097-PC | 14..602 | 19..603 | 1211 | 41.7 | Plus |
| CG15097-PD | 734 | CG15097-PD | 14..602 | 19..603 | 1211 | 41.7 | Plus |
| CG15097-PE | 743 | CG15097-PE | 14..602 | 19..603 | 1211 | 41.7 | Plus |
| CG15097-PC | 617 | CG15097-PC | 465..605 | 324..465 | 277 | 43 | Plus |
| CG15097-PD | 734 | CG15097-PD | 465..605 | 324..465 | 277 | 43 | Plus |
