Clone Sequence Records
BO17609.5prime Sequence
771 bp (716 high quality bases) assembled on 2006-10-13
> BO17609.5prime
GAAGTTATCAGTCGACATGGAAATGGACGTCAATCGCCCGACCGGCCGCC
ATGGCAACCTAATGACCATATCCGCCCGCTGCTCCAACAACAATGCAGCC
GAAGCCGGAGCCGGAGTTGGAGCCACCAGGACTCCGGCCGCCGGAAGTGA
GGCGCCGCCCAGCGGCTGCTGCGGCATCTTGGGCCGCCTCCTCTGCGTGA
GTCGCCACAAGGCCACGCAATCGGTGGCGGGCAGCGATCCCTTCTCCCAG
CTGCAGTTGCAGCGCAAGGGAGTCGCCACACCTGCTGCCGTTTCCGGACA
GCGACGCCGCCGGACGCCGCAGGAAATCTACTTCGAGAGTCGCGGCAAGT
CCTGCAAGAAGCTGCTTAAATTCAATGGCAATTCCAACAAGATACTGCTG
TATCCCGAGGAGGGCTGGGCGAGGACCGCCTCATCCAGTTACTGGACCAT
CACGCCCTGCTTCTGGCAGCCCAATCGCTGCCGCATCGTCGAGTGCTCCG
GAACCCAACGGCGCGCGACGAAAGCCCGGATGCTGCCGCTGGAGCAGCAG
GGATCCCTCCTGATTGCCGGACACTTTCGCCGGACGACGGCGGGGGGCGG
AGGAGCTGCATCGCCAGCGGGGGGCGGGGCATCGGGCAACGGTTCGGTGG
CTGCCACGCCCACGCCCGCAATACCTGCCGATGCAATCCGGACGGGGTCA
ACGGGCTGTGACAAGTCGCAGCCCGCGTGGAACGACGAGTTCAAGCTGTA
TCTGACGTCGAACATCTCGAT
BO17609.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30419-PA | 894 | CG30419-RA | 1..755 | 17..771 | 3775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30419-RA | 3812 | CG30419-RA | 341..1097 | 15..771 | 3785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24215206..24215587 | 771..390 | 1910 | 100 | Minus |
2R | 25286936 | 2R | 24229079..24229455 | 391..15 | 1885 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:34:46 has no hits.
BO17609.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:44 Download gff for
BO17609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30419-PA | 1..755 | 17..771 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:41:21 Download gff for
BO17609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30419-RA | 336..1097 | 10..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:07 Download gff for
BO17609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30419-RA | 336..1097 | 10..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:07 Download gff for
BO17609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24215206..24215585 | 392..771 | 100 | <- | Minus |
2R | 24229079..24229460 | 10..391 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:41:21 Download gff for
BO17609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20102729..20103108 | 392..771 | 100 | <- | Minus |
arm_2R | 20116602..20116983 | 10..391 | 99 | | Minus |
BO17609.complete Sequence
925 bp assembled on 2007-03-23
GenBank Submission: FJ634181
> BO17609.complete
GAAGTTATCAGTCGACATGGAAATGGACGTCAATCGCCCGACCGGCCGCC
ATGGCAACCTAATGACCATATCCGCCCGCTGCTCCAACAACAATGCAGCC
GAAGCCGGAGCCGGAGTTGGAGCCACCAGGACTCCGGCCGCCGGAAGTGA
GGCGCCGCCCAGCGGCTGCTGCGGCATCTTGGGCCGCCTCCTCTGCGTGA
GTCGCCACAAGGCCACGCAATCGGTGGCGGGCAGCGATCCCTTCTCCCAG
CTGCAGTTGCAGCGCAAGGGAGTCGCCACACCTGCTGCCGTTTCCGGACA
GCGACGCCGCCGGACGCCGCAGGAAATCTACTTCGAGAGTCGCGGCAAGT
CCTGCAAGAAGCTGCTTAAATTCAATGGCAATTCCAACAAGATACTGCTG
TATCCCGAGGAGGGCTGGGCGAGGACCGCCTCATCCAGTTACTGGACCAT
CACGCCCTGCTTCTGGCAGCCCAATCGCTGCCGCATCGTCGAGTGCTCCG
GAACCCAACGGCGCGCGACGAAAGCCCGGATGCTGCCGCTGGAGCAGCAG
GGATCCCTCCTGATTGCCGGACACTTTCGCCGGACGACGGCGGGGGGCGG
AGGAGCTGCATCGCCAGCGGGGGGCGGGGCATCGGGCAACGGTTCGGTGG
CTGCCACGCCCACGCCCGCAATACCTGCCGATGCAATCCGGACGGGGTCA
ACGGGCTGTGACAAGTCGCAGCCCGCGTGGAACGACGAGTTCAAGCTGTA
TCTGACGTCGAACATCTCGATGGAGGACTACAACATGGGCTACTGCCTCA
CCGGATTCGTGGAGCGCCGCTGCCAGGTGACCAACACCTTCCAGATGACT
CACTTTGCGGTCATCAAGCGCCAGTGGCCACCGTCGCCGTCCAACCTGGG
CAACTCCGCAAGCTTTCTAGACCAT
BO17609.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:09:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30419-RA | 894 | CG30419-PA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30419-RA | 3812 | CG30419-RA | 341..1233 | 15..907 | 4465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24215070..24215587 | 907..390 | 2590 | 100 | Minus |
2R | 25286936 | 2R | 24229079..24229455 | 391..15 | 1885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:09:06 has no hits.
BO17609.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:22 Download gff for
BO17609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30419-RA | 1..894 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:22 Download gff for
BO17609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30419-RA | 339..1229 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:12 Download gff for
BO17609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30419-RA | 343..1233 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:22 Download gff for
BO17609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30419-RA | 332..1232 | 10..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:59 Download gff for
BO17609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30419-RA | 343..1233 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:59 Download gff for
BO17609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24215068..24215585 | 392..909 | 99 | <- | Minus |
2R | 24229079..24229453 | 17..391 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:12 Download gff for
BO17609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20102591..20103108 | 392..909 | 99 | <- | Minus |
arm_2R | 20116602..20116976 | 17..391 | 100 | | Minus |
BO17609.pep Sequence
Translation from 16 to 925
> BO17609.pep
MEMDVNRPTGRHGNLMTISARCSNNNAAEAGAGVGATRTPAAGSEAPPSG
CCGILGRLLCVSRHKATQSVAGSDPFSQLQLQRKGVATPAAVSGQRRRRT
PQEIYFESRGKSCKKLLKFNGNSNKILLYPEEGWARTASSSYWTITPCFW
QPNRCRIVECSGTQRRATKARMLPLEQQGSLLIAGHFRRTTAGGGGAASP
AGGGASGNGSVAATPTPAIPADAIRTGSTGCDKSQPAWNDEFKLYLTSNI
SMEDYNMGYCLTGFVERRCQVTNTFQMTHFAVIKRQWPPSPSNLGNSASF
LDH
BO17609.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30419-PA | 297 | CG30419-PA | 1..297 | 1..297 | 1586 | 100 | Plus |