Clone BO17609 Report

Search the DGRC for BO17609

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:176
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG30419-RA
Protein status:BO17609.pep: validated full length
Sequenced Size:925

Clone Sequence Records

BO17609.5prime Sequence

771 bp (716 high quality bases) assembled on 2006-10-13

> BO17609.5prime
GAAGTTATCAGTCGACATGGAAATGGACGTCAATCGCCCGACCGGCCGCC
ATGGCAACCTAATGACCATATCCGCCCGCTGCTCCAACAACAATGCAGCC
GAAGCCGGAGCCGGAGTTGGAGCCACCAGGACTCCGGCCGCCGGAAGTGA
GGCGCCGCCCAGCGGCTGCTGCGGCATCTTGGGCCGCCTCCTCTGCGTGA
GTCGCCACAAGGCCACGCAATCGGTGGCGGGCAGCGATCCCTTCTCCCAG
CTGCAGTTGCAGCGCAAGGGAGTCGCCACACCTGCTGCCGTTTCCGGACA
GCGACGCCGCCGGACGCCGCAGGAAATCTACTTCGAGAGTCGCGGCAAGT
CCTGCAAGAAGCTGCTTAAATTCAATGGCAATTCCAACAAGATACTGCTG
TATCCCGAGGAGGGCTGGGCGAGGACCGCCTCATCCAGTTACTGGACCAT
CACGCCCTGCTTCTGGCAGCCCAATCGCTGCCGCATCGTCGAGTGCTCCG
GAACCCAACGGCGCGCGACGAAAGCCCGGATGCTGCCGCTGGAGCAGCAG
GGATCCCTCCTGATTGCCGGACACTTTCGCCGGACGACGGCGGGGGGCGG
AGGAGCTGCATCGCCAGCGGGGGGCGGGGCATCGGGCAACGGTTCGGTGG
CTGCCACGCCCACGCCCGCAATACCTGCCGATGCAATCCGGACGGGGTCA
ACGGGCTGTGACAAGTCGCAGCCCGCGTGGAACGACGAGTTCAAGCTGTA
TCTGACGTCGAACATCTCGAT

BO17609.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG30419-PA 894 CG30419-RA 1..755 17..771 3775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG30419-RA 3812 CG30419-RA 341..1097 15..771 3785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24215206..24215587 771..390 1910 100 Minus
2R 25286936 2R 24229079..24229455 391..15 1885 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:34:46 has no hits.

BO17609.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:44 Download gff for BO17609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30419-PA 1..755 17..771 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:41:21 Download gff for BO17609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30419-RA 336..1097 10..771 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:07 Download gff for BO17609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30419-RA 336..1097 10..771 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:07 Download gff for BO17609.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24215206..24215585 392..771 100 <- Minus
2R 24229079..24229460 10..391 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:41:21 Download gff for BO17609.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20102729..20103108 392..771 100 <- Minus
arm_2R 20116602..20116983 10..391 99   Minus

BO17609.complete Sequence

925 bp assembled on 2007-03-23

GenBank Submission: FJ634181

> BO17609.complete
GAAGTTATCAGTCGACATGGAAATGGACGTCAATCGCCCGACCGGCCGCC
ATGGCAACCTAATGACCATATCCGCCCGCTGCTCCAACAACAATGCAGCC
GAAGCCGGAGCCGGAGTTGGAGCCACCAGGACTCCGGCCGCCGGAAGTGA
GGCGCCGCCCAGCGGCTGCTGCGGCATCTTGGGCCGCCTCCTCTGCGTGA
GTCGCCACAAGGCCACGCAATCGGTGGCGGGCAGCGATCCCTTCTCCCAG
CTGCAGTTGCAGCGCAAGGGAGTCGCCACACCTGCTGCCGTTTCCGGACA
GCGACGCCGCCGGACGCCGCAGGAAATCTACTTCGAGAGTCGCGGCAAGT
CCTGCAAGAAGCTGCTTAAATTCAATGGCAATTCCAACAAGATACTGCTG
TATCCCGAGGAGGGCTGGGCGAGGACCGCCTCATCCAGTTACTGGACCAT
CACGCCCTGCTTCTGGCAGCCCAATCGCTGCCGCATCGTCGAGTGCTCCG
GAACCCAACGGCGCGCGACGAAAGCCCGGATGCTGCCGCTGGAGCAGCAG
GGATCCCTCCTGATTGCCGGACACTTTCGCCGGACGACGGCGGGGGGCGG
AGGAGCTGCATCGCCAGCGGGGGGCGGGGCATCGGGCAACGGTTCGGTGG
CTGCCACGCCCACGCCCGCAATACCTGCCGATGCAATCCGGACGGGGTCA
ACGGGCTGTGACAAGTCGCAGCCCGCGTGGAACGACGAGTTCAAGCTGTA
TCTGACGTCGAACATCTCGATGGAGGACTACAACATGGGCTACTGCCTCA
CCGGATTCGTGGAGCGCCGCTGCCAGGTGACCAACACCTTCCAGATGACT
CACTTTGCGGTCATCAAGCGCCAGTGGCCACCGTCGCCGTCCAACCTGGG
CAACTCCGCAAGCTTTCTAGACCAT

BO17609.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG30419-RA 894 CG30419-PA 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG30419-RA 3812 CG30419-RA 341..1233 15..907 4465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24215070..24215587 907..390 2590 100 Minus
2R 25286936 2R 24229079..24229455 391..15 1885 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:09:06 has no hits.

BO17609.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:22 Download gff for BO17609.complete
Subject Subject Range Query Range Percent Splice Strand
CG30419-RA 1..894 17..911 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:22 Download gff for BO17609.complete
Subject Subject Range Query Range Percent Splice Strand
CG30419-RA 339..1229 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:12 Download gff for BO17609.complete
Subject Subject Range Query Range Percent Splice Strand
CG30419-RA 343..1233 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:22 Download gff for BO17609.complete
Subject Subject Range Query Range Percent Splice Strand
CG30419-RA 332..1232 10..911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:59 Download gff for BO17609.complete
Subject Subject Range Query Range Percent Splice Strand
CG30419-RA 343..1233 17..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:59 Download gff for BO17609.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24215068..24215585 392..909 99 <- Minus
2R 24229079..24229453 17..391 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:12 Download gff for BO17609.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20102591..20103108 392..909 99 <- Minus
arm_2R 20116602..20116976 17..391 100   Minus

BO17609.pep Sequence

Translation from 16 to 925

> BO17609.pep
MEMDVNRPTGRHGNLMTISARCSNNNAAEAGAGVGATRTPAAGSEAPPSG
CCGILGRLLCVSRHKATQSVAGSDPFSQLQLQRKGVATPAAVSGQRRRRT
PQEIYFESRGKSCKKLLKFNGNSNKILLYPEEGWARTASSSYWTITPCFW
QPNRCRIVECSGTQRRATKARMLPLEQQGSLLIAGHFRRTTAGGGGAASP
AGGGASGNGSVAATPTPAIPADAIRTGSTGCDKSQPAWNDEFKLYLTSNI
SMEDYNMGYCLTGFVERRCQVTNTFQMTHFAVIKRQWPPSPSNLGNSASF
LDH

BO17609.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG30419-PA 297 CG30419-PA 1..297 1..297 1586 100 Plus