Clone Sequence Records
BO17617.3prime Sequence
611 bp (609 high quality bases) assembled on 2006-10-13
> BO17617.3prime
ATGGTCTAGAAAGCTTGCGGACAGCTCGAATCCGGTGTTGCTGCTTACGG
CATAGCGAAGTTTGTCCCGCAGCGTGGACTTCTTTTGGTAGTTGGGCAGC
TTCAGCAGATTGAAGCAGGTCGACGAGGTGGGCAGTCGGTTGAGTGGATC
CTTCTTACGTATGGCGAAGAAACCGCGAATCACACTTCCGATTGTGTCGC
CTGTATCCTCGTCATCACTAACCTCCACGCAACGAATCGAGAATGGTGGC
TCCAGGTGGGCGAAACCCAAAAGCGGCGGCTTTGAGCAGCTGGTGACAAA
CTTTAGGAACAGCTTGCGCTCCTCCTCGGTGAAATCCTTGGCCAGGATAT
CCCAGAGCCAGCAGACCACTTGATGAGTGTCGTGGAAGCCACCGTAGTAA
TGCGTATGCTTTTGCAGATCCTTTAAGTCCAATGGACTAGTGTCCCCAGA
AATAAGGCGCTGCAATTCGGGAGGCGAGAAAAGAGACAACCATTCTGGAT
TGACGATGCTGCGGAAGCCACGATTGAAAGCTATCGTCTGCTCGCGTATC
TGGGTGTTCATGTGGAAAAAGGCCATGTAGTGTATGTAGACCAGCTTGTT
GTGGTCATTAA
BO17617.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:56:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5087-PA | 3237 | CG5087-RA | 2642..3234 | 611..19 | 2965 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5087-RB | 3942 | CG5087-RB | 2910..3502 | 611..19 | 2965 | 100 | Minus |
CG5087-RA | 3945 | CG5087-RA | 2913..3505 | 611..19 | 2965 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9001473..9001783 | 611..301 | 1555 | 100 | Minus |
3L | 28110227 | 3L | 9001843..9002126 | 302..19 | 1420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:33:37 has no hits.
BO17617.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:49 Download gff for
BO17617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5087-PA | 2644..3237 | 15..609 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:13:48 Download gff for
BO17617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5087-RA | 2913..3508 | 15..611 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:58 Download gff for
BO17617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5087-RA | 2913..3508 | 15..611 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:58 Download gff for
BO17617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9001845..9002129 | 15..300 | 99 | | Minus |
3L | 9001473..9001783 | 301..611 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:13:48 Download gff for
BO17617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8994573..8994883 | 301..611 | 100 | -> | Minus |
arm_3L | 8994945..8995229 | 15..300 | 99 | | Minus |
BO17617.5prime Sequence
739 bp (689 high quality bases) assembled on 2006-10-13
> BO17617.5prime
GAAGTTATCAGTCGACATGTTTGCCCAAAACCAAAAGGCCAGCTTCCTGG
AGCAGACAAAGGCGGCGCGGGAGGAGCGGGCACTGGAAAAGCGACGCGAA
CAGGCGGCCATCCTGCTGCAGTCCACGCTCAAGGGATATGCGGCGCGTAG
GAAGTACCAGAAACGAATCATACTCGATTTCGATGCCATGTTCACTGAGA
ATCATGACGATAAGGATGCGGAACTGGAACTCGTGGCAAGCAACGTCTAT
CCGGTGCTTCGTCGCTACCTCACCCAGATCAGGCTGGACAAGAGCGATGT
GCGTGCACGGGAGCGTCTGGAGCGCATCTGCCGTTACATCATCAAGGCAA
TGGAGTCGGAGAACACCAAGCTATCCTATGCCGCCCTCTGTCTTTTTAAG
GAACGCAGCCTGCCCTGGATCGCGCACATCAAGATACTGCTCACGAACTG
CCTGACATTGCTGCCGGAGCTGAAGCCGGAAAACCATGCCGACAGCTTGT
CCCTTGCCCTATTTCTGCACACACTGGTAGTCTTCACGGCGCCCAAATCC
TGGGCGATACTCAGGAATGCCCAGTTTGAGAAACTGCAGCCGGCCATGCN
AAAAATCTGTTGTAATATTCAAGGTCATCTGGTGCAGCACGATTTTTACA
AAATCATGCGGCTCGTTTTGATACGCGGCACTGTTCGCGAGGAAGTGTCT
GTAAAGCCCGTCACCCTGGTGGCCATCATTACACTTTGC
BO17617.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5087-PA | 3237 | CG5087-RA | 1..723 | 17..739 | 3546 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5087-RB | 3942 | CG5087-RB | 272..994 | 17..739 | 3574 | 99.6 | Plus |
CG5087-RA | 3945 | CG5087-RA | 272..994 | 17..739 | 3574 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8998663..8999152 | 172..661 | 2439 | 99.8 | Plus |
3L | 28110227 | 3L | 8998455..8998609 | 17..171 | 775 | 100 | Plus |
3L | 28110227 | 3L | 8999207..8999293 | 653..739 | 375 | 95.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:34:56 has no hits.
BO17617.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:50 Download gff for
BO17617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5087-PA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:41:22 Download gff for
BO17617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5087-RA | 266..994 | 10..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:09 Download gff for
BO17617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5087-RA | 266..994 | 10..739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:09 Download gff for
BO17617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8998449..8998609 | 10..171 | 98 | -> | Plus |
3L | 8998663..8999152 | 172..661 | 99 | -> | Plus |
3L | 8999216..8999293 | 662..739 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:41:22 Download gff for
BO17617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8991549..8991709 | 10..171 | 98 | -> | Plus |
arm_3L | 8991763..8992252 | 172..661 | 99 | -> | Plus |
arm_3L | 8992316..8992393 | 662..739 | 97 | | Plus |
BO17617.complete Sequence
3268 bp assembled on 2007-03-23
GenBank Submission: FJ634183
> BO17617.complete
GAAGTTATCAGTCGACATGTTTGCCCAAAACCAAAAGGCCAGCTTCCTGG
AGCAGACAAAGGCGGCGCGGGAGGAGCGGGCACTGGAAAAGCGACGCGAA
CAGGCGGCCATCCTGCTGCAGTCCACGCTCAAGGGATATGCGGCGCGTAG
GAAGTACCAGAAACGAATCATACTCGATTTCGATGCCATGTTCACTGAGA
ATCATGACGATAAGGATGCGGAACTGGAACTCGTGGCAAGCAACGTCTAT
CCGGTGCTTCGTCGCTACCTCACCCAGATCAGGCTGGACAAGAGCGATGT
GCGTGCACGGGAGCGTCTGGAGCGCATCTGCCGTTACATCATCAAGGCAA
TGGAGTCGGAGAACACCAAGCTATCCTATGCCGCCCTCTGTCTTTTTAAG
GAACGCAGCCTGCCCTGGATCGCGCACATCAAGATACTGCTCACGAACTG
CCTGACATTGCTGCCGGAGCTGAAGCCGGAAAACCATGCCGACAGCTTGT
CCCTTGCCCTATTTCTGCACACACTGGTAGTCTTCACGGCGCCCAAATCC
TGGGCGATACTCAGGAATGCCCAGTTTGAGAAACTGCAGCCGGCCATGCA
AAAAATCTGTTGTAATATTCAAGGTCATCTGGTGCAGCACGATTTTTACA
AAATCATGCGGCTCGTTTTGATACGCGGCACTGTTCGCGAGGAGTTGTCT
GTAAAGCCCGTCACCCTGGTGGCCATCATTACACTTTGCCTTCGTCCCCT
GATCGATGGCAACTTCAGTCGTAATCTACTGGCAAAGTTTCTGTCGGAGA
TTCTGTCTGTGCCCGCTTTAATCTACCATCTGCAACAGAGTGTACCTCAG
TGCCTGGAACAGTTCTCATCGATGGGACTGCTTAAGAAGGCGCTTAGCAT
TTCGGGGGACGTGCAGTGGTTCGAGGAGTTCGGCACTAGCATGCCGGGCA
CCAAGTCCCTGGCTTTTCTGGGAAACATAGTGAATTTGTTCAATATCGAT
GGCCAAGGGGAGTCCAAGGAGTTGGCCTATCCACTACTGACTGAAACCAC
CACATCGCTGTTGGAACTAATACCCAACACGGTGACCACTAAGGGAGTAT
TTACTCAGTGGCACGAGCTTTTAGGATGGCATACTCCGGGTCCGGAGCCT
GCTCAAAATCAGAATGTGGCGCTGATTAAGAAGCAGTTCCACATGTTGTG
GGATCATCGCTGCATAAAACTGTTGCTCGGAGATCTCTTGAAGCAAATCA
ATCTTAACTACGAGCGGATCGAGTTTCAATCTCCCCAACAACCATCTATA
TCGAATCTGCTGCGTCGGGCCTTGGAGCGCAGCTCCACGAGAGGTGTAAA
CTTAATGGGAGTGGCGAGCAGCAAGCAGTCTAAGCAGCAGTGGCGCAAGC
TCGACAGTGCGGAGGTGGTGCAGGTGTCACGAATCTGCGGCATGTATTAT
GCCGCCCTCAACACGCTTTCCCAGATGAAACTGGACATTCTGACTGGCAT
TTGCTACAGCGACAATGTGCTATATGATATTTGGTTGCTAATCACGTCCC
TTGGCCCCAATTGTGGCATGAAGGAGTACTTGGAGCTGCTGAAGTCCGAA
ACAAACTTGCAAAAGCCACAGACCGCCATGCTGATGCTCTTTTGCGACTG
CATGACGCACTACGTAACGATTCTGGATGAACACGAAATGTACACGGAGC
AGAATCCTTTCAAACTCAACGACTACGTGTTGCTGACCTACTTCCTTAAT
AATATTCTCTATAAACTTATTAACGATAATCTTCTGGCAGGTGCCAAGAA
CATTGTCCAGCATCCGGTTTTCCTCTCGCTGCACACTCTGATGCTTTGCT
TGTACCGCCGCGATTGTCGTCGCCCATTCACGCCACCCAAACACTGGCTG
ATACCAGAGGTGAAACCCTCCACGTTCATCAATGACCTGGAAAAGGCCAA
GAGGAATGCGATGCTGCTGCTCGCCAAGATGCCGCACATTATACCGCACG
AGGATCGGGTCAAGTTGTTCCGAAAGTTCGTGCAGAATGAGAAGGCGGTG
ATGGGTCTGACGGAGAGTGCCTGCGCCTCACCTCGATCCGCACTAATTGT
CATTCATCGCGATCGTATTGTGGAGGATGGCTACCGGCAACTGGCCGCCC
AGCCCACGCAAGCCCTAAAAGGTGTTATCCGCGTGCGTTTTATCAATCAA
CAAGGACTGCACGAGGCAGGAATTGATCAGGATGGAGTGTTCAAGGAATT
CCTTGAGGAGACCATCAAAAAGGTGTTCGACCCGTCGCTGAATCTCTTTA
AAACCACCTCGGATCAGCGATTATATCCCTCGCCCATTTCCTACGTCCAG
GACAATCATTTGGAGCTCTTTGAGTTTGTGGGCCGCATGCTGGGCAAGGC
GGTGTACGAGGGCATCGTGGTGGACGTGCCGTTTGCCTCCTTCTTCCTCT
CCCAGCTGCTCGGCCAGACGCAACAGGCCCTGTACTCCTGCATGGACGAG
CTGCCGTCGCTGGACAACGAGTTGTATCGCAGTCTTACCTTCATCAAACA
CTATAAGCAGGATGTGTCCGATCTGAACCTTACCTTTTCCGTGGACCAGG
ATGTAATGGGCAAAATTGTCACGCTCGCTTTGCATCCGGGTGGCAAGGCG
CGTGTGGTTAATGACCACAACAAGCTGGTCTACATACACTACATGGCCTT
TTTCCACATGAACACCCAGATACGCGAGCAGACGATAGCTTTCAATCGTG
GCTTCCGCAGCATCGTCAATCCAGAATGGTTGTCTCTTTTCTCGCCTCCC
GAATTGCAGCGCCTTATTTCTGGGGACACTAGTCCATTGGACTTAAAGGA
TCTGCAAAAGCATACGCATTACTACGGTGGCTTCCACGACACTCATCAAG
TGGTCTGCTGGCTCTGGGATATCCTGGCCAAGGATTTCACCGAGGAGGAG
CGCAAGCTGTTCCTAAAGTTTGTCACCAGCTGCTCAAAGCCGCCGCTTTT
GGGTTTCGCCCACCTGGAGCCACCATTCTCGATTCGTTGCGTGGAGGTTA
GTGATGACGAGGATACAGGCGACACAATCGGAAGTGTGATTCGCGGTTTC
TTCGCCATACGTAAGAAGGATCCACTCAACCGACTGCCCACCTCGTCGAC
CTGCTTCAATCTGCTGAAGCTGCCCAACTACCAAAAGAAGTCCACGCTGC
GGGACAAACTTCGCTATGCCGTAAGCAGCAACACCGGATTCGAGCTGTCC
GCAAGCTTTCTAGACCAT
BO17617.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5087-RA | 3237 | CG5087-PA | 1..3234 | 17..3250 | 16170 | 100 | Plus |
CG5087-RB | 3234 | CG5087-PB | 1..3231 | 17..3250 | 16090 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5087-RA | 3945 | CG5087-RA | 272..3505 | 17..3250 | 16170 | 100 | Plus |
CG5087-RB | 3942 | CG5087-RB | 272..3502 | 17..3250 | 16090 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9000602..9001783 | 1787..2968 | 5910 | 100 | Plus |
3L | 28110227 | 3L | 8999653..9000279 | 1043..1669 | 3135 | 100 | Plus |
3L | 28110227 | 3L | 8998663..8999152 | 172..661 | 2450 | 100 | Plus |
3L | 28110227 | 3L | 8999207..8999597 | 653..1043 | 1925 | 99.5 | Plus |
3L | 28110227 | 3L | 9001843..9002126 | 2967..3250 | 1420 | 100 | Plus |
3L | 28110227 | 3L | 8998455..8998609 | 17..171 | 775 | 100 | Plus |
3L | 28110227 | 3L | 9000339..9000457 | 1669..1787 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:50:03 has no hits.
BO17617.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:24 Download gff for
BO17617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5087-RA | 1..3237 | 17..3254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:54 Download gff for
BO17617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5087-RA | 264..3506 | 10..3254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:24 Download gff for
BO17617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5087-RA | 278..3505 | 23..3252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:24 Download gff for
BO17617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5087-RA | 264..3506 | 10..3254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:51 Download gff for
BO17617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5087-RA | 278..3505 | 23..3252 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:51 Download gff for
BO17617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8998461..8998609 | 23..171 | 100 | -> | Plus |
3L | 8998663..8999152 | 172..661 | 100 | -> | Plus |
3L | 8999216..8999596 | 662..1042 | 100 | -> | Plus |
3L | 8999653..9000278 | 1043..1668 | 100 | -> | Plus |
3L | 9000339..9000457 | 1669..1787 | 100 | -> | Plus |
3L | 9000603..9001783 | 1788..2968 | 100 | -> | Plus |
3L | 9001845..9002126 | 2969..3252 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:24 Download gff for
BO17617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8991561..8991709 | 23..171 | 100 | -> | Plus |
arm_3L | 8991763..8992252 | 172..661 | 100 | -> | Plus |
arm_3L | 8992316..8992696 | 662..1042 | 100 | -> | Plus |
arm_3L | 8992753..8993378 | 1043..1668 | 100 | -> | Plus |
arm_3L | 8993439..8993557 | 1669..1787 | 100 | -> | Plus |
arm_3L | 8993703..8994883 | 1788..2968 | 100 | -> | Plus |
arm_3L | 8994945..8995226 | 2969..3252 | 99 | | Plus |
BO17617.pep Sequence
Translation from 16 to 3268
> BO17617.pep
MFAQNQKASFLEQTKAAREERALEKRREQAAILLQSTLKGYAARRKYQKR
IILDFDAMFTENHDDKDAELELVASNVYPVLRRYLTQIRLDKSDVRARER
LERICRYIIKAMESENTKLSYAALCLFKERSLPWIAHIKILLTNCLTLLP
ELKPENHADSLSLALFLHTLVVFTAPKSWAILRNAQFEKLQPAMQKICCN
IQGHLVQHDFYKIMRLVLIRGTVREELSVKPVTLVAIITLCLRPLIDGNF
SRNLLAKFLSEILSVPALIYHLQQSVPQCLEQFSSMGLLKKALSISGDVQ
WFEEFGTSMPGTKSLAFLGNIVNLFNIDGQGESKELAYPLLTETTTSLLE
LIPNTVTTKGVFTQWHELLGWHTPGPEPAQNQNVALIKKQFHMLWDHRCI
KLLLGDLLKQINLNYERIEFQSPQQPSISNLLRRALERSSTRGVNLMGVA
SSKQSKQQWRKLDSAEVVQVSRICGMYYAALNTLSQMKLDILTGICYSDN
VLYDIWLLITSLGPNCGMKEYLELLKSETNLQKPQTAMLMLFCDCMTHYV
TILDEHEMYTEQNPFKLNDYVLLTYFLNNILYKLINDNLLAGAKNIVQHP
VFLSLHTLMLCLYRRDCRRPFTPPKHWLIPEVKPSTFINDLEKAKRNAML
LLAKMPHIIPHEDRVKLFRKFVQNEKAVMGLTESACASPRSALIVIHRDR
IVEDGYRQLAAQPTQALKGVIRVRFINQQGLHEAGIDQDGVFKEFLEETI
KKVFDPSLNLFKTTSDQRLYPSPISYVQDNHLELFEFVGRMLGKAVYEGI
VVDVPFASFFLSQLLGQTQQALYSCMDELPSLDNELYRSLTFIKHYKQDV
SDLNLTFSVDQDVMGKIVTLALHPGGKARVVNDHNKLVYIHYMAFFHMNT
QIREQTIAFNRGFRSIVNPEWLSLFSPPELQRLISGDTSPLDLKDLQKHT
HYYGGFHDTHQVVCWLWDILAKDFTEEERKLFLKFVTSCSKPPLLGFAHL
EPPFSIRCVEVSDDEDTGDTIGSVIRGFFAIRKKDPLNRLPTSSTCFNLL
KLPNYQKKSTLRDKLRYAVSSNTGFELSASFLDH
BO17617.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5087-PA | 1078 | CG5087-PA | 1..1078 | 1..1078 | 5596 | 100 | Plus |
CG5087-PB | 1077 | CG5087-PB | 1..1077 | 1..1078 | 5580 | 99.9 | Plus |
CG3356-PA | 1122 | CG3356-PA | 652..1122 | 612..1078 | 799 | 36.4 | Plus |
CG42797-PF | 434 | CG42797-PF | 23..431 | 637..1075 | 464 | 29.5 | Plus |
CG42797-PC | 436 | CG42797-PC | 25..433 | 637..1075 | 464 | 29.5 | Plus |