Clone BO17606 Report

Search the DGRC for BO17606

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:176
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptm-RA
Protein status:BO17606.pep: validated full length
Sequenced Size:2080

Clone Sequence Records

BO17606.3prime Sequence

753 bp (726 high quality bases) assembled on 2006-10-13

> BO17606.3prime
ATGGTCTAGAAAGCTTGCCTGGACCGTTTCGTGACCTGAACTCGGCTGCC
TCACTTGTTGTTGCTGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTGT
TGCATGTGTCGCAGGCGAAACAGTCGCAGGGTCATCCAGGAGGCCAGTGT
TCCGGTCACCGGCATGGGTGTCTGCTTCTCCAGCGCCTCCTTTTGCAGCT
GATAGCGATATAGCAGGGATCCGGCCACCAGAGCGGACACGATCGTTGTC
GAAATGACAACGATGAAGAGAATGCTGAAGCCGGGCACTGGCATACAAAT
GCCGTAGACAACCTCCTCGCTAATCTTGCCCTGGAACACGGTGACCGCCT
CCTGTTTGGAGTCCGGCGAGAAGGCCAAATCCGCCTCGGATATAACATCG
TACAGACCGCTGACGCCCACATCGGCACTGCGCACCTTGCGATCGGAAAT
GACCAACGAACGACGGCGACGGCTCTTGGAGGAATCATTGCTGGCTGCTG
CACCTCCTTCACCTGTCAGCTTATCCTCCTGCTGCGTTTTCTCTTCCTTC
TCCTTCTCCTCTTCCTCCTCCTTGTCCAAATCGATGTGATCCTCGCGTGG
CTGCTTCAACGCCTCCGCCTGTGGTCTGTAGACGGGTCGTGGCACATCCT
CATCGCCATGACCATGTGGCTCCAGGGAGCGGGGTCCCGCCATCGGTACA
CCCATACGTTTCTGGGCCTCCAGCTGCCGTGGACCGTGTGGGAACTTGCC
GCT

BO17606.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9369-PA 2049 m-RA 1312..2046 753..19 3675 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
m-RA 3405 CG9369-RA 1747..2481 753..19 3675 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11767850..11768584 753..19 3675 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:24:22 has no hits.

BO17606.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:41 Download gff for BO17606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9369-PA 1312..2049 16..753 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:19:21 Download gff for BO17606.3prime
Subject Subject Range Query Range Percent Splice Strand
m-RA 1747..2481 19..753 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:31:10 Download gff for BO17606.3prime
Subject Subject Range Query Range Percent Splice Strand
m-RA 1747..2481 19..753 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:31:10 Download gff for BO17606.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11767850..11768584 19..753 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:19:21 Download gff for BO17606.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11661883..11662617 19..753 100   Minus

BO17606.5prime Sequence

774 bp (717 high quality bases) assembled on 2006-10-13

> BO17606.5prime
GAAGTTATCAGTCGACATGTGGAGCCCACAAAAAGGCCCTACACGACTGT
GGGACCTTAGGTTTAGTAGCTGTATATTTATCTTACACTTAATGTTTAGT
TTAGTCATAGCTGGTAATGAACTGTGGCCCATGGAACGGCCAGACGGAAT
GCCCAATATCGTCTCACTGGAGGTGATGTGCGGCAAGGATCACATGGATG
TACATCTCACCTTTTCGCATCCATTCGAGGGCATCGTCAGCTCCAAAGGA
CAACACAGCGATCCGCGTTGCGTTTATGTGCCGCCCTCAACGGGCAAGAC
GTTCTTCTCCTTCCGCATCTCGTACTCCCGCTGCGGCACCAAGCCGGATC
TCAACGGACAGTTCTATGAGAATACGGTGGTGGTTCAGTACGACAAGGAT
CTGCTGGAAGTCTGGGATGAGGCTAAGCGATTGCGATGCGAGTGGTTCAA
TGACTACGAGAAGACCGCCTCCAAGCCACCGATGGTCATTGCCGATCTCG
ATGTTATCCAACTGGATTTCCGTGGTGACAATGTGGACTGCTGGATGGAG
ATTCAGCATGGCAAGGGACCCTGGGCGCCGCCTGTTAGTGGAATTGTACC
ACTCGGCTCAACTTTAACCCTGGTGGTGGCCATCAATGATTATCGAGGCG
AATTCGATATGCGTGTGAAATCCTGCGTGGCCTCCGATGGATCTGGTCAT
GTGATCAACCTGTCCGATGAATTTGGCTGCGTGCTGCGACCCAAGATGAT
CTCACGCTTCCTGAAGGCTCGTGC

BO17606.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9369-PA 2049 m-RA 1..758 17..774 3790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
m-RA 3405 CG9369-RA 434..1193 15..774 3800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11766326..11766481 94..249 780 100 Plus
X 23542271 X 11766750..11766900 376..526 755 100 Plus
X 23542271 X 11766549..11766684 245..380 680 100 Plus
X 23542271 X 11767168..11767296 646..774 645 100 Plus
X 23542271 X 11766978..11767102 524..648 625 100 Plus
X 23542271 X 11763202..11763281 15..94 400 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:34:34 has no hits.

BO17606.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:42 Download gff for BO17606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9369-PA 1..758 17..774 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:41:17 Download gff for BO17606.5prime
Subject Subject Range Query Range Percent Splice Strand
m-RA 434..1193 15..774 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:06 Download gff for BO17606.5prime
Subject Subject Range Query Range Percent Splice Strand
m-RA 434..1193 15..774 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:06 Download gff for BO17606.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11763202..11763281 15..94 100 -> Plus
X 11766327..11766480 95..248 100 -> Plus
X 11766553..11766680 249..376 100 -> Plus
X 11766751..11766898 377..524 100 -> Plus
X 11766979..11767101 525..647 100 -> Plus
X 11767170..11767296 648..774 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:41:17 Download gff for BO17606.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11661012..11661134 525..647 100 -> Plus
arm_X 11661203..11661329 648..774 100   Plus
arm_X 11660586..11660713 249..376 100 -> Plus
arm_X 11660784..11660931 377..524 100 -> Plus
arm_X 11657235..11657314 15..94 100 -> Plus
arm_X 11660360..11660513 95..248 100 -> Plus

BO17606.complete Sequence

2080 bp assembled on 2007-03-23

GenBank Submission: FJ634180

> BO17606.complete
GAAGTTATCAGTCGACATGTGGAGCCCACAAAAAGGCCCTACACGACTGT
GGGACCTTAGGTTTAGTAGCTGTATATTTATCTTACACTTAATGTTTAGT
TTAGTCATAGCTGGTAATGAACTGTGGCCCATGGAACGGCCAGACGGAAT
GCCCAATATCGTCTCACTGGAGGTGATGTGCGGCAAGGATCACATGGATG
TACATCTCACCTTTTCGCATCCATTCGAGGGCATCGTCAGCTCCAAAGGA
CAACACAGCGATCCGCGTTGCGTTTATGTGCCGCCCTCAACGGGCAAGAC
GTTCTTCTCCTTCCGCATCTCGTACTCCCGCTGCGGCACCAAGCCGGATC
TCAACGGACAGTTCTATGAGAATACGGTGGTGGTTCAGTACGACAAGGAT
CTGCTGGAAGTCTGGGATGAGGCTAAGCGATTGCGATGCGAGTGGTTCAA
TGACTACGAGAAGACCGCCTCCAAGCCACCGATGGTCATTGCCGATCTCG
ATGTTATCCAACTGGATTTCCGTGGTGACAATGTGGACTGCTGGATGGAG
ATTCAGCATGGCAAGGGACCCTGGGCGCCGCCTGTTAGTGGAATTGTACC
ACTCGGCTCAACTTTAACCCTGGTGGTGGCCATCAATGATTATCGAGGCG
AATTCGATATGCGTGTGAAATCCTGCGTGGCCTCCGATGGATCTGGTCAT
GTGATCAACCTGTCCGATGAATTTGGCTGCGTGCTGCGACCCAAGATGAT
CTCACGCTTCCTGAAGGCTCGTGCGCCCGACGAGAGGGCCACCGTGATCA
CCTATGCCTTCTTCCATGCCTTCAAGTTCCCGGATGCCCTCAGTGTGCAC
ATCAAGTGCAAGGTGGAGATTTGTCGCCACGGCTGTCTCGATCATTGCCA
GAACACGGGCGTGGGCGGTGGTGGCGGCGGATCCGGCGAGAGCCTGGGAT
TGGGTCTCGGCCTGGGACTGACCAATGCCAATGAGCGTAAGGATGTGCAC
ATGTCGGATGCCTTGGGCAGTAGCAGCAACGATCTGCTCAGGGATTTGGC
ACTGCCGCCGGGCGGTCAACACGGCATGGGCATGGGAATGGGTCCAGATC
ATGACATCTTCTACGAGGACATCATCCACGATCACAAACAAACGCTGGGC
GGCGGAGGAATGCCAGCTGGCGGAGATTATGGTCACGAGAAGAGTGTTAA
TCTGCAGCCACGACCCGTGCACGAGGAACAGGAGGAGGCGGATCTTTCAG
ATCTATTTGGCGATGAGGATCTTGCCGACTTGGACATGGAAGGCGGCGAG
GGCGAGCGGTACTTGGGTCTGAAGAAGAGCGGCAAGTTCCCACACGGTCC
ACGGCAGCTGGAGGCCCAGAAACGTATGGGTGTACCGATGGCGGGACCCC
GCTCCCTGGAGCCACATGGTCATGGCGATGAGGATGTGCCACGACCCGTC
TACAGACCACAGGCGGAGGCGTTGAAGCAGCCACGCGAGGATCACATCGA
TTTGGACAAGGAGGAGGAAGAGGAGAAGGAGAAGGAAGAGAAAACGCAGC
AGGAGGATAAGCTGACAGGTGAAGGAGGTGCAGCAGCCAGCAATGATTCC
TCCAAGAGCCGTCGCCGTCGTTCGTTGGTCATTTCCGATCGCAAGGTGCG
CAGTGCCGATGTGGGCGTCAGCGGTCTGTACGATGTTATATCCGAGGCGG
ATTTGGCCTTCTCGCCGGACTCCAAACAGGAGGCGGTCACCGTGTTCCAG
GGCAAGATTAGCGAGGAGGTTGTCTACGGCATTTGTATGCCAGTGCCCGG
CTTCAGCATTCTCTTCATCGTTGTCATTTCGACAACGATCGTGTCCGCTC
TGGTGGCCGGATCCCTGCTATATCGCTATCAGCTGCAAAAGGAGGCGCTG
GAGAAGCAGACACCCATGCCGGTGACCGGAACACTGGCCTCCTGGATGAC
CCTGCGACTGTTTCGCCTGCGACACATGCAACAGCAGCAGCAGCAACAAC
AGCAGCAGCAGCAGCAGCAACAACAAGTGAGGCAGCCGAGTTCAGGTCAC
GAAACGGTCCAGGCAAGCTTTCTAGACCAT

BO17606.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
m-RA 2049 CG9369-PA 1..2046 17..2062 10230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
m-RA 3405 CG9369-RA 434..2481 15..2062 10240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11767168..11768584 646..2062 7085 100 Plus
X 23542271 X 11766326..11766481 94..249 780 100 Plus
X 23542271 X 11766750..11766900 376..526 755 100 Plus
X 23542271 X 11766549..11766684 245..380 680 100 Plus
X 23542271 X 11766978..11767102 524..648 625 100 Plus
X 23542271 X 11763202..11763281 15..94 400 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:44:15 has no hits.

BO17606.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:20 Download gff for BO17606.complete
Subject Subject Range Query Range Percent Splice Strand
m-RA 1..2049 17..2065 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:49 Download gff for BO17606.complete
Subject Subject Range Query Range Percent Splice Strand
m-RA 434..2481 15..2062 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:52 Download gff for BO17606.complete
Subject Subject Range Query Range Percent Splice Strand
m-RA 436..2481 17..2064 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:20 Download gff for BO17606.complete
Subject Subject Range Query Range Percent Splice Strand
m-RA 434..2481 15..2062 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:26 Download gff for BO17606.complete
Subject Subject Range Query Range Percent Splice Strand
m-RA 436..2481 17..2064 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:26 Download gff for BO17606.complete
Subject Subject Range Query Range Percent Splice Strand
X 11763204..11763281 17..94 100 -> Plus
X 11766327..11766480 95..248 100 -> Plus
X 11766553..11766680 249..376 100 -> Plus
X 11766751..11766898 377..524 100 -> Plus
X 11766979..11767101 525..647 100 -> Plus
X 11767170..11768584 648..2064 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:52 Download gff for BO17606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11657237..11657314 17..94 100 -> Plus
arm_X 11660360..11660513 95..248 100 -> Plus
arm_X 11660586..11660713 249..376 100 -> Plus
arm_X 11660784..11660931 377..524 100 -> Plus
arm_X 11661012..11661134 525..647 100 -> Plus
arm_X 11661203..11662617 648..2064 99   Plus

BO17606.pep Sequence

Translation from 16 to 2080

> BO17606.pep
MWSPQKGPTRLWDLRFSSCIFILHLMFSLVIAGNELWPMERPDGMPNIVS
LEVMCGKDHMDVHLTFSHPFEGIVSSKGQHSDPRCVYVPPSTGKTFFSFR
ISYSRCGTKPDLNGQFYENTVVVQYDKDLLEVWDEAKRLRCEWFNDYEKT
ASKPPMVIADLDVIQLDFRGDNVDCWMEIQHGKGPWAPPVSGIVPLGSTL
TLVVAINDYRGEFDMRVKSCVASDGSGHVINLSDEFGCVLRPKMISRFLK
ARAPDERATVITYAFFHAFKFPDALSVHIKCKVEICRHGCLDHCQNTGVG
GGGGGSGESLGLGLGLGLTNANERKDVHMSDALGSSSNDLLRDLALPPGG
QHGMGMGMGPDHDIFYEDIIHDHKQTLGGGGMPAGGDYGHEKSVNLQPRP
VHEEQEEADLSDLFGDEDLADLDMEGGEGERYLGLKKSGKFPHGPRQLEA
QKRMGVPMAGPRSLEPHGHGDEDVPRPVYRPQAEALKQPREDHIDLDKEE
EEEKEKEEKTQQEDKLTGEGGAAASNDSSKSRRRRSLVISDRKVRSADVG
VSGLYDVISEADLAFSPDSKQEAVTVFQGKISEEVVYGICMPVPGFSILF
IVVISTTIVSALVAGSLLYRYQLQKEALEKQTPMPVTGTLASWMTLRLFR
LRHMQQQQQQQQQQQQQQQQVRQPSSGHETVQASFLDH

BO17606.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
m-PA 682 CG9369-PA 1..682 1..682 3628 100 Plus
dy-PA 699 CG9355-PA 233..509 32..294 674 45.7 Plus
dyl-PC 611 CG15013-PC 71..376 35..326 672 41.8 Plus
dyl-PA 611 CG15013-PA 71..376 35..326 672 41.8 Plus
dyl-PB 611 CG15013-PB 71..376 35..326 672 41.8 Plus