Clone Sequence Records
BO17615.3prime Sequence
236 bp (236 high quality bases) assembled on 2006-10-13
> BO17615.3prime
ATGGTCTAGAAAGCTTGCGGCGTTGATATAGTACTCCCGCTTCTTCTGGC
ACTTCTCGTACGCAATGTAGCACAGTGCGATGGTGATGAGGACCAGTATG
GTGATGCCCATTATGATGCTGACCAGTATAATCTCATCGTTGATGCTCTT
GTACGAGTGACCACTGTAATAATTGTTGTCCGAATATCCGTATTTGCCGG
CTGTCCTGCCCCCGCCGGCCATGTCGACTGATAACT
BO17615.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:55:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17193-PA | 207 | CG17193-RA | 1..204 | 222..19 | 1020 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17193-RC | 3568 | CG17193-RC | 193..396 | 222..19 | 1020 | 100 | Minus |
CG17193-RB | 3915 | CG17193-RB | 540..743 | 222..19 | 1020 | 100 | Minus |
CG17193-RA | 3918 | CG17193-RA | 543..746 | 222..19 | 1020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20039593..20039736 | 19..162 | 720 | 100 | Plus |
3R | 32079331 | 3R | 20049647..20049709 | 160..222 | 315 | 100 | Plus |
X | 23542271 | X | 17422885..17422989 | 42..146 | 240 | 81.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:59:20 has no hits.
BO17615.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:47 Download gff for
BO17615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17193-PA | 1..207 | 18..222 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:46:39 Download gff for
BO17615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17193-RA | 539..750 | 11..222 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:10:00 Download gff for
BO17615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17193-RA | 543..754 | 11..222 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:10:00 Download gff for
BO17615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20039585..20039737 | 11..167 | 94 | -> | Plus |
3R | 20049654..20049709 | 168..222 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:46:39 Download gff for
BO17615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15865307..15865459 | 11..167 | 94 | -> | Plus |
arm_3R | 15875376..15875431 | 168..222 | 98 | | Plus |
BO17615.complete Sequence
238 bp assembled on 2008-08-28
GenBank Submission: FJ634182
> BO17615.complete
GAAGTTATCAGTCGACATGGCCGGCGGGGGCAGGACAGCCGGCAAATACG
GATATTCGGACAACAATTATTACAGTGGTCACTCGTACAAGAGCATCAAC
GATGAGATTATACTGGTCAGCATCATAATGGGCATCACCATACTGGTCCT
CATCACCATCGCACTGTGCTACATTGCGTACGAGAAGTGCCAGAAGAAGC
GGGAGTACTATATCAACGCCGCAAGCTTTCTAGACCAT
BO17615.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:31:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17193-RC | 207 | CG17193-PC | 1..204 | 17..220 | 1020 | 100 | Plus |
CG17193-RB | 207 | CG17193-PB | 1..204 | 17..220 | 1020 | 100 | Plus |
CG17193-RA | 207 | CG17193-PA | 1..204 | 17..220 | 1020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17193-RC | 3568 | CG17193-RC | 193..396 | 17..220 | 1020 | 100 | Plus |
CG17193-RB | 3915 | CG17193-RB | 540..743 | 17..220 | 1020 | 100 | Plus |
CG17193-RA | 3918 | CG17193-RA | 543..746 | 17..220 | 1020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20039593..20039736 | 220..77 | 720 | 100 | Minus |
3R | 32079331 | 3R | 20049647..20049709 | 79..17 | 315 | 100 | Minus |
X | 23542271 | X | 17422885..17422989 | 197..93 | 240 | 81.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:31:56 has no hits.
BO17615.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:50:12 Download gff for
BO17615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17193-RA | 539..750 | 17..228 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:48 Download gff for
BO17615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17193-RA | 539..742 | 17..222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:48 Download gff for
BO17615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17193-RA | 539..742 | 17..222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:10 Download gff for
BO17615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17193-RA | 543..746 | 17..222 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:10 Download gff for
BO17615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20039591..20039737 | 72..222 | 96 | -> | Minus |
3R | 20049654..20049709 | 17..71 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:48 Download gff for
BO17615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15865313..15865459 | 72..222 | 96 | -> | Minus |
arm_3R | 15875376..15875431 | 17..71 | 98 | | Minus |
BO17615.pep Sequence
Translation from 16 to 238
> BO17615.pep
MAGGGRTAGKYGYSDNNYYSGHSYKSINDEIILVSIIMGITILVLITIAL
CYIAYEKCQKKREYYINAASFLDH
BO17615.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17193-PC | 68 | CG17193-PC | 1..68 | 1..68 | 355 | 100 | Plus |
CG17193-PB | 68 | CG17193-PB | 1..68 | 1..68 | 355 | 100 | Plus |
CG17193-PA | 68 | CG17193-PA | 1..68 | 1..68 | 355 | 100 | Plus |
CG12994-PA | 67 | CG12994-PA | 4..67 | 5..68 | 216 | 69.2 | Plus |