Clone BO17617 Report

Search the DGRC for BO17617

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:176
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG5087-RA
Protein status:BO17617.pep: validated full length
Sequenced Size:3268

Clone Sequence Records

BO17617.3prime Sequence

611 bp (609 high quality bases) assembled on 2006-10-13

> BO17617.3prime
ATGGTCTAGAAAGCTTGCGGACAGCTCGAATCCGGTGTTGCTGCTTACGG
CATAGCGAAGTTTGTCCCGCAGCGTGGACTTCTTTTGGTAGTTGGGCAGC
TTCAGCAGATTGAAGCAGGTCGACGAGGTGGGCAGTCGGTTGAGTGGATC
CTTCTTACGTATGGCGAAGAAACCGCGAATCACACTTCCGATTGTGTCGC
CTGTATCCTCGTCATCACTAACCTCCACGCAACGAATCGAGAATGGTGGC
TCCAGGTGGGCGAAACCCAAAAGCGGCGGCTTTGAGCAGCTGGTGACAAA
CTTTAGGAACAGCTTGCGCTCCTCCTCGGTGAAATCCTTGGCCAGGATAT
CCCAGAGCCAGCAGACCACTTGATGAGTGTCGTGGAAGCCACCGTAGTAA
TGCGTATGCTTTTGCAGATCCTTTAAGTCCAATGGACTAGTGTCCCCAGA
AATAAGGCGCTGCAATTCGGGAGGCGAGAAAAGAGACAACCATTCTGGAT
TGACGATGCTGCGGAAGCCACGATTGAAAGCTATCGTCTGCTCGCGTATC
TGGGTGTTCATGTGGAAAAAGGCCATGTAGTGTATGTAGACCAGCTTGTT
GTGGTCATTAA

BO17617.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5087-PA 3237 CG5087-RA 2642..3234 611..19 2965 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5087-RB 3942 CG5087-RB 2910..3502 611..19 2965 100 Minus
CG5087-RA 3945 CG5087-RA 2913..3505 611..19 2965 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9001473..9001783 611..301 1555 100 Minus
3L 28110227 3L 9001843..9002126 302..19 1420 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:33:37 has no hits.

BO17617.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:49 Download gff for BO17617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5087-PA 2644..3237 15..609 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:13:48 Download gff for BO17617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5087-RA 2913..3508 15..611 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:58 Download gff for BO17617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5087-RA 2913..3508 15..611 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:58 Download gff for BO17617.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9001845..9002129 15..300 99   Minus
3L 9001473..9001783 301..611 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:13:48 Download gff for BO17617.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8994573..8994883 301..611 100 -> Minus
arm_3L 8994945..8995229 15..300 99   Minus

BO17617.5prime Sequence

739 bp (689 high quality bases) assembled on 2006-10-13

> BO17617.5prime
GAAGTTATCAGTCGACATGTTTGCCCAAAACCAAAAGGCCAGCTTCCTGG
AGCAGACAAAGGCGGCGCGGGAGGAGCGGGCACTGGAAAAGCGACGCGAA
CAGGCGGCCATCCTGCTGCAGTCCACGCTCAAGGGATATGCGGCGCGTAG
GAAGTACCAGAAACGAATCATACTCGATTTCGATGCCATGTTCACTGAGA
ATCATGACGATAAGGATGCGGAACTGGAACTCGTGGCAAGCAACGTCTAT
CCGGTGCTTCGTCGCTACCTCACCCAGATCAGGCTGGACAAGAGCGATGT
GCGTGCACGGGAGCGTCTGGAGCGCATCTGCCGTTACATCATCAAGGCAA
TGGAGTCGGAGAACACCAAGCTATCCTATGCCGCCCTCTGTCTTTTTAAG
GAACGCAGCCTGCCCTGGATCGCGCACATCAAGATACTGCTCACGAACTG
CCTGACATTGCTGCCGGAGCTGAAGCCGGAAAACCATGCCGACAGCTTGT
CCCTTGCCCTATTTCTGCACACACTGGTAGTCTTCACGGCGCCCAAATCC
TGGGCGATACTCAGGAATGCCCAGTTTGAGAAACTGCAGCCGGCCATGCN
AAAAATCTGTTGTAATATTCAAGGTCATCTGGTGCAGCACGATTTTTACA
AAATCATGCGGCTCGTTTTGATACGCGGCACTGTTCGCGAGGAAGTGTCT
GTAAAGCCCGTCACCCTGGTGGCCATCATTACACTTTGC

BO17617.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5087-PA 3237 CG5087-RA 1..723 17..739 3546 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5087-RB 3942 CG5087-RB 272..994 17..739 3574 99.6 Plus
CG5087-RA 3945 CG5087-RA 272..994 17..739 3574 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8998663..8999152 172..661 2439 99.8 Plus
3L 28110227 3L 8998455..8998609 17..171 775 100 Plus
3L 28110227 3L 8999207..8999293 653..739 375 95.4 Plus
Blast to na_te.dros performed on 2015-02-13 00:34:56 has no hits.

BO17617.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:50 Download gff for BO17617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5087-PA 1..723 17..739 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:41:22 Download gff for BO17617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5087-RA 266..994 10..739 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:09 Download gff for BO17617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5087-RA 266..994 10..739 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:09 Download gff for BO17617.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8998449..8998609 10..171 98 -> Plus
3L 8998663..8999152 172..661 99 -> Plus
3L 8999216..8999293 662..739 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:41:22 Download gff for BO17617.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8991549..8991709 10..171 98 -> Plus
arm_3L 8991763..8992252 172..661 99 -> Plus
arm_3L 8992316..8992393 662..739 97   Plus

BO17617.complete Sequence

3268 bp assembled on 2007-03-23

GenBank Submission: FJ634183

> BO17617.complete
GAAGTTATCAGTCGACATGTTTGCCCAAAACCAAAAGGCCAGCTTCCTGG
AGCAGACAAAGGCGGCGCGGGAGGAGCGGGCACTGGAAAAGCGACGCGAA
CAGGCGGCCATCCTGCTGCAGTCCACGCTCAAGGGATATGCGGCGCGTAG
GAAGTACCAGAAACGAATCATACTCGATTTCGATGCCATGTTCACTGAGA
ATCATGACGATAAGGATGCGGAACTGGAACTCGTGGCAAGCAACGTCTAT
CCGGTGCTTCGTCGCTACCTCACCCAGATCAGGCTGGACAAGAGCGATGT
GCGTGCACGGGAGCGTCTGGAGCGCATCTGCCGTTACATCATCAAGGCAA
TGGAGTCGGAGAACACCAAGCTATCCTATGCCGCCCTCTGTCTTTTTAAG
GAACGCAGCCTGCCCTGGATCGCGCACATCAAGATACTGCTCACGAACTG
CCTGACATTGCTGCCGGAGCTGAAGCCGGAAAACCATGCCGACAGCTTGT
CCCTTGCCCTATTTCTGCACACACTGGTAGTCTTCACGGCGCCCAAATCC
TGGGCGATACTCAGGAATGCCCAGTTTGAGAAACTGCAGCCGGCCATGCA
AAAAATCTGTTGTAATATTCAAGGTCATCTGGTGCAGCACGATTTTTACA
AAATCATGCGGCTCGTTTTGATACGCGGCACTGTTCGCGAGGAGTTGTCT
GTAAAGCCCGTCACCCTGGTGGCCATCATTACACTTTGCCTTCGTCCCCT
GATCGATGGCAACTTCAGTCGTAATCTACTGGCAAAGTTTCTGTCGGAGA
TTCTGTCTGTGCCCGCTTTAATCTACCATCTGCAACAGAGTGTACCTCAG
TGCCTGGAACAGTTCTCATCGATGGGACTGCTTAAGAAGGCGCTTAGCAT
TTCGGGGGACGTGCAGTGGTTCGAGGAGTTCGGCACTAGCATGCCGGGCA
CCAAGTCCCTGGCTTTTCTGGGAAACATAGTGAATTTGTTCAATATCGAT
GGCCAAGGGGAGTCCAAGGAGTTGGCCTATCCACTACTGACTGAAACCAC
CACATCGCTGTTGGAACTAATACCCAACACGGTGACCACTAAGGGAGTAT
TTACTCAGTGGCACGAGCTTTTAGGATGGCATACTCCGGGTCCGGAGCCT
GCTCAAAATCAGAATGTGGCGCTGATTAAGAAGCAGTTCCACATGTTGTG
GGATCATCGCTGCATAAAACTGTTGCTCGGAGATCTCTTGAAGCAAATCA
ATCTTAACTACGAGCGGATCGAGTTTCAATCTCCCCAACAACCATCTATA
TCGAATCTGCTGCGTCGGGCCTTGGAGCGCAGCTCCACGAGAGGTGTAAA
CTTAATGGGAGTGGCGAGCAGCAAGCAGTCTAAGCAGCAGTGGCGCAAGC
TCGACAGTGCGGAGGTGGTGCAGGTGTCACGAATCTGCGGCATGTATTAT
GCCGCCCTCAACACGCTTTCCCAGATGAAACTGGACATTCTGACTGGCAT
TTGCTACAGCGACAATGTGCTATATGATATTTGGTTGCTAATCACGTCCC
TTGGCCCCAATTGTGGCATGAAGGAGTACTTGGAGCTGCTGAAGTCCGAA
ACAAACTTGCAAAAGCCACAGACCGCCATGCTGATGCTCTTTTGCGACTG
CATGACGCACTACGTAACGATTCTGGATGAACACGAAATGTACACGGAGC
AGAATCCTTTCAAACTCAACGACTACGTGTTGCTGACCTACTTCCTTAAT
AATATTCTCTATAAACTTATTAACGATAATCTTCTGGCAGGTGCCAAGAA
CATTGTCCAGCATCCGGTTTTCCTCTCGCTGCACACTCTGATGCTTTGCT
TGTACCGCCGCGATTGTCGTCGCCCATTCACGCCACCCAAACACTGGCTG
ATACCAGAGGTGAAACCCTCCACGTTCATCAATGACCTGGAAAAGGCCAA
GAGGAATGCGATGCTGCTGCTCGCCAAGATGCCGCACATTATACCGCACG
AGGATCGGGTCAAGTTGTTCCGAAAGTTCGTGCAGAATGAGAAGGCGGTG
ATGGGTCTGACGGAGAGTGCCTGCGCCTCACCTCGATCCGCACTAATTGT
CATTCATCGCGATCGTATTGTGGAGGATGGCTACCGGCAACTGGCCGCCC
AGCCCACGCAAGCCCTAAAAGGTGTTATCCGCGTGCGTTTTATCAATCAA
CAAGGACTGCACGAGGCAGGAATTGATCAGGATGGAGTGTTCAAGGAATT
CCTTGAGGAGACCATCAAAAAGGTGTTCGACCCGTCGCTGAATCTCTTTA
AAACCACCTCGGATCAGCGATTATATCCCTCGCCCATTTCCTACGTCCAG
GACAATCATTTGGAGCTCTTTGAGTTTGTGGGCCGCATGCTGGGCAAGGC
GGTGTACGAGGGCATCGTGGTGGACGTGCCGTTTGCCTCCTTCTTCCTCT
CCCAGCTGCTCGGCCAGACGCAACAGGCCCTGTACTCCTGCATGGACGAG
CTGCCGTCGCTGGACAACGAGTTGTATCGCAGTCTTACCTTCATCAAACA
CTATAAGCAGGATGTGTCCGATCTGAACCTTACCTTTTCCGTGGACCAGG
ATGTAATGGGCAAAATTGTCACGCTCGCTTTGCATCCGGGTGGCAAGGCG
CGTGTGGTTAATGACCACAACAAGCTGGTCTACATACACTACATGGCCTT
TTTCCACATGAACACCCAGATACGCGAGCAGACGATAGCTTTCAATCGTG
GCTTCCGCAGCATCGTCAATCCAGAATGGTTGTCTCTTTTCTCGCCTCCC
GAATTGCAGCGCCTTATTTCTGGGGACACTAGTCCATTGGACTTAAAGGA
TCTGCAAAAGCATACGCATTACTACGGTGGCTTCCACGACACTCATCAAG
TGGTCTGCTGGCTCTGGGATATCCTGGCCAAGGATTTCACCGAGGAGGAG
CGCAAGCTGTTCCTAAAGTTTGTCACCAGCTGCTCAAAGCCGCCGCTTTT
GGGTTTCGCCCACCTGGAGCCACCATTCTCGATTCGTTGCGTGGAGGTTA
GTGATGACGAGGATACAGGCGACACAATCGGAAGTGTGATTCGCGGTTTC
TTCGCCATACGTAAGAAGGATCCACTCAACCGACTGCCCACCTCGTCGAC
CTGCTTCAATCTGCTGAAGCTGCCCAACTACCAAAAGAAGTCCACGCTGC
GGGACAAACTTCGCTATGCCGTAAGCAGCAACACCGGATTCGAGCTGTCC
GCAAGCTTTCTAGACCAT

BO17617.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5087-RA 3237 CG5087-PA 1..3234 17..3250 16170 100 Plus
CG5087-RB 3234 CG5087-PB 1..3231 17..3250 16090 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5087-RA 3945 CG5087-RA 272..3505 17..3250 16170 100 Plus
CG5087-RB 3942 CG5087-RB 272..3502 17..3250 16090 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9000602..9001783 1787..2968 5910 100 Plus
3L 28110227 3L 8999653..9000279 1043..1669 3135 100 Plus
3L 28110227 3L 8998663..8999152 172..661 2450 100 Plus
3L 28110227 3L 8999207..8999597 653..1043 1925 99.5 Plus
3L 28110227 3L 9001843..9002126 2967..3250 1420 100 Plus
3L 28110227 3L 8998455..8998609 17..171 775 100 Plus
3L 28110227 3L 9000339..9000457 1669..1787 595 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:50:03 has no hits.

BO17617.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:24 Download gff for BO17617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5087-RA 1..3237 17..3254 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:54 Download gff for BO17617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5087-RA 264..3506 10..3254 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:24 Download gff for BO17617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5087-RA 278..3505 23..3252 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:24 Download gff for BO17617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5087-RA 264..3506 10..3254 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:51 Download gff for BO17617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5087-RA 278..3505 23..3252 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:51 Download gff for BO17617.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8998461..8998609 23..171 100 -> Plus
3L 8998663..8999152 172..661 100 -> Plus
3L 8999216..8999596 662..1042 100 -> Plus
3L 8999653..9000278 1043..1668 100 -> Plus
3L 9000339..9000457 1669..1787 100 -> Plus
3L 9000603..9001783 1788..2968 100 -> Plus
3L 9001845..9002126 2969..3252 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:24 Download gff for BO17617.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8991561..8991709 23..171 100 -> Plus
arm_3L 8991763..8992252 172..661 100 -> Plus
arm_3L 8992316..8992696 662..1042 100 -> Plus
arm_3L 8992753..8993378 1043..1668 100 -> Plus
arm_3L 8993439..8993557 1669..1787 100 -> Plus
arm_3L 8993703..8994883 1788..2968 100 -> Plus
arm_3L 8994945..8995226 2969..3252 99   Plus

BO17617.pep Sequence

Translation from 16 to 3268

> BO17617.pep
MFAQNQKASFLEQTKAAREERALEKRREQAAILLQSTLKGYAARRKYQKR
IILDFDAMFTENHDDKDAELELVASNVYPVLRRYLTQIRLDKSDVRARER
LERICRYIIKAMESENTKLSYAALCLFKERSLPWIAHIKILLTNCLTLLP
ELKPENHADSLSLALFLHTLVVFTAPKSWAILRNAQFEKLQPAMQKICCN
IQGHLVQHDFYKIMRLVLIRGTVREELSVKPVTLVAIITLCLRPLIDGNF
SRNLLAKFLSEILSVPALIYHLQQSVPQCLEQFSSMGLLKKALSISGDVQ
WFEEFGTSMPGTKSLAFLGNIVNLFNIDGQGESKELAYPLLTETTTSLLE
LIPNTVTTKGVFTQWHELLGWHTPGPEPAQNQNVALIKKQFHMLWDHRCI
KLLLGDLLKQINLNYERIEFQSPQQPSISNLLRRALERSSTRGVNLMGVA
SSKQSKQQWRKLDSAEVVQVSRICGMYYAALNTLSQMKLDILTGICYSDN
VLYDIWLLITSLGPNCGMKEYLELLKSETNLQKPQTAMLMLFCDCMTHYV
TILDEHEMYTEQNPFKLNDYVLLTYFLNNILYKLINDNLLAGAKNIVQHP
VFLSLHTLMLCLYRRDCRRPFTPPKHWLIPEVKPSTFINDLEKAKRNAML
LLAKMPHIIPHEDRVKLFRKFVQNEKAVMGLTESACASPRSALIVIHRDR
IVEDGYRQLAAQPTQALKGVIRVRFINQQGLHEAGIDQDGVFKEFLEETI
KKVFDPSLNLFKTTSDQRLYPSPISYVQDNHLELFEFVGRMLGKAVYEGI
VVDVPFASFFLSQLLGQTQQALYSCMDELPSLDNELYRSLTFIKHYKQDV
SDLNLTFSVDQDVMGKIVTLALHPGGKARVVNDHNKLVYIHYMAFFHMNT
QIREQTIAFNRGFRSIVNPEWLSLFSPPELQRLISGDTSPLDLKDLQKHT
HYYGGFHDTHQVVCWLWDILAKDFTEEERKLFLKFVTSCSKPPLLGFAHL
EPPFSIRCVEVSDDEDTGDTIGSVIRGFFAIRKKDPLNRLPTSSTCFNLL
KLPNYQKKSTLRDKLRYAVSSNTGFELSASFLDH

BO17617.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5087-PA 1078 CG5087-PA 1..1078 1..1078 5596 100 Plus
CG5087-PB 1077 CG5087-PB 1..1077 1..1078 5580 99.9 Plus
CG3356-PA 1122 CG3356-PA 652..1122 612..1078 799 36.4 Plus
CG42797-PF 434 CG42797-PF 23..431 637..1075 464 29.5 Plus
CG42797-PC 436 CG42797-PC 25..433 637..1075 464 29.5 Plus