Clone Sequence Records
BO17606.3prime Sequence
753 bp (726 high quality bases) assembled on 2006-10-13
> BO17606.3prime
ATGGTCTAGAAAGCTTGCCTGGACCGTTTCGTGACCTGAACTCGGCTGCC
TCACTTGTTGTTGCTGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTGT
TGCATGTGTCGCAGGCGAAACAGTCGCAGGGTCATCCAGGAGGCCAGTGT
TCCGGTCACCGGCATGGGTGTCTGCTTCTCCAGCGCCTCCTTTTGCAGCT
GATAGCGATATAGCAGGGATCCGGCCACCAGAGCGGACACGATCGTTGTC
GAAATGACAACGATGAAGAGAATGCTGAAGCCGGGCACTGGCATACAAAT
GCCGTAGACAACCTCCTCGCTAATCTTGCCCTGGAACACGGTGACCGCCT
CCTGTTTGGAGTCCGGCGAGAAGGCCAAATCCGCCTCGGATATAACATCG
TACAGACCGCTGACGCCCACATCGGCACTGCGCACCTTGCGATCGGAAAT
GACCAACGAACGACGGCGACGGCTCTTGGAGGAATCATTGCTGGCTGCTG
CACCTCCTTCACCTGTCAGCTTATCCTCCTGCTGCGTTTTCTCTTCCTTC
TCCTTCTCCTCTTCCTCCTCCTTGTCCAAATCGATGTGATCCTCGCGTGG
CTGCTTCAACGCCTCCGCCTGTGGTCTGTAGACGGGTCGTGGCACATCCT
CATCGCCATGACCATGTGGCTCCAGGGAGCGGGGTCCCGCCATCGGTACA
CCCATACGTTTCTGGGCCTCCAGCTGCCGTGGACCGTGTGGGAACTTGCC
GCT
BO17606.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:54:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9369-PA | 2049 | m-RA | 1312..2046 | 753..19 | 3675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
m-RA | 3405 | CG9369-RA | 1747..2481 | 753..19 | 3675 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11767850..11768584 | 753..19 | 3675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:24:22 has no hits.
BO17606.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:41 Download gff for
BO17606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9369-PA | 1312..2049 | 16..753 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:19:21 Download gff for
BO17606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m-RA | 1747..2481 | 19..753 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:31:10 Download gff for
BO17606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m-RA | 1747..2481 | 19..753 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:31:10 Download gff for
BO17606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11767850..11768584 | 19..753 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:19:21 Download gff for
BO17606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11661883..11662617 | 19..753 | 100 | | Minus |
BO17606.5prime Sequence
774 bp (717 high quality bases) assembled on 2006-10-13
> BO17606.5prime
GAAGTTATCAGTCGACATGTGGAGCCCACAAAAAGGCCCTACACGACTGT
GGGACCTTAGGTTTAGTAGCTGTATATTTATCTTACACTTAATGTTTAGT
TTAGTCATAGCTGGTAATGAACTGTGGCCCATGGAACGGCCAGACGGAAT
GCCCAATATCGTCTCACTGGAGGTGATGTGCGGCAAGGATCACATGGATG
TACATCTCACCTTTTCGCATCCATTCGAGGGCATCGTCAGCTCCAAAGGA
CAACACAGCGATCCGCGTTGCGTTTATGTGCCGCCCTCAACGGGCAAGAC
GTTCTTCTCCTTCCGCATCTCGTACTCCCGCTGCGGCACCAAGCCGGATC
TCAACGGACAGTTCTATGAGAATACGGTGGTGGTTCAGTACGACAAGGAT
CTGCTGGAAGTCTGGGATGAGGCTAAGCGATTGCGATGCGAGTGGTTCAA
TGACTACGAGAAGACCGCCTCCAAGCCACCGATGGTCATTGCCGATCTCG
ATGTTATCCAACTGGATTTCCGTGGTGACAATGTGGACTGCTGGATGGAG
ATTCAGCATGGCAAGGGACCCTGGGCGCCGCCTGTTAGTGGAATTGTACC
ACTCGGCTCAACTTTAACCCTGGTGGTGGCCATCAATGATTATCGAGGCG
AATTCGATATGCGTGTGAAATCCTGCGTGGCCTCCGATGGATCTGGTCAT
GTGATCAACCTGTCCGATGAATTTGGCTGCGTGCTGCGACCCAAGATGAT
CTCACGCTTCCTGAAGGCTCGTGC
BO17606.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9369-PA | 2049 | m-RA | 1..758 | 17..774 | 3790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
m-RA | 3405 | CG9369-RA | 434..1193 | 15..774 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11766326..11766481 | 94..249 | 780 | 100 | Plus |
X | 23542271 | X | 11766750..11766900 | 376..526 | 755 | 100 | Plus |
X | 23542271 | X | 11766549..11766684 | 245..380 | 680 | 100 | Plus |
X | 23542271 | X | 11767168..11767296 | 646..774 | 645 | 100 | Plus |
X | 23542271 | X | 11766978..11767102 | 524..648 | 625 | 100 | Plus |
X | 23542271 | X | 11763202..11763281 | 15..94 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:34:34 has no hits.
BO17606.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:42 Download gff for
BO17606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9369-PA | 1..758 | 17..774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:41:17 Download gff for
BO17606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m-RA | 434..1193 | 15..774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:06 Download gff for
BO17606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m-RA | 434..1193 | 15..774 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:06 Download gff for
BO17606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11763202..11763281 | 15..94 | 100 | -> | Plus |
X | 11766327..11766480 | 95..248 | 100 | -> | Plus |
X | 11766553..11766680 | 249..376 | 100 | -> | Plus |
X | 11766751..11766898 | 377..524 | 100 | -> | Plus |
X | 11766979..11767101 | 525..647 | 100 | -> | Plus |
X | 11767170..11767296 | 648..774 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:41:17 Download gff for
BO17606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11661012..11661134 | 525..647 | 100 | -> | Plus |
arm_X | 11661203..11661329 | 648..774 | 100 | | Plus |
arm_X | 11660586..11660713 | 249..376 | 100 | -> | Plus |
arm_X | 11660784..11660931 | 377..524 | 100 | -> | Plus |
arm_X | 11657235..11657314 | 15..94 | 100 | -> | Plus |
arm_X | 11660360..11660513 | 95..248 | 100 | -> | Plus |
BO17606.complete Sequence
2080 bp assembled on 2007-03-23
GenBank Submission: FJ634180
> BO17606.complete
GAAGTTATCAGTCGACATGTGGAGCCCACAAAAAGGCCCTACACGACTGT
GGGACCTTAGGTTTAGTAGCTGTATATTTATCTTACACTTAATGTTTAGT
TTAGTCATAGCTGGTAATGAACTGTGGCCCATGGAACGGCCAGACGGAAT
GCCCAATATCGTCTCACTGGAGGTGATGTGCGGCAAGGATCACATGGATG
TACATCTCACCTTTTCGCATCCATTCGAGGGCATCGTCAGCTCCAAAGGA
CAACACAGCGATCCGCGTTGCGTTTATGTGCCGCCCTCAACGGGCAAGAC
GTTCTTCTCCTTCCGCATCTCGTACTCCCGCTGCGGCACCAAGCCGGATC
TCAACGGACAGTTCTATGAGAATACGGTGGTGGTTCAGTACGACAAGGAT
CTGCTGGAAGTCTGGGATGAGGCTAAGCGATTGCGATGCGAGTGGTTCAA
TGACTACGAGAAGACCGCCTCCAAGCCACCGATGGTCATTGCCGATCTCG
ATGTTATCCAACTGGATTTCCGTGGTGACAATGTGGACTGCTGGATGGAG
ATTCAGCATGGCAAGGGACCCTGGGCGCCGCCTGTTAGTGGAATTGTACC
ACTCGGCTCAACTTTAACCCTGGTGGTGGCCATCAATGATTATCGAGGCG
AATTCGATATGCGTGTGAAATCCTGCGTGGCCTCCGATGGATCTGGTCAT
GTGATCAACCTGTCCGATGAATTTGGCTGCGTGCTGCGACCCAAGATGAT
CTCACGCTTCCTGAAGGCTCGTGCGCCCGACGAGAGGGCCACCGTGATCA
CCTATGCCTTCTTCCATGCCTTCAAGTTCCCGGATGCCCTCAGTGTGCAC
ATCAAGTGCAAGGTGGAGATTTGTCGCCACGGCTGTCTCGATCATTGCCA
GAACACGGGCGTGGGCGGTGGTGGCGGCGGATCCGGCGAGAGCCTGGGAT
TGGGTCTCGGCCTGGGACTGACCAATGCCAATGAGCGTAAGGATGTGCAC
ATGTCGGATGCCTTGGGCAGTAGCAGCAACGATCTGCTCAGGGATTTGGC
ACTGCCGCCGGGCGGTCAACACGGCATGGGCATGGGAATGGGTCCAGATC
ATGACATCTTCTACGAGGACATCATCCACGATCACAAACAAACGCTGGGC
GGCGGAGGAATGCCAGCTGGCGGAGATTATGGTCACGAGAAGAGTGTTAA
TCTGCAGCCACGACCCGTGCACGAGGAACAGGAGGAGGCGGATCTTTCAG
ATCTATTTGGCGATGAGGATCTTGCCGACTTGGACATGGAAGGCGGCGAG
GGCGAGCGGTACTTGGGTCTGAAGAAGAGCGGCAAGTTCCCACACGGTCC
ACGGCAGCTGGAGGCCCAGAAACGTATGGGTGTACCGATGGCGGGACCCC
GCTCCCTGGAGCCACATGGTCATGGCGATGAGGATGTGCCACGACCCGTC
TACAGACCACAGGCGGAGGCGTTGAAGCAGCCACGCGAGGATCACATCGA
TTTGGACAAGGAGGAGGAAGAGGAGAAGGAGAAGGAAGAGAAAACGCAGC
AGGAGGATAAGCTGACAGGTGAAGGAGGTGCAGCAGCCAGCAATGATTCC
TCCAAGAGCCGTCGCCGTCGTTCGTTGGTCATTTCCGATCGCAAGGTGCG
CAGTGCCGATGTGGGCGTCAGCGGTCTGTACGATGTTATATCCGAGGCGG
ATTTGGCCTTCTCGCCGGACTCCAAACAGGAGGCGGTCACCGTGTTCCAG
GGCAAGATTAGCGAGGAGGTTGTCTACGGCATTTGTATGCCAGTGCCCGG
CTTCAGCATTCTCTTCATCGTTGTCATTTCGACAACGATCGTGTCCGCTC
TGGTGGCCGGATCCCTGCTATATCGCTATCAGCTGCAAAAGGAGGCGCTG
GAGAAGCAGACACCCATGCCGGTGACCGGAACACTGGCCTCCTGGATGAC
CCTGCGACTGTTTCGCCTGCGACACATGCAACAGCAGCAGCAGCAACAAC
AGCAGCAGCAGCAGCAGCAACAACAAGTGAGGCAGCCGAGTTCAGGTCAC
GAAACGGTCCAGGCAAGCTTTCTAGACCAT
BO17606.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
m-RA | 2049 | CG9369-PA | 1..2046 | 17..2062 | 10230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
m-RA | 3405 | CG9369-RA | 434..2481 | 15..2062 | 10240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11767168..11768584 | 646..2062 | 7085 | 100 | Plus |
X | 23542271 | X | 11766326..11766481 | 94..249 | 780 | 100 | Plus |
X | 23542271 | X | 11766750..11766900 | 376..526 | 755 | 100 | Plus |
X | 23542271 | X | 11766549..11766684 | 245..380 | 680 | 100 | Plus |
X | 23542271 | X | 11766978..11767102 | 524..648 | 625 | 100 | Plus |
X | 23542271 | X | 11763202..11763281 | 15..94 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:44:15 has no hits.
BO17606.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:20 Download gff for
BO17606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m-RA | 1..2049 | 17..2065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:49 Download gff for
BO17606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m-RA | 434..2481 | 15..2062 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:52 Download gff for
BO17606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m-RA | 436..2481 | 17..2064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:20 Download gff for
BO17606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m-RA | 434..2481 | 15..2062 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:26 Download gff for
BO17606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m-RA | 436..2481 | 17..2064 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:26 Download gff for
BO17606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11763204..11763281 | 17..94 | 100 | -> | Plus |
X | 11766327..11766480 | 95..248 | 100 | -> | Plus |
X | 11766553..11766680 | 249..376 | 100 | -> | Plus |
X | 11766751..11766898 | 377..524 | 100 | -> | Plus |
X | 11766979..11767101 | 525..647 | 100 | -> | Plus |
X | 11767170..11768584 | 648..2064 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:52 Download gff for
BO17606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11657237..11657314 | 17..94 | 100 | -> | Plus |
arm_X | 11660360..11660513 | 95..248 | 100 | -> | Plus |
arm_X | 11660586..11660713 | 249..376 | 100 | -> | Plus |
arm_X | 11660784..11660931 | 377..524 | 100 | -> | Plus |
arm_X | 11661012..11661134 | 525..647 | 100 | -> | Plus |
arm_X | 11661203..11662617 | 648..2064 | 99 | | Plus |
BO17606.pep Sequence
Translation from 16 to 2080
> BO17606.pep
MWSPQKGPTRLWDLRFSSCIFILHLMFSLVIAGNELWPMERPDGMPNIVS
LEVMCGKDHMDVHLTFSHPFEGIVSSKGQHSDPRCVYVPPSTGKTFFSFR
ISYSRCGTKPDLNGQFYENTVVVQYDKDLLEVWDEAKRLRCEWFNDYEKT
ASKPPMVIADLDVIQLDFRGDNVDCWMEIQHGKGPWAPPVSGIVPLGSTL
TLVVAINDYRGEFDMRVKSCVASDGSGHVINLSDEFGCVLRPKMISRFLK
ARAPDERATVITYAFFHAFKFPDALSVHIKCKVEICRHGCLDHCQNTGVG
GGGGGSGESLGLGLGLGLTNANERKDVHMSDALGSSSNDLLRDLALPPGG
QHGMGMGMGPDHDIFYEDIIHDHKQTLGGGGMPAGGDYGHEKSVNLQPRP
VHEEQEEADLSDLFGDEDLADLDMEGGEGERYLGLKKSGKFPHGPRQLEA
QKRMGVPMAGPRSLEPHGHGDEDVPRPVYRPQAEALKQPREDHIDLDKEE
EEEKEKEEKTQQEDKLTGEGGAAASNDSSKSRRRRSLVISDRKVRSADVG
VSGLYDVISEADLAFSPDSKQEAVTVFQGKISEEVVYGICMPVPGFSILF
IVVISTTIVSALVAGSLLYRYQLQKEALEKQTPMPVTGTLASWMTLRLFR
LRHMQQQQQQQQQQQQQQQQVRQPSSGHETVQASFLDH
BO17606.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
m-PA | 682 | CG9369-PA | 1..682 | 1..682 | 3628 | 100 | Plus |
dy-PA | 699 | CG9355-PA | 233..509 | 32..294 | 674 | 45.7 | Plus |
dyl-PC | 611 | CG15013-PC | 71..376 | 35..326 | 672 | 41.8 | Plus |
dyl-PA | 611 | CG15013-PA | 71..376 | 35..326 | 672 | 41.8 | Plus |
dyl-PB | 611 | CG15013-PB | 71..376 | 35..326 | 672 | 41.8 | Plus |