Clone Sequence Records
BO17619.complete Sequence
3532 bp assembled on 2010-04-13
GenBank Submission: KX797670
> BO17619.complete
GAAGTTATCAGTCGACATGAGGGTCTCTTTGGCACTGTGGGGCACTTTGT
GCCTGTGGGTGGTCACCGCGAATGCACAAGGATTTATACCACCACCCAAT
GTCGGCCTTCACAATGGGCCGCCCTTTCACAACTCGCAGCGCCGTCAGCT
AAATCTGCAGCAGTACAATCAGCAAAACTTTGTCCAGGCGGGCGTGGAGC
TGCCCATTCCCCACCGCTCCCAACATGGCCCCCATCCGCAGCACACGCAT
CTGCATCACCAGCAGCAGCCGCAGCAGCAGCACCGCTTCGGGCAGTTCCC
ACAGCAGCAGCAGCAGCAGCATCAGCAGCCCCACAGCAATCAGCAGTTCC
AACGTTCGACCCAAAATCAACTTCAAACCGCTCCACAGTTCCCGCAGCAG
CAGCAGCAGTTGCCCTCTCCTGCCGCCGGTTTGGATCTGCATCATCAAAA
CTTCTTGGACTTGCGCAACTTTGCTGGCTCCCAGCAGCAGCAGCCAAATC
AGCAACAACATCAGCAGCGCCATAAGCAATTTGATTCCCGCTTGCAGTCC
ACTGCCTTCCCGCCACAACCATCTCCGGAAACTTACCAGCAACAGCAATT
GCAGCAACAGCAACAGCAGCAGTTTGCCTACCAGCAGCCCCAGCAGTTTG
GACCACAGGTTCTGCCCCAGACCACACAGAAGCTGCCCAGCCAGGCACCC
GTGCCCACTTTCCAGACGATTCCCCAGCAGCAGAGCCAGTTTAACTACCA
GCCACAGTCCAGTCAGCAGCAGCAGTATCAGCTGACTCCCCAATTGGGAT
TGCCAGTGCCGCAGATATTTAGCAATGTTCAGGCCACACCCTTCCCGGAG
CCAACCAGAGGAAGCTTCCAGCAACAGCAGCAGCCAGTGCAGCAGCCTCA
GTTCCAGCATCAATTTGTTAATGCTCCATCGCCAATTCAGCCACAGGCCC
AACCAGCTGACCAGGAATACAAGCAAAAGCTAATCCAGAAGCACGAGCAA
TTTGTGGCCAAGCAGTACGAAAAGTCGCAGCACAAGGTGCGTCAGCAGCA
CGAAGAATTCCTTCTGAAGCAGCACCAAATCAAGCAGCACATCCTGCCGA
CCATTGTGACCCAACACAATGCCAACTACCAGAACTCACCATATGTGGCA
GCACCGGCACGTGGAAGACCGGTGGCTCATCCCACTGAGTACAATCAGTT
CAACAGTGCTCTGCAACAGTACTACAAGGAGCACCCGACGACAACGACCA
CCACCACGACGACGACCACAACCACTGAGGCCACAACCACACCAAAGAAG
AACATCTATGCTCAGGTTAAGTCGGAACTGGGAAAATTCCCAAGTCAGAA
AAGCAAGAAGCCCGTGAAGACCATTGCCCGGGATGATTTGCTCAAGCAAC
TCAAGGCAGCCTTGTCCGAAGCACCACAACAACCACTGACGGGAAACAAG
ACCTACGATGAGATGGACCTGGTTCTGCCCAACGGCCAGCGGGTTCAGGT
GATTCGTACCACAGATCCCAATTTGGTCCAGGGGCAAAAGGCATACTCCC
AGGAGCAACTGCAAACTTTGCTAGCTCAACAGGCGTTGGGTGGCGAAACC
AAGCTAAGTTTGAGTGATGTGGCTCCCAGTAAGAGCAAAGATCTAGAGCT
GCCCGGTGGTGGAAAGGTTCAAATTCTGCGTTCCCCCGATCCTCAGGAGT
CGGACACCCTTCCTTCCGGCTCTCTGCCCGGTGGTGTTGACCTCTCTAGC
TTGGCCGCTCTCTACGGCGGTGGTGCCGGTGATATTCAGGGCATCAGTAA
TGGAGCCAATAGCATTGCCAGTTCCGCAGTCATAACCTCGGATTCCGATG
AGCCACCATCCTTGGAGGAGCTGGCCAAGCGTGGACTCATTCCCGATGGC
TATGAGATTGAGGGTCTCAGCCCAAAGTCACAGGCACCGGCCACAGCTGC
ACCACCAACTTTGCCGCCCAAGAAGAAGGCCACCTACGTTTACCTAGAGG
AGCAAACCGATGGTAGCTTCAAAATCCAAGGGGTGAAGGCCAACGGAGAG
AAGGAGACCAAGCAAACCGGATCCGAAGTGGAAAGCATTCTGGAGCGCAT
CAGAAGTGGAGAAATTAAGCTGCCGCCTTCGGTTTCCCGCCTAACATTGC
CCAACGATGAGCTGGTAGAGATTAAGAGCGGCAAGATTATTCAAACCACG
CGTGCACCCACCACGACCACAAGCACAACTACCACCACCACAACTACTCC
AACGCCTTTCATTTCGCGTGGAACACCCAGCAATCACAGGCAGTATCACC
CGTCGAGGACCTCGACCACCACCACCACCACCACCACAACCACTGCTCCC
ACAACCGCTCGGCACAATTTGATTTTCGAGAGCAGCACCAGTCATGTAAA
TGCTGCTAGTCTGATCCGCACCACCACATCTCCCATTTACGGAGGTTCCA
CAGTGACAGTTTCCCCATATCTGGAAGGTGTATCCACCCACTTGCCGGTG
GTGACCGAGAGGCTGTCCGATGTGGCGAACAATGCAGAGCTCCTGCCACC
TATTCCCCAATATGCCGATGCCCTCGTCCAGGAGACGGAGAACACCGAGA
AGGCCGCTCAAGCAAATCCCCCAACCAGTTCGGTGCTGTCCAATCCTAGC
GAAGACCTCCTCCAGATATTGAAGACTAACGGACTTTTCGCCATGGCCAA
GTATCTAAGGCAGTCGGGTCTGGACAGCATACTCAACGAAACCGGACCGT
ATACCATCTTTGTTCCCACTGATAAAGCCTTCAAGAATCTTTTGGTGCAG
TTGGGAGGACCAGAAAGAGCTGAGGAAAAGTTCCAGTCCAATCCCAGATT
GCTGAGCGGGCTCCTACTCCATCATGTGATCCCAGGAGCTTTCGAGATCG
CCACCCTGCAGGACGAGATGACTGGCGTTTCCCTGGCTGGAACACAGCTG
CGAGTTAACCAGTACAACATGCACGACCAGGAGTGGAATGATGTGACTCT
CACCACCATCAACGGAGCCATGGTTGTGCTGAACAAAAAGGACATCAAGA
TCCCGCAAGGAGTGGCCCACGCAGTCGATCGCGTTATGTTCCCACTGCCC
GTTGGAGATATCCTGCAGACTCTGCAGTCTGATCGTGAGGGTCGCTTCAG
CAATTTCCTGAAGATTCTGTACACCTCTGGACTGTCTGAAAAGCTTCAGA
GCAAGGGTGTCAAGACGTACACTGTTTTCGCTCCTGTGGACAAAAGCTTC
AGCGAACTGGATTCTGATACACTGGAGAAGCTGTACAATGACAAAGATAC
TGCCGAACAGTTTGCCATGAAGCACATTGTTCCCGGGGCTCTTTTCTCTG
CTGGTATGCGTTTCTACCAGGTTAAGGACTCTTTGTCCACTGGCAAAACC
GTAATCCTCCAGAAGACATCCGCGGGCAAGATTAAGGTCAACGATGCACA
GATGGTCACATCCAATATTCCAGCCACGAATGGAGTGATTCACGCCCTGG
ATGGAGTCTTGGCGGCAAGCTTTCTAGACCAT
BO17619.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43333-RA | 3501 | CG43333-PA | 1..3498 | 17..3514 | 17490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43333-RA | 4314 | CG43333-RA | 379..3877 | 16..3514 | 17495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14164777..14167104 | 2860..533 | 11640 | 100 | Minus |
| 2L | 23513712 | 2L | 14167168..14167583 | 533..118 | 2080 | 100 | Minus |
| 2L | 23513712 | 2L | 14163945..14164253 | 3514..3206 | 1545 | 100 | Minus |
| 2L | 23513712 | 2L | 14164307..14164516 | 3208..2999 | 1050 | 100 | Minus |
| 2L | 23513712 | 2L | 14164577..14164715 | 2998..2860 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 14180206..14180308 | 118..16 | 515 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6677..7016 | 167..515 | 310 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2242..2645 | 141..529 | 286 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2662 | 292..645 | 280 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2971 | 482..1089 | 274 | 54.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2922 | 233..782 | 247 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6952 | 258..502 | 224 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..3005 | 260..961 | 222 | 53.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6945 | 482..666 | 214 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6914 | 483..686 | 206 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..7200 | 482..900 | 196 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2567 | 482..663 | 191 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2537 | 304..529 | 188 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2980 | 239..621 | 188 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..7034 | 296..638 | 183 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2925 | 493..1129 | 179 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6951 | 842..1082 | 176 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6919 | 869..1057 | 169 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6919 | 869..1000 | 165 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2590..2966 | 261..646 | 163 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2536 | 869..1101 | 157 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6944 | 482..620 | 144 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6892 | 482..529 | 141 | 77.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2724..2973 | 267..530 | 139 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1571 | 482..529 | 132 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1102 | 486..529 | 130 | 77.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2571 | 869..1108 | 128 | 54.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..7202 | 869..1304 | 127 | 51.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1119 | 852..912 | 122 | 68.9 | Plus |
BO17619.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:23:39 Download gff for
BO17619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32972-RB | 375..3872 | 17..3516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:51:50 Download gff for
BO17619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43333-RA | 380..3877 | 17..3516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:19 Download gff for
BO17619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43333-RA | 380..3877 | 17..3516 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:19 Download gff for
BO17619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14164777..14167103 | 534..2860 | 100 | <- | Minus |
| 2L | 14163942..14164252 | 3207..3516 | 99 | <- | Minus |
| 2L | 14164309..14164516 | 2999..3206 | 100 | <- | Minus |
| 2L | 14164577..14164714 | 2861..2998 | 100 | <- | Minus |
| 2L | 14167168..14167582 | 119..533 | 100 | <- | Minus |
| 2L | 14180206..14180307 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:51:50 Download gff for
BO17619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14163942..14164252 | 3207..3516 | 99 | <- | Minus |
| arm_2L | 14164309..14164516 | 2999..3206 | 100 | <- | Minus |
| arm_2L | 14164577..14164714 | 2861..2998 | 100 | <- | Minus |
| arm_2L | 14164777..14167103 | 534..2860 | 100 | <- | Minus |
| arm_2L | 14180206..14180307 | 17..118 | 100 | | Minus |
| arm_2L | 14167168..14167582 | 119..533 | 100 | <- | Minus |
BO17619.3prime Sequence
787 bp (771 high quality bases) assembled on 2006-10-13
> BO17619.3prime
ATGGTCTAGAAAGCTTGCCGCCAAGACTCCATCCAGGGCGTGAATCACTC
CATTCGTGGCTGGAATATTGGATGTGACCATCTGTGCATCGTTGACCTTA
ATCTTGCCCGCGGATGTCTTCTGGAGGATTACGGTTTTGCCAGTGGACAA
AGAGTCCTTAACCTGGTAGAAACGCATACCAGCAGAGAAAAGAGCCCCGG
GAACAATGTGCTTCATGGCAAACTGTTCGGCAGTATCTTTGTCATTGTAC
AGCTTCTCCAGTGTATCAGAATCCAGTTCGCTGAAGCTTTTGTCCACAGG
AGCGAAAACAGTGTACGTCTTGACACCCTTGCTCTGAAGCTTTTCAGACA
GTCCAGAGGTGTACAGAATCTTCAGGAAATTGCTGAAGCGACCCTCACGA
TCAGACTGCAGAGTCTGCAGGATATCTCCAACGGGCAGTGGGAACATAAC
GCGATCGACTGCGTGGGCCACTCCTTGCGGGATCTTGATGTCCTTTTTGT
TCAGCACAACCATGGCTCCGTTGATGGTGGTGAGAGTCACATCATTCCAC
TCCTGGTCGTGCATGTTGTACTGGTTAACTCGCAGCTGTGTTCCAGCCAG
GGAAACGCCAGTCATCTCGTCCTGCAGGGTGGCGATCTCGAAAGCTCCTG
GGATCACATGATGGAGTAGGAGCCCGCTCAGCAATCTGGGATTGGACTGG
AACTTTTCCTCAGCTCTTTCTGGTCCTCCCAACTGCACCAAAAGATTCTT
GAAGGCTTTATCAGTGGGAACAAAGATGGTATACGGT
BO17619.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:56:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32972-PB | 3501 | CG32972-RB | 2730..3498 | 787..19 | 3845 | 100 | Minus |
| CG32972-PA | 5562 | CG32972-RA | 2730..3420 | 787..97 | 3455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43333-RA | 4314 | CG43333-RA | 3109..3877 | 787..19 | 3845 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14163945..14164253 | 19..327 | 1545 | 100 | Plus |
| 2L | 23513712 | 2L | 14164307..14164516 | 325..534 | 1050 | 100 | Plus |
| 2L | 23513712 | 2L | 14164577..14164715 | 535..673 | 695 | 100 | Plus |
| 2L | 23513712 | 2L | 14164777..14164891 | 673..787 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:35:10 has no hits.
BO17619.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:51 Download gff for
BO17619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32972-PB | 2730..3501 | 16..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:41:25 Download gff for
BO17619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43333-RA | 3109..3882 | 14..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:10 Download gff for
BO17619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43333-RA | 3109..3882 | 14..787 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:10 Download gff for
BO17619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14163940..14164252 | 14..326 | 99 | <- | Plus |
| 2L | 14164309..14164516 | 327..534 | 100 | <- | Plus |
| 2L | 14164577..14164714 | 535..672 | 100 | <- | Plus |
| 2L | 14164777..14164891 | 673..787 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:41:25 Download gff for
BO17619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14163940..14164252 | 14..326 | 99 | <- | Plus |
| arm_2L | 14164309..14164516 | 327..534 | 100 | <- | Plus |
| arm_2L | 14164577..14164714 | 535..672 | 100 | <- | Plus |
| arm_2L | 14164777..14164891 | 673..787 | 100 | | Plus |
BO17619.5prime Sequence
854 bp (714 high quality bases) assembled on 2006-10-13
> BO17619.5prime
GAAGTTATCAGTCGACATGAGGGTCTCTTTGGCACTGTGGGGCACTTTGT
GCCTGTGGGTGGTCACCGCGAATGCACAAGGATTTATACCACCACCCAAT
GTCGGCCTTCACAATGGGCCGCCCTTTCACAACTCGCAGCGCCGTCAGCT
AAATCTGCAGCAGTACAATCAGCAAAACTTTGTCCAGGCGGGCGTGGAGC
TGCCCATTCCCCACCGCTCCCAACATGGCCCCCATCCGCAGCACACGCAT
CTGCATCACCAGCAGCAGCCGCAGCAGCAGCACCGCTTCGGGCAGTTCCC
ACAGCAGCAGCAGCAGCAGCATCAGCAGCCCCACAGCAATCAGCAGTTCC
AACGTTCGACCCAAAATCAACTTCAAACCGCTCCACAGTTCCCGCAGCAG
CAGCAGCAGTTGCCCTCTCCTGCCGCCGGTTTGGATCTGCATCATCAAAA
CTTCTTGGACTTGCGCAACTTTGCTGGCTCCCAGCAGCAGCAGCCAAATC
AGCAACAACATCAGCAGCGCCATAAGCAATTTGATTCCCGCTTGCAGTCC
ACTGCCTTCCCGCCACAACCATCTCCGGAAACTTACCAGCAACAGCAATT
GCAGCAACAGCAACAGCAGCAGTTTGCCTACCAGCAGCCCCAGCAGTTTG
GACCACAGGTTCTGCCCCAGACCACACAGAAGCTGCCCAGCCAGGCACCC
GTGCCCACTTTCCAGACGATTCCCCAGCAGCAGAGCCAGTTTAACTACCA
GCCACAGTCCAGTCAGCAGCAGCAGTATCAGCTGACTCCCCAATTGGGAT
TGCCAGTGCCGCAGATATTTAGCAATGTTCAGGCCACACCCTTCCCGGAG
CAAA
BO17619.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32972-PB | 3501 | CG32972-RB | 1..835 | 17..851 | 4175 | 100 | Plus |
| CG32972-PA | 5562 | CG32972-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
| CG14366-PA | 2331 | CG14366-RA | 820..854 | 587..621 | 150 | 97.1 | Plus |
| CG12690-PA | 3807 | CHES-1-like-RA | 3431..3462 | 591..622 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:42:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43333-RA | 4314 | CG43333-RA | 379..1214 | 16..851 | 4180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:42:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14167168..14167583 | 533..118 | 2080 | 100 | Minus |
| 2L | 23513712 | 2L | 14166786..14167104 | 851..533 | 1595 | 100 | Minus |
| 2L | 23513712 | 2L | 14180206..14180308 | 118..16 | 515 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 03:42:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6677..7016 | 167..515 | 310 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2242..2645 | 141..529 | 286 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2662 | 292..645 | 280 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2922 | 233..782 | 247 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6952 | 258..502 | 224 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2659 | 260..621 | 220 | 56 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2669 | 482..796 | 218 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6945 | 482..666 | 214 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6914 | 483..686 | 206 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2539 | 482..642 | 194 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2537 | 304..529 | 188 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2980 | 239..621 | 188 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..7079 | 482..779 | 186 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..7034 | 296..638 | 183 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2534 | 482..646 | 166 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2590..2966 | 261..646 | 163 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2513 | 493..693 | 159 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6944 | 482..620 | 144 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6892 | 482..529 | 141 | 77.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2724..2973 | 267..530 | 139 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2549 | 482..633 | 132 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1571 | 482..529 | 132 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1102 | 486..529 | 130 | 77.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 978..1011 | 482..515 | 116 | 82.4 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..7995 | 488..528 | 115 | 75.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9439 | 488..528 | 115 | 75.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5630..5682 | 483..531 | 111 | 73.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7085..7137 | 483..531 | 111 | 73.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1493..1547 | 476..529 | 110 | 69.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 112..151 | 478..517 | 110 | 75 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11290..11329 | 478..517 | 110 | 75 | Plus |
BO17619.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:52 Download gff for
BO17619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32972-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:02:36 Download gff for
BO17619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43333-RA | 372..1214 | 10..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:57:48 Download gff for
BO17619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43333-RA | 372..1214 | 10..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:57:48 Download gff for
BO17619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14166786..14167103 | 534..851 | 100 | <- | Minus |
| 2L | 14167168..14167582 | 119..533 | 100 | <- | Minus |
| 2L | 14180206..14180315 | 10..118 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:02:36 Download gff for
BO17619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14166786..14167103 | 534..851 | 100 | <- | Minus |
| arm_2L | 14167168..14167582 | 119..533 | 100 | <- | Minus |
| arm_2L | 14180206..14180315 | 10..118 | 97 | | Minus |
BO17619.pep Sequence
Translation from 16 to 3532
> BO17619.pep
MRVSLALWGTLCLWVVTANAQGFIPPPNVGLHNGPPFHNSQRRQLNLQQY
NQQNFVQAGVELPIPHRSQHGPHPQHTHLHHQQQPQQQHRFGQFPQQQQQ
QHQQPHSNQQFQRSTQNQLQTAPQFPQQQQQLPSPAAGLDLHHQNFLDLR
NFAGSQQQQPNQQQHQQRHKQFDSRLQSTAFPPQPSPETYQQQQLQQQQQ
QQFAYQQPQQFGPQVLPQTTQKLPSQAPVPTFQTIPQQQSQFNYQPQSSQ
QQQYQLTPQLGLPVPQIFSNVQATPFPEPTRGSFQQQQQPVQQPQFQHQF
VNAPSPIQPQAQPADQEYKQKLIQKHEQFVAKQYEKSQHKVRQQHEEFLL
KQHQIKQHILPTIVTQHNANYQNSPYVAAPARGRPVAHPTEYNQFNSALQ
QYYKEHPTTTTTTTTTTTTTEATTTPKKNIYAQVKSELGKFPSQKSKKPV
KTIARDDLLKQLKAALSEAPQQPLTGNKTYDEMDLVLPNGQRVQVIRTTD
PNLVQGQKAYSQEQLQTLLAQQALGGETKLSLSDVAPSKSKDLELPGGGK
VQILRSPDPQESDTLPSGSLPGGVDLSSLAALYGGGAGDIQGISNGANSI
ASSAVITSDSDEPPSLEELAKRGLIPDGYEIEGLSPKSQAPATAAPPTLP
PKKKATYVYLEEQTDGSFKIQGVKANGEKETKQTGSEVESILERIRSGEI
KLPPSVSRLTLPNDELVEIKSGKIIQTTRAPTTTTSTTTTTTTTPTPFIS
RGTPSNHRQYHPSRTSTTTTTTTTTTAPTTARHNLIFESSTSHVNAASLI
RTTTSPIYGGSTVTVSPYLEGVSTHLPVVTERLSDVANNAELLPPIPQYA
DALVQETENTEKAAQANPPTSSVLSNPSEDLLQILKTNGLFAMAKYLRQS
GLDSILNETGPYTIFVPTDKAFKNLLVQLGGPERAEEKFQSNPRLLSGLL
LHHVIPGAFEIATLQDEMTGVSLAGTQLRVNQYNMHDQEWNDVTLTTING
AMVVLNKKDIKIPQGVAHAVDRVMFPLPVGDILQTLQSDREGRFSNFLKI
LYTSGLSEKLQSKGVKTYTVFAPVDKSFSELDSDTLEKLYNDKDTAEQFA
MKHIVPGALFSAGMRFYQVKDSLSTGKTVILQKTSAGKIKVNDAQMVTSN
IPATNGVIHALDGVLAASFLDH
BO17619.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:16:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43333-PA | 1166 | CG32972-PB | 1..1166 | 1..1166 | 6033 | 100 | Plus |
| ptip-PA | 2294 | CG32133-PA | 808..1312 | 79..571 | 276 | 26.9 | Plus |
| ptip-PA | 2294 | CG32133-PA | 539..1037 | 41..521 | 269 | 26 | Plus |
| velo-PC | 1833 | CG10107-PC | 76..370 | 73..370 | 262 | 32.3 | Plus |
| velo-PA | 1833 | CG10107-PA | 76..370 | 73..370 | 262 | 32.3 | Plus |
| CG10543-PD | 1631 | CG10543-PD | 1146..1498 | 44..345 | 258 | 32.7 | Plus |
| ptip-PA | 2294 | CG32133-PA | 816..1371 | 41..522 | 254 | 26.1 | Plus |
| ptip-PA | 2294 | CG32133-PA | 652..1125 | 25..522 | 252 | 25.3 | Plus |
| ptip-PA | 2294 | CG32133-PA | 432..902 | 43..522 | 243 | 24.5 | Plus |
| ptip-PA | 2294 | CG32133-PA | 197..526 | 67..375 | 239 | 28.9 | Plus |
| ptip-PA | 2294 | CG32133-PA | 186..582 | 73..522 | 236 | 26.1 | Plus |
| velo-PC | 1833 | CG10107-PC | 76..461 | 38..442 | 231 | 28.4 | Plus |
| velo-PA | 1833 | CG10107-PA | 76..461 | 38..442 | 231 | 28.4 | Plus |
| ptip-PA | 2294 | CG32133-PA | 1114..1633 | 41..552 | 221 | 25.5 | Plus |
| ptip-PA | 2294 | CG32133-PA | 1016..1368 | 35..360 | 220 | 29.7 | Plus |
| ptip-PA | 2294 | CG32133-PA | 219..602 | 38..354 | 218 | 28.4 | Plus |
| velo-PC | 1833 | CG10107-PC | 98..396 | 36..310 | 218 | 30.9 | Plus |
| velo-PA | 1833 | CG10107-PA | 98..396 | 36..310 | 218 | 30.9 | Plus |
| ptip-PA | 2294 | CG32133-PA | 1418..1802 | 15..407 | 173 | 26.2 | Plus |
| velo-PC | 1833 | CG10107-PC | 32..390 | 100..449 | 172 | 25.7 | Plus |
| velo-PA | 1833 | CG10107-PA | 32..390 | 100..449 | 172 | 25.7 | Plus |
