Clone Sequence Records
BO17607.complete Sequence
3085 bp assembled on 2010-04-13
GenBank Submission: KX797262
> BO17607.complete
GAAGTTATCAGTCGACATGCATAGAGCCCACACAGCCTTCAGCCTGGCCT
TGTCGCCGATGGCGCACAAGAACTTCGCCACATGGCTGCTCAAGAGCAGC
AGCAGTCAGCAGATGGCCAAGGTAACTGCAGCGGCCGCTGTGCGCACCTA
CAACTCCGCAGCTGCCGAACCTTTTGCCAACGGCAGCACCGCCTCCTACG
TGGAGGAGATGTACAACGCCTGGCTTCGGGATCCCACTTCCGTGCACACC
TCCTGGGACGCGTACTTCCGCAGCAACAGCTACGTTAGCCCGCCCAACTT
GGCGCCCGTGCAGGCCAACACTCTGCCGCTGACCGCCTTCAACTTTGGAG
GAGCCGTCGCCGGCGCTGCGCCCGACTCCAAGACCATTGACGACCATCTG
GCCGTCCAGGCCATCATCAGGAGCTACCAGTCACGAGGTCATTTGGCATC
TGATCTGGATCCGCTTGGAATTTTGACTCGCGAAAAAACCGTCTGCAAGG
ATGGGCTAGCACGTCGTGCTAACGAAGATGTGCTCAGGCAGCACTCTGGG
TTTTTGTTTGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCAC
TACCTTCATCGGAGGCGATGAGGCTTCGTTGCCCCTAAAGGAAATCCTGA
ACCGCCTGGAGAATGTCTACTGTAATAAGATTGGCGTGGAGTTCATGTTC
ATCAACTCTCTGGAGCAATGCAACTGGATCCGCAAGCGTTTTGAGACCCC
CGGCGTCCTTAACTTCTCGCCCGAGGAGAAGCGTCTGATCCTGGCCCGTT
TGACCCGTGCCACCGGCTTTGAGGCTTTCCTGGCCAAGAAGTACTCTTCT
GAGAAACGTTTCGGTCTGGAGGGTTGCGAGATCATGATCCCAGCCCTGAA
GGAGATCATCGACGTATCAACGGAGTTGGGAGTGGAGTCGGTCATCATGG
GCATGCCCCATCGTGGACGTCTTAACACCTTGGCCAATGTATGCCGCAAG
CCCTTGAACCAGATCTTCACCCAGTTCGCTGGACTGGAGGCTGCTGATGA
TGGCTCTGGTGATGTCAAGTACCATCTCGGTACATACATCGAGCGATTGA
ACCGCGTTACAAACAAGAACATCCGCCTGGCTGTCGTGGCCAACCCGTCC
CATCTGGAGGCTGTGGATCCCGTGGTGCAGGGCAAGACCCGTGCCGAGCA
GTTCTACCGTGGCGACCAGGAGGGCAAGAAGGTTATGTCCATTTTGATCC
ACGGTGATGCCGCCTTCTGCGGACAGGGCGTCGTCTATGAAACTATGCAT
CTTTCGGACCTGCCCGACTACACCACCCACGGAACTATCCATGTGGTGGC
CAACAACCAGATCGGTTTCACCACCGATCCCCGTTTCTCGAGGTCCTCTC
CCTACTGTACGGATGTGGCTCGTGTCGTCAATGCTCCTATTTTCCACGTC
AACGCTGACGATCCAGAGGCCGTGATGCATGTGTGCAAGGTGGCTGCTGA
GTGGCGTGCTACTTTCCACAAGGATTGTGTTATTGATTTGGTCGGATACC
GCCGCAATGGACACAACGAGATCGACGAGCCCATGTTCACGCAACCCTTG
ATGTACCAGAAGATCCGCAAGCACAAGAACTGTCTCGACCTGTATGCCGA
CAAACTGATCGCCGAGGGCACTGTCACCGCCGAGGAGGTTAAGTCGGTTG
CCGCTAAATACGAGAACATTTGCGAGGAGGCATTCGCTCTGGCCAAGACC
GAGACCCACGTCAAGTACAAGGACTGGCTCGACTCGCCCTGGTCCGGCTT
TTTCGAGGGCAAAGACCCATTGAAGGTAGCGCCCACTGGAGTGAAGGAGG
AGACCCTCATCCACATCGGCAACCGCTTCTCGTCGCCACCACCGAACGCT
GCTGAATTCGTGATTCACAAGGGTCTATTGCGAGTGTTGGCCGCTCGCAA
GGCAATGGTGGACGAAAAGGTCGCTGATTGGGCTTTGGGAGAGGCCATGG
CCTTCGGCTCTCTGCTGAAGGAGGGAATCCATGTGCGCCTTTCGGGACAG
GATGTCGAGCGTGGTACCTTCTCGCATCGCCACCATGTGCTGCACCACCA
GCTGGTCGACAAGGCCACTTACAACTCGCTGCAGCACATGTACCCAGATC
AGGCGCCCTACTCCGTCTCCAACAGCTCGCTGTCGGAGTACGCAGTGCTT
GGTTTCGAGCACGGTTACTCGATGACCAATCCCAATGCCCTGGTGCTGTG
GGAGGCTCAGTTCGGAGACTTCAGCAACACGGCCCAGTCGATCATCGATC
AGTTCATCTCCAGCGGTCAGTCAAAGTGGGTGCGCCAATCGGGTCTGGTA
ATGCTCCTGCCCCACGGCATGGAAGGCATGGGCCCCGAGCACTCCTCGTG
CCGCGTGGAGCGCTTCCTGCAAATGAGCAGTGACGATCCCGACTACTTCC
CACCAGAGTCCGATGAGTTCGGAGTGCGACAGCTGCACGACATTAACTGG
ATCGTGGCAAACTGCTCGACGCCCGCCAACTACTACCACATCCTGCGCCG
ACAGATCGCATTGCCTTTCCGCAAGCCCCTGATTCTGTGCACGCCCAAAT
CGCTGCTGCGTCACCCCGAGGCTAAGAGTCCTTTCAGCGAGATGAGCGAG
GGCAGCGAGTTCCAGCGCATCATCCCCGACAACGGTCCCGCCGGCCAGAA
TCCCAGCAATGTGAAGAAGGTCGTCTTCTGCTCGGGCCGCGTCTACTACG
ATTTGACCAAGACACGTAGGGAAAAGCAGCTGGAGGGCGAAATCGCCATT
GTGCGCGTGGAGCAGATCTCTCCCTTCCCCTTCGATCTGGTCAAGGAGCA
GGCCAACCTGTACAAGAATGCCGAACTCGTGTGGGCCCAAGAGGAGCACA
AGAACCAGGGCAGCTGGACCTATGTGCAACCTCGTTTCCTCACCGCCTTG
AACCACAGCCGCGACGTCAGCTACGTCGGACGCGCCTGCGGAGCCTCCAC
CGCCACCGGATCCAAGGCCCAGCACATCCGTGAGCTGAATGCGCTGCTCA
ACGACGCGATTTCGACCGCAAGCTTTCTAGACCAT
BO17607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:43:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nc73EF-RF | 3054 | CG11661-PF | 1..3051 | 17..3067 | 15255 | 100 | Plus |
| Nc73EF-RH | 3054 | CG11661-PH | 1..3051 | 17..3067 | 15255 | 100 | Plus |
| Nc73EF-RA | 3027 | CG11661-PA | 514..3024 | 557..3067 | 12555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nc73EF-RF | 3718 | CG11661-RF | 66..3116 | 17..3067 | 15255 | 100 | Plus |
| Nc73EF-RH | 3742 | CG11661-RH | 90..3140 | 17..3067 | 15255 | 100 | Plus |
| Nc73EF-RA | 4381 | CG11661-RA | 625..3135 | 557..3067 | 12555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:43:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16963870..16964764 | 1921..2815 | 4475 | 100 | Plus |
| 3L | 28110227 | 3L | 16962943..16963812 | 1052..1921 | 4350 | 100 | Plus |
| 3L | 28110227 | 3L | 16962476..16962888 | 640..1052 | 2065 | 100 | Plus |
| 3L | 28110227 | 3L | 1607204..1607692 | 1955..2443 | 915 | 79.1 | Plus |
| 3L | 28110227 | 3L | 16959705..16959884 | 251..430 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 16964821..16964978 | 2813..2970 | 790 | 100 | Plus |
| 3L | 28110227 | 3L | 16959281..16959422 | 109..250 | 710 | 100 | Plus |
| 3L | 28110227 | 3L | 16960536..16960668 | 429..561 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 16967379..16967478 | 2968..3067 | 500 | 100 | Plus |
| 3L | 28110227 | 3L | 16959121..16959216 | 17..112 | 480 | 100 | Plus |
| 3L | 28110227 | 3L | 16962334..16962414 | 560..640 | 405 | 100 | Plus |
| 3L | 28110227 | 3L | 1606366..1606605 | 1231..1470 | 390 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:43:54 has no hits.
BO17607.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:23:41 Download gff for
BO17607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RF | 61..3111 | 17..3069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:28 Download gff for
BO17607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RH | 87..3137 | 17..3069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:37 Download gff for
BO17607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RH | 90..3140 | 17..3069 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:37 Download gff for
BO17607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16962335..16962413 | 561..639 | 100 | -> | Plus |
| 3L | 16959705..16959884 | 251..430 | 100 | -> | Plus |
| 3L | 16960538..16960667 | 431..560 | 100 | -> | Plus |
| 3L | 16959121..16959216 | 17..112 | 100 | -> | Plus |
| 3L | 16959285..16959422 | 113..250 | 100 | -> | Plus |
| 3L | 16962476..16962887 | 640..1051 | 100 | -> | Plus |
| 3L | 16962943..16963811 | 1052..1920 | 100 | -> | Plus |
| 3L | 16963870..16964764 | 1921..2815 | 100 | -> | Plus |
| 3L | 16964824..16964978 | 2816..2970 | 100 | -> | Plus |
| 3L | 16967382..16967478 | 2971..3069 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:28 Download gff for
BO17607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16952221..16952316 | 17..112 | 100 | -> | Plus |
| arm_3L | 16952385..16952522 | 113..250 | 100 | -> | Plus |
| arm_3L | 16952805..16952984 | 251..430 | 100 | -> | Plus |
| arm_3L | 16953638..16953767 | 431..560 | 100 | -> | Plus |
| arm_3L | 16955435..16955513 | 561..639 | 100 | -> | Plus |
| arm_3L | 16955576..16955987 | 640..1051 | 100 | -> | Plus |
| arm_3L | 16956043..16956911 | 1052..1920 | 100 | -> | Plus |
| arm_3L | 16956970..16957864 | 1921..2815 | 100 | -> | Plus |
| arm_3L | 16957924..16958078 | 2816..2970 | 100 | -> | Plus |
| arm_3L | 16960482..16960578 | 2971..3069 | 97 | | Plus |
BO17607.3prime Sequence
810 bp (720 high quality bases) assembled on 2006-10-13
> BO17607.3prime
ATGGTCTAGAAAGCTTGCGGTCGAAATCGCGTCGTTGAGCAGCGCATTCA
GCTCACGGATGTGCTGGGCCTTGGATCCGGTGGCGGTGGAGGCTCCGCAG
GCGCGTCCGACGTAGCTGACGTCGCGGCTGTGGTTCAAGGCGGTGAGGAA
ACGAGGTTGCACATAGGTCCAGCTGCCCTGGTTCTTGTGCTCCTCTTGGG
CCCACACGAGTTCGGCATTCTTGTACAGGTTGGCCTGCTCCTTGACCAGA
TCGAAGGGGAAGGGAGAGATCTGCTCCACGCGCACAATGGCGATTTCGCC
CTCCAGCTGCTTTTCCCTACGTGTCTTGGTCAAATCGTAGTAGACGCGGC
CCGAGCAGAAGACGACCTTCTTCACATTGCTGGGATTCTGGCCGGCGGGA
CCGTTGTCGGGGATGATGCGCTGGAACTCGCTGCCCTCGCTCATCTCGCT
GAAAGGACTCTTAGCCTCGGGGTGACGCAGCAGCGATTTGGGCGTGCACA
GAATCAGGGGCTTGCGGAAAGGCAATGCGATCTGTCGGCGCAGGATGTGG
TAGTAGTTGGCGGGCGTCGAGCAGTTTGCCACGATCCAGTTAATGTCGTG
CAGCTGTCGCACTCCGAACTCATCGGACTCTGGTGGGAAGTAGTCGGGAT
CGTCACTGCTCATTTGCAGGAAGCGCTCCACGCGGCACGAGGAGTGCTCG
GGGCCCATGCCTTCCATGCCGTGGGGCAGGAGCATTACCAGACCCGATTG
GCGCACCCACTTTGACTGACCGCTGGAGATGAACTGATTCGATGATCGAC
TGGGCCGTGT
BO17607.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:55:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11661-PG | 3027 | Nc73EF-RG | 2234..3024 | 810..19 | 3920 | 99.8 | Minus |
| CG11661-PH | 3027 | Nc73EF-RH | 2234..3024 | 810..19 | 3920 | 99.8 | Minus |
| CG11661-PC | 3027 | Nc73EF-RC | 2234..3024 | 810..19 | 3920 | 99.8 | Minus |
| CG11661-PB | 3027 | Nc73EF-RB | 2234..3024 | 810..19 | 3920 | 99.8 | Minus |
| CG11661-PE | 2337 | Nc73EF-RE | 1544..2334 | 810..19 | 3920 | 99.8 | Minus |
| CG11661-PA | 3027 | Nc73EF-RA | 2234..3024 | 810..19 | 3920 | 99.8 | Minus |
| CG11661-PF | 3054 | Nc73EF-RF | 2261..3051 | 810..19 | 3920 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nc73EF-RF | 3718 | CG11661-RF | 2326..3116 | 810..19 | 3935 | 99.9 | Minus |
| Nc73EF-RA | 4381 | CG11661-RA | 2345..3135 | 810..19 | 3935 | 99.9 | Minus |
| Nc73EF-RB | 3698 | CG11661-RB | 2306..3096 | 810..19 | 3935 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16964226..16964764 | 810..271 | 2650 | 99.8 | Minus |
| 3L | 28110227 | 3L | 16964821..16964978 | 273..116 | 790 | 100 | Minus |
| 3L | 28110227 | 3L | 16967379..16967478 | 118..19 | 500 | 100 | Minus |
| 3L | 28110227 | 3L | 1607526..1607692 | 810..643 | 280 | 79.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:54:50 has no hits.
BO17607.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:43 Download gff for
BO17607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11661-PF | 2261..3054 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:49:37 Download gff for
BO17607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RB | 2306..3100 | 14..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:17 Download gff for
BO17607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RB | 2306..3100 | 14..810 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:17 Download gff for
BO17607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16964226..16964764 | 271..810 | 99 | -> | Minus |
| 3L | 16964824..16964978 | 116..270 | 100 | -> | Minus |
| 3L | 16967382..16967482 | 14..115 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:49:37 Download gff for
BO17607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16957326..16957864 | 271..810 | 99 | -> | Minus |
| arm_3L | 16957924..16958078 | 116..270 | 100 | -> | Minus |
| arm_3L | 16960482..16960582 | 14..115 | 98 | | Minus |
BO17607.5prime Sequence
791 bp (756 high quality bases) assembled on 2006-10-13
> BO17607.5prime
GAAGTTATCAGTCGACATGCATAGAGCCCACACAGCCTTCAGCCTGGCCT
TGTCGCCGATGGCGCACAAGAACTTCGCCACATGGCTGCTCAAGAGCAGC
AGCAGTCAGCAGATGGCCAAGGTAACTGCAGCGGCCGCTGTGCGCACCTA
CAACTCCGCAGCTGCCGAACCTTTTGCCAACGGCAGCACCGCCTCCTACG
TGGAGGAGATGTACAACGCCTGGCTTCGGGATCCCACTTCCGTGCACACC
TCCTGGGACGCGTACTTCCGCAGCAACAGCTACGTTAGCCCGCCCAACTT
GGCGCCCGTGCAGGCCAACACTCTGCCGCTGACCGCCTTCAACTTTGGAG
GAGCCGTCGCCGGCGCTGCGCCCGACTCCAAGACCATTGACGACCATCTG
GCCGTCCAGGCCATCATCAGGAGCTACCAGTCACGAGGTCATTTGGCATC
TGATCTGGATCCGCTTGGAATTTTGACTCGCGAAAAAACCGTCTGCAAGG
ATGGGCTAGCACGTCGTGCTAACGAAGATGTGCTCAGGCAGCACTCTGGG
TTTTTGTTTGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCAC
TACCTTCATCGGAGGCGATGAGGCTTCGTTGCCCCTAAAGGAAATCCTGA
ACCGCCTGGAGAATGTCTACTGTAATAAGATTGGCGTGGAGTTCATGTTC
ATCAACTCTCTGGAGCAATGCAACTGGATCCGCAAGCGTTTTGAGACCCC
CGGCGTCCTTACTTCTCGCCCGAGGAGAAGCGTCTGATCCT
BO17607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11661-PF | 3054 | Nc73EF-RF | 1..776 | 17..791 | 3840 | 99.8 | Plus |
| CG11661-PG | 3027 | Nc73EF-RG | 1..414 | 17..430 | 2070 | 100 | Plus |
| CG11661-PH | 3027 | Nc73EF-RH | 1..414 | 17..430 | 2070 | 100 | Plus |
| CG11661-PC | 3027 | Nc73EF-RC | 1..414 | 17..430 | 2070 | 100 | Plus |
| CG11661-PB | 3027 | Nc73EF-RB | 1..414 | 17..430 | 2070 | 100 | Plus |
| CG11661-PA | 3027 | Nc73EF-RA | 1..414 | 17..430 | 2070 | 100 | Plus |
| CG11661-PE | 2337 | Nc73EF-RE | 1..267 | 17..283 | 1335 | 100 | Plus |
| CG11661-PG | 3027 | Nc73EF-RG | 514..749 | 557..791 | 1140 | 99.5 | Plus |
| CG11661-PH | 3027 | Nc73EF-RH | 514..749 | 557..791 | 1140 | 99.5 | Plus |
| CG11661-PC | 3027 | Nc73EF-RC | 514..749 | 557..791 | 1140 | 99.5 | Plus |
| CG11661-PB | 3027 | Nc73EF-RB | 514..749 | 557..791 | 1140 | 99.5 | Plus |
| CG11661-PA | 3027 | Nc73EF-RA | 514..749 | 557..791 | 1140 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nc73EF-RF | 3718 | CG11661-RF | 66..841 | 17..791 | 3855 | 99.9 | Plus |
| Nc73EF-RH | 3742 | CG11661-RH | 90..865 | 17..791 | 3855 | 99.9 | Plus |
| Nc73EF-RJ | 4376 | CG11661-RJ | 460..873 | 17..430 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:04:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16959705..16959884 | 251..430 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 16962476..16962628 | 640..791 | 715 | 99.3 | Plus |
| 3L | 28110227 | 3L | 16959281..16959422 | 109..250 | 710 | 100 | Plus |
| 3L | 28110227 | 3L | 16960536..16960668 | 429..561 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 16959121..16959216 | 17..112 | 480 | 100 | Plus |
| 3L | 28110227 | 3L | 16962334..16962414 | 560..640 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:04:47 has no hits.
BO17607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:44 Download gff for
BO17607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11661-PF | 1..776 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:31:35 Download gff for
BO17607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RH | 87..862 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:51 Download gff for
BO17607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RH | 90..865 | 17..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:51 Download gff for
BO17607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16959121..16959216 | 17..112 | 100 | -> | Plus |
| 3L | 16959285..16959422 | 113..250 | 100 | -> | Plus |
| 3L | 16959705..16959884 | 251..430 | 100 | -> | Plus |
| 3L | 16960538..16960667 | 431..560 | 100 | -> | Plus |
| 3L | 16962335..16962413 | 561..639 | 100 | -> | Plus |
| 3L | 16962476..16962628 | 640..791 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:31:35 Download gff for
BO17607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16955576..16955728 | 640..791 | 99 | | Plus |
| arm_3L | 16952221..16952316 | 17..112 | 100 | -> | Plus |
| arm_3L | 16952385..16952522 | 113..250 | 100 | -> | Plus |
| arm_3L | 16952805..16952984 | 251..430 | 100 | -> | Plus |
| arm_3L | 16953638..16953767 | 431..560 | 100 | -> | Plus |
| arm_3L | 16955435..16955513 | 561..639 | 100 | -> | Plus |
BO17607.pep Sequence
Translation from 16 to 3085
> BO17607.pep
MHRAHTAFSLALSPMAHKNFATWLLKSSSSQQMAKVTAAAAVRTYNSAAA
EPFANGSTASYVEEMYNAWLRDPTSVHTSWDAYFRSNSYVSPPNLAPVQA
NTLPLTAFNFGGAVAGAAPDSKTIDDHLAVQAIIRSYQSRGHLASDLDPL
GILTREKTVCKDGLARRANEDVLRQHSGFLFGEQDMDRQFKLPSTTFIGG
DEASLPLKEILNRLENVYCNKIGVEFMFINSLEQCNWIRKRFETPGVLNF
SPEEKRLILARLTRATGFEAFLAKKYSSEKRFGLEGCEIMIPALKEIIDV
STELGVESVIMGMPHRGRLNTLANVCRKPLNQIFTQFAGLEAADDGSGDV
KYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGD
QEGKKVMSILIHGDAAFCGQGVVYETMHLSDLPDYTTHGTIHVVANNQIG
FTTDPRFSRSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRATF
HKDCVIDLVGYRRNGHNEIDEPMFTQPLMYQKIRKHKNCLDLYADKLIAE
GTVTAEEVKSVAAKYENICEEAFALAKTETHVKYKDWLDSPWSGFFEGKD
PLKVAPTGVKEETLIHIGNRFSSPPPNAAEFVIHKGLLRVLAARKAMVDE
KVADWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQLVDKA
TYNSLQHMYPDQAPYSVSNSSLSEYAVLGFEHGYSMTNPNALVLWEAQFG
DFSNTAQSIIDQFISSGQSKWVRQSGLVMLLPHGMEGMGPEHSSCRVERF
LQMSSDDPDYFPPESDEFGVRQLHDINWIVANCSTPANYYHILRRQIALP
FRKPLILCTPKSLLRHPEAKSPFSEMSEGSEFQRIIPDNGPAGQNPSNVK
KVVFCSGRVYYDLTKTRREKQLEGEIAIVRVEQISPFPFDLVKEQANLYK
NAELVWAQEEHKNQGSWTYVQPRFLTALNHSRDVSYVGRACGASTATGSK
AQHIRELNALLNDAISTASFLDH
BO17607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nc73EF-PF | 1017 | CG11661-PF | 1..1017 | 1..1017 | 5344 | 100 | Plus |
| Nc73EF-PH | 1017 | CG11661-PH | 1..1017 | 1..1017 | 5344 | 100 | Plus |
| Nc73EF-PA | 1008 | CG11661-PA | 1..1008 | 1..1017 | 5153 | 97.1 | Plus |
| Nc73EF-PB | 1008 | CG11661-PB | 1..1008 | 1..1017 | 5153 | 97.1 | Plus |
| Nc73EF-PC | 1008 | CG11661-PC | 1..1008 | 1..1017 | 5153 | 97.1 | Plus |
