Clone Sequence Records
BO17621.complete Sequence
3637 bp assembled on 2010-04-13
GenBank Submission: KX796704
> BO17621.complete
GAAGTTATCAGTCGACATGAGCTTCAGTTCGGCCAGCGGCAGGGAGAATA
ATGTCCGCAAATTATCCTTCCTGGGCTTCAATACCAAAAAGAAGTCTGGC
AATGAGGATCCCGACGAGGTGCTGCTGGACTCGGAAATGGACAAGGTCTT
TGCCGGCAACAGTGCGCGCAAGGACAAGTTCGATGTAAACACCTTCCAGG
ACAACTCCCAGCTGCCCATTGGATCCCGCAAGAAGAATAGCATCCGCACA
AACGATCTGAACATCGAGGAGGACTCGGAGTACGAGAGCCAAACGGAGCC
ATTGAATAATGCACAAAACTATGATGACATCCCCGAAGACTTCCCGCTAG
TCTCGGAGAGAGCCGGACACGGCGATCACTCGGACAACTCGGTGGACGAG
AAGCACGTCCAGTTTGGCGGCAAAAAGAAGATCCCGCCCAGTTTGAGCTA
TGATGAACAGCCCACGGACCAATCGCACGAACGTAAACGCAGAAGAAGCC
GCCATCAGTATTATAGACAACGTAAATTCTCACATCAGGACAGCGTGGAA
CCCAAAAACAAGCTCGAGGAAAACGGTGATGCAGGTGCGCGTCGCATCTC
TGTGCAGCCTGAGGACACGGCATTGGAGGAGGCTGATCTTAACGAGCTGA
GATCACATCGTTCGGACGACCCGCGTGCCCTGCGCCGCCATAAGATCCAT
CACTCATCCATCAAGTTGCGCGAGTTGCCCCAAATAACGATTTCCCCCTT
CACCAACAAGAAGCCCGAGGTGGATCATAGTCCTCATGAGATCTTTGTGC
AATTGGATGAGCTCACAGGCGTGGGCGAGGATCGCGAATGGAAGGAGACG
GCCCGTTGGATCAAGTATGAGGAGGACGTGGAGGAGGGCTCCGATCGTTG
GGGCAAGCCCCATGTTGCCTCCCTCTCCTTCCACTCGCTGCTCAATTTGC
GTCGCTGCCTGGAAACGGGCGTTGTCCTGCTCGATCTTAACGAGAAGGAC
CTGCCTGCCGTGGCCTATCGCGTGGTAGAACAGATGGTGATCGAGGACCT
GATTGACATCAATGACAAGCCATCGGTGATGCGTTCGCTGCTCCTGCGCC
ATCGCCATGTCAACGAACACCAAGGTGTGCTGCCCTTCACCAAGAGGAAG
TACAACAGCTACACCAGCCTGCAGAATTTGTCTGGCACGGATGACAAGAA
GATCAAGATTATGCCGGCCGCCGAAATTGGTGGCAGCAAGCGCAGCAATG
AGCTCAAGATCGACATGAAGGACGATATGTACTCCTCGTCACAGGAGGAT
CTCAAGAAGCTGCAGAATGACACGATCCTCAAGAGGATTCCAGCGGGTGC
TGAAGCCACCACAGTGCTGGTTGGTGCCGTAGAGTTCCTTGAGCAGCCTA
CCATTGCCTTTGTCCGTTTATCGGAGGGTGTCCTGATGCCCACATTGACC
GAGGTTCCTGTCCCAGTAAGATTCATGTTTGTTCTTTTGGGACCTCGTAA
CTTCGATTTGGACTACCATGAAGTGGGTCGTTCTATCTCCACGCTGATGG
CTAACGAGCATTTCCACTCCATTGCCTACAAAGCTGATGATCGCAAGGAT
CTGCTATCAGCCATCAATGAGTTCCTGGACGATTCTATCGTCCTGCCGCC
CGGTAATTGGGATCGCCACGATCTCTTGCCCTTCGAAGAGTTGAAGGCCA
AGAAGGATTGGATTCGCACGCGAAAGATTAAGGCACTGCAGGTGAAGCGA
GACAGTGAGATGATTAAGATTGGCAAGGATGAGGAGAAGGCATTGCTGGA
GAAGCAAACACTGGGAGCCATTGGATTCACGATTGGTGGAGGAGATGGTG
GTGGTGATGGCGACTCCGATGATGACAATGGCCGAAAGAAGAAGAAACCT
AGTCCGCTGGAGAAAACTGGACGTCTGTGGGGTGGTTTGAGGAACGATCT
TAAACGCAGAATGCCCATGTACAAGAGTGATATACTCGATGGCCTGAACA
CCGAAACCCTGGCTGCCACCATCTTTATGTACTTCGCTTGCCTCTCAACG
GCTATCACATTTGGAGGTCTCGTTTCCGCTAAGACAAACAGCTGGATTGG
TATCTCAGAGACTCTGATCTCGTGCTCCCTGGTGGGCATTGTTTTCCATT
GTCTGTCCTGCCAACCACTTGTGATCATTGGAACCACCGGACCACTGCTT
CTATTTGACGAAGCCCTCATGGTATTCTGTACGCAACATGAATTCGATTT
CTTGTCCCTAAGAGTTTACGTCGGAGTATGGTTAATAATAATAGCCCTAA
CTGTATCCGCCTTCGAGGGCAGTGTGTATGTTCGTCTGCTGACGAGATTC
ACTCAGGAGATATTCTCGGCTCTGATTACGCTCATCTATATTGTGGAAAC
ATTTATGAAACTGATTTCGATCTATAGGGAAAATCCCCTGCTATCTGACT
ACAATCTCCCTCCGCCGACATTGGTCGCCCACGAACATGCCACCAATGAA
AGCCTACTCAATGCGACGGCGAGTGTTACAACGAATATTACGCAGATGGT
AATGAACATTTCAACAACAGCCATGCCCATTGGTCCACCACCATTGCCCA
AGAATCAGCCGAACACCGCTTTATTCTGCACCATCCTCACATTGGCCACT
TTCGTGGTTGCCTACTACCTGAAGCTCTTCCGTAATTCCCACTTCTTGGG
TCGTAATGCTCGCCGTGCCCTCGGTGATTTCGGTGTACCAATCTCCATTG
CCATATTCGTGCTGGTGGACTACCTGGTGCCGGCTGTGTACACAGAGAAA
CTGGTGGTTCCGGAGGGTCTGTCGCCCAGCGATCCCTCTAAGCGCGGCTG
GTACATCGGTTTCGATACCTCTTCCACGTGGATACCATTTGCTTGTGTGA
TACCTGCCCTGCTCGTCTACATTCTTATCTTTATGGAGTCACAGATCTCC
GAGCTGATTGTGGACAAGCCTGATCGTGGCTTAAAGAAGGGTTCTGGTCT
CCACTGGGATATTGTGCTGCTTTGCCTGCTCAACTGCGCTTGCGGAATAT
TTGGAATGCCCTGGCATTGCGCCGCCACTGTAAGATCGGTGACTCATGTG
TCATCCGTCACCATTATGTCACGCACCCACGCTCCTGGTGAATCGCCCAG
GATCGTTGATGTTAAGGAGCAGCGCTTGTCCGGATTCTTTGTGTGTCTGA
TGATTGGACTATCGGTGCTGATGGCTCCGCTTCTTCGGTTGATACCCATG
GCCGTGCTCTTTGGAGTCTTCTTGTACATGGGAGTGGCCTCCATGAGCGG
AGTGCAGTTGTTCGAAAGAATAAGACTGTATTTCATGCCGGTCAAACATT
ATCCACCCACATCATACGTGAAGCGATTGCGTCCTTGGAAGCTGCATTTG
TTTACCACCATTCAGGTGCTGTGCCTGGTACTCCTCTGGAGTGTGAAGTC
GTCCCAATTCTCGCTGGCCTTCCCCTTCTTCCTGATCATGATGGTGCCGA
TACGGCAAAATTTGACAAAATTGTATAAGCCAGAGGAAATGCAAGCGTTG
GATGGCAGCGAGATGAAGAAGAACGACGACGACGAGCCCGATTTCTATGA
ACAAACCAACATACCAGCAGCAAGCTTTCTAGACCAT
BO17621.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:12:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8177-RH | 3606 | CG8177-PH | 1..3603 | 17..3619 | 18015 | 100 | Plus |
| CG8177-RB | 3606 | CG8177-PB | 1..3603 | 17..3619 | 18015 | 100 | Plus |
| CG8177-RF | 3606 | CG8177-PF | 1..3603 | 17..3619 | 18015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8177-RH | 4869 | CG8177-RH | 344..3946 | 17..3619 | 18015 | 100 | Plus |
| CG8177-RB | 5173 | CG8177-RB | 418..4020 | 17..3619 | 18015 | 100 | Plus |
| CG8177-RF | 4515 | CG8177-RF | 838..4440 | 17..3619 | 18015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9782873..9784627 | 1369..3123 | 8775 | 100 | Plus |
| 3L | 28110227 | 3L | 9779652..9779907 | 243..498 | 1280 | 100 | Plus |
| 3L | 28110227 | 3L | 9780764..9781008 | 789..1033 | 1225 | 100 | Plus |
| 3L | 28110227 | 3L | 9784950..9785180 | 3317..3547 | 1155 | 100 | Plus |
| 3L | 28110227 | 3L | 9782606..9782805 | 1172..1371 | 1000 | 100 | Plus |
| 3L | 28110227 | 3L | 9784696..9784891 | 3123..3318 | 980 | 100 | Plus |
| 3L | 28110227 | 3L | 9780534..9780697 | 627..790 | 820 | 100 | Plus |
| 3L | 28110227 | 3L | 9779444..9779593 | 93..242 | 750 | 100 | Plus |
| 3L | 28110227 | 3L | 9781075..9781218 | 1031..1174 | 720 | 100 | Plus |
| 3L | 28110227 | 3L | 9780121..9780253 | 497..629 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 9771842..9771919 | 17..94 | 390 | 100 | Plus |
| 3L | 28110227 | 3L | 9785241..9785313 | 3547..3619 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:12:41 has no hits.
BO17621.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:25 Download gff for
BO17621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8177-RF | 830..4432 | 17..3621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:53 Download gff for
BO17621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8177-RF | 838..4440 | 17..3621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:49 Download gff for
BO17621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8177-RF | 838..4440 | 17..3621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:49 Download gff for
BO17621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9785242..9785313 | 3548..3621 | 97 | | Plus |
| 3L | 9782609..9782803 | 1175..1369 | 100 | -> | Plus |
| 3L | 9771842..9771919 | 17..94 | 100 | -> | Plus |
| 3L | 9779446..9779593 | 95..242 | 100 | -> | Plus |
| 3L | 9779652..9779907 | 243..498 | 100 | -> | Plus |
| 3L | 9780123..9780252 | 499..628 | 100 | -> | Plus |
| 3L | 9780536..9780697 | 629..790 | 100 | -> | Plus |
| 3L | 9780766..9781008 | 791..1033 | 100 | -> | Plus |
| 3L | 9781078..9781218 | 1034..1174 | 100 | -> | Plus |
| 3L | 9782874..9784627 | 1370..3123 | 100 | -> | Plus |
| 3L | 9784697..9784891 | 3124..3318 | 100 | -> | Plus |
| 3L | 9784952..9785180 | 3319..3547 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:53 Download gff for
BO17621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9764942..9765019 | 17..94 | 100 | -> | Plus |
| arm_3L | 9772546..9772693 | 95..242 | 100 | -> | Plus |
| arm_3L | 9772752..9773007 | 243..498 | 100 | -> | Plus |
| arm_3L | 9773223..9773352 | 499..628 | 100 | -> | Plus |
| arm_3L | 9773636..9773797 | 629..790 | 100 | -> | Plus |
| arm_3L | 9773866..9774108 | 791..1033 | 100 | -> | Plus |
| arm_3L | 9774178..9774318 | 1034..1174 | 100 | -> | Plus |
| arm_3L | 9775709..9775903 | 1175..1369 | 100 | -> | Plus |
| arm_3L | 9775974..9777727 | 1370..3123 | 100 | -> | Plus |
| arm_3L | 9777797..9777991 | 3124..3318 | 100 | -> | Plus |
| arm_3L | 9778052..9778280 | 3319..3547 | 100 | -> | Plus |
| arm_3L | 9778342..9778413 | 3548..3621 | 97 | | Plus |
BO17621.3prime Sequence
796 bp (724 high quality bases) assembled on 2006-10-13
> BO17621.3prime
ATGGTCTAGAAAGCTTGCTGCTGGTATGTTGGTTTGTTCATAGAAATCGG
GCTCGTCGTCGTCGTTCTTCTTCATCTCGCTGCCATCCAACGCTTGCATT
TCCTCTGGCTTATACAATTTTGTCAAATTTTGCCGTATCGGCACCATCAT
GATCAGGAAGAAGGGGAAGGCCAGCGAGAATTGGGACGACTTCACACTCC
AGAGGAGTACCAGGCACAGCACCTGAATGGTGGTAAACAAATGCAGCTTC
CAAGGACGCAATCGCTTCACGTATGATGTGGGTGGATAATGTTTGACCGG
CATGAAATACAGTCTTATTCTTTCGAACAACTGCACTCCGCTCATGGAGG
CCACTCCCATGTACAAGAAGACTCCAAAGAGCACGGCCATGGGTATCAAC
CGAAGAAGCGGAGCCATCAGCACCGATAGTCCAATCATCAGACACACAAA
GAATCCGGACAAGCGCTGCTCCTTAACATCAACGATCCTGGGCGATTCAC
CAGGAGCGTGGGTGCGTGACATAATGGTGACGGATGACACATGAGTCACC
GATCTTACAGTGGCGGCGCAATGCCAGGGCATTCCAAATATTCCGCAAGC
GCAGTTGAGCAGGCAAAGCAGCACAATATCCCAGTGGAGACCAGAACCCT
TCTTTAAGCCACGATCAGGCTTGTCCACAATCAGCTCGGAGATCTGTGAC
TCCATAAAGATAAGAATGTAGACGAGCAAGGCAGGTATCACACAAGCAAA
TGGTATCCACGTGGAAAAGGTATCGAAACCGATGTACCAGCCGCGC
BO17621.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:56:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8177-PI | 3606 | CG8177-RI | 2826..3603 | 796..19 | 3840 | 99.7 | Minus |
| CG8177-PJ | 3501 | CG8177-RJ | 2721..3498 | 796..19 | 3840 | 99.7 | Minus |
| CG8177-PK | 3702 | CG8177-RK | 2922..3699 | 796..19 | 3840 | 99.7 | Minus |
| CG8177-PC | 3606 | CG8177-RC | 2826..3603 | 796..19 | 3840 | 99.7 | Minus |
| CG8177-PF | 3606 | CG8177-RF | 2826..3603 | 796..19 | 3840 | 99.7 | Minus |
| CG8177-PG | 3807 | CG8177-RG | 3027..3804 | 796..19 | 3840 | 99.7 | Minus |
| CG8177-PB | 3606 | CG8177-RB | 2826..3603 | 796..19 | 3840 | 99.7 | Minus |
| CG8177-PA | 3807 | CG8177-RA | 3027..3804 | 796..19 | 3840 | 99.7 | Minus |
| CG8177-PD | 3486 | CG8177-RD | 2706..3483 | 796..19 | 3840 | 99.7 | Minus |
| CG8177-PE | 3687 | CG8177-RE | 2907..3684 | 796..19 | 3840 | 99.7 | Minus |
| CG8177-PH | 3606 | CG8177-RH | 2826..3603 | 796..19 | 3840 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:00:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8177-RM | 5620 | CG8177-RM | 3690..4467 | 796..19 | 3860 | 99.7 | Minus |
| CG8177-RH | 4869 | CG8177-RH | 3169..3946 | 796..19 | 3860 | 99.7 | Minus |
| CG8177-RE | 5099 | CG8177-RE | 3169..3946 | 796..19 | 3860 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:00:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9784346..9784627 | 796..515 | 1380 | 99.3 | Minus |
| 3L | 28110227 | 3L | 9784950..9785180 | 321..91 | 1155 | 100 | Minus |
| 3L | 28110227 | 3L | 9784696..9784891 | 515..320 | 980 | 100 | Minus |
| 3L | 28110227 | 3L | 9785241..9785313 | 91..19 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:00:19 has no hits.
BO17621.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:52 Download gff for
BO17621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8177-PH | 2826..3606 | 18..796 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:06:14 Download gff for
BO17621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8177-RE | 3169..3953 | 11..796 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:26:27 Download gff for
BO17621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8177-RE | 3169..3953 | 11..796 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:26:27 Download gff for
BO17621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9784346..9784627 | 515..796 | 99 | -> | Minus |
| 3L | 9784697..9784891 | 320..514 | 100 | -> | Minus |
| 3L | 9784952..9785180 | 91..319 | 100 | -> | Minus |
| 3L | 9785242..9785320 | 11..90 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:06:14 Download gff for
BO17621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9777446..9777727 | 515..796 | 99 | -> | Minus |
| arm_3L | 9777797..9777991 | 320..514 | 100 | -> | Minus |
| arm_3L | 9778052..9778280 | 91..319 | 100 | -> | Minus |
| arm_3L | 9778342..9778420 | 11..90 | 95 | | Minus |
BO17621.5prime Sequence
816 bp (757 high quality bases) assembled on 2006-10-13
> BO17621.5prime
GAAGTTATCAGTCGACATGAGCTTCAGTTCGGCCAGCGGCAGGGAGAATA
ATGTCCGCAAATTATCCTTCCTGGGCTTCAATACCAAAAAGAAGTCTGGC
AATGAGGATCCCGACGAGGTGCTGCTGGACTCGGAAATGGACAAGGTCTT
TGCCGGCAACAGTGCGCGCAAGGACAAGTTCGATGTAAACACCTTCCAGG
ACAACTCCCAGCTGCCCATTGGATCCCGCAAGAAGAATAGCATCCGCACA
AACGATCTGAACATCGAGGAGGACTCGGAGTACGAGAGCCAAACGGAGCC
ATTGAATAATGCACAAAACTATGATGACATCCCCGAAGACTTCCCGCTAG
TCTCGGAGAGAGCCGGACACGGCGATCACTCGGACAACTCGGTGGACGAG
AAGCACGTCCAGTTTGGCGGCAAAAAGAAGATCCCGCCCAGTTTGAGCTA
TGATGAACAGCCCACGGACCAATCGCACGAACGTAAACGCAGAAGAAGCC
GCCATCAGTATTATAGACAACGTAAATTCTCACATCAGGACAGCGTGGAA
CCCAAAAACAAGCTCGAGGAAAACGGTGATGCAGGTGCGCGTCGCATCTC
TGTGCAGCCTGAGGACACGGCATTGGAGGAGGCTGATCTTAACGAGCTGA
GATCACATCGTTCGGACGACCCGCGTGCCCTGCGCCGCCATAAGATCCAT
CACTCATCCATCAAGTTGCGCGAGTTGCCCCAAATAACGATTTCCCCCTT
CACCAACAAGAAGCCCGAGGTGGATCATAGTCCTCATGAGATCTTTTGTG
CATTGGATGAGCTCAC
BO17621.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:56:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8177-PI | 3606 | CG8177-RI | 1..800 | 17..816 | 3925 | 99.7 | Plus |
| CG8177-PC | 3606 | CG8177-RC | 1..800 | 17..816 | 3925 | 99.7 | Plus |
| CG8177-PF | 3606 | CG8177-RF | 1..800 | 17..816 | 3925 | 99.7 | Plus |
| CG8177-PG | 3807 | CG8177-RG | 1..800 | 17..816 | 3925 | 99.7 | Plus |
| CG8177-PB | 3606 | CG8177-RB | 1..800 | 17..816 | 3925 | 99.7 | Plus |
| CG8177-PA | 3807 | CG8177-RA | 1..800 | 17..816 | 3925 | 99.7 | Plus |
| CG8177-PH | 3606 | CG8177-RH | 1..800 | 17..816 | 3925 | 99.7 | Plus |
| CG8177-PD | 3486 | CG8177-RD | 1..680 | 137..816 | 3325 | 99.7 | Plus |
| CG8177-PE | 3687 | CG8177-RE | 1..680 | 137..816 | 3325 | 99.7 | Plus |
| CG8177-PJ | 3501 | CG8177-RJ | 77..695 | 198..816 | 3020 | 99.6 | Plus |
| CG8177-PK | 3702 | CG8177-RK | 77..695 | 198..816 | 3020 | 99.6 | Plus |
| CG8177-PJ | 3501 | CG8177-RJ | 1..78 | 17..94 | 390 | 100 | Plus |
| CG8177-PK | 3702 | CG8177-RK | 1..78 | 17..94 | 390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8177-RH | 4869 | CG8177-RH | 344..1143 | 17..816 | 3955 | 99.8 | Plus |
| CG8177-RA | 5144 | CG8177-RA | 418..1217 | 17..816 | 3955 | 99.8 | Plus |
| CG8177-RB | 5173 | CG8177-RB | 418..1217 | 17..816 | 3955 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9779652..9779907 | 243..498 | 1280 | 100 | Plus |
| 3L | 28110227 | 3L | 9780534..9780697 | 627..790 | 820 | 100 | Plus |
| 3L | 28110227 | 3L | 9779444..9779593 | 93..242 | 750 | 100 | Plus |
| 3L | 28110227 | 3L | 9780121..9780253 | 497..629 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 9771842..9771919 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:37:03 has no hits.
BO17621.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:54 Download gff for
BO17621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8177-PB | 1..800 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:23:33 Download gff for
BO17621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8177-RB | 410..1217 | 9..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:02 Download gff for
BO17621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8177-RB | 410..1217 | 9..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:02 Download gff for
BO17621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9779446..9779593 | 95..242 | 100 | -> | Plus |
| 3L | 9779652..9779907 | 243..498 | 100 | -> | Plus |
| 3L | 9780123..9780252 | 499..628 | 100 | -> | Plus |
| 3L | 9780536..9780697 | 629..790 | 100 | -> | Plus |
| 3L | 9780766..9780791 | 791..816 | 92 | | Plus |
| 3L | 9771834..9771919 | 9..94 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:23:33 Download gff for
BO17621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9764934..9765019 | 9..94 | 96 | -> | Plus |
| arm_3L | 9772546..9772693 | 95..242 | 100 | -> | Plus |
| arm_3L | 9772752..9773007 | 243..498 | 100 | -> | Plus |
| arm_3L | 9773223..9773352 | 499..628 | 100 | -> | Plus |
| arm_3L | 9773636..9773797 | 629..790 | 100 | -> | Plus |
| arm_3L | 9773866..9773891 | 791..816 | 92 | | Plus |
BO17621.pep Sequence
Translation from 16 to 3637
> BO17621.pep
MSFSSASGRENNVRKLSFLGFNTKKKSGNEDPDEVLLDSEMDKVFAGNSA
RKDKFDVNTFQDNSQLPIGSRKKNSIRTNDLNIEEDSEYESQTEPLNNAQ
NYDDIPEDFPLVSERAGHGDHSDNSVDEKHVQFGGKKKIPPSLSYDEQPT
DQSHERKRRRSRHQYYRQRKFSHQDSVEPKNKLEENGDAGARRISVQPED
TALEEADLNELRSHRSDDPRALRRHKIHHSSIKLRELPQITISPFTNKKP
EVDHSPHEIFVQLDELTGVGEDREWKETARWIKYEEDVEEGSDRWGKPHV
ASLSFHSLLNLRRCLETGVVLLDLNEKDLPAVAYRVVEQMVIEDLIDIND
KPSVMRSLLLRHRHVNEHQGVLPFTKRKYNSYTSLQNLSGTDDKKIKIMP
AAEIGGSKRSNELKIDMKDDMYSSSQEDLKKLQNDTILKRIPAGAEATTV
LVGAVEFLEQPTIAFVRLSEGVLMPTLTEVPVPVRFMFVLLGPRNFDLDY
HEVGRSISTLMANEHFHSIAYKADDRKDLLSAINEFLDDSIVLPPGNWDR
HDLLPFEELKAKKDWIRTRKIKALQVKRDSEMIKIGKDEEKALLEKQTLG
AIGFTIGGGDGGGDGDSDDDNGRKKKKPSPLEKTGRLWGGLRNDLKRRMP
MYKSDILDGLNTETLAATIFMYFACLSTAITFGGLVSAKTNSWIGISETL
ISCSLVGIVFHCLSCQPLVIIGTTGPLLLFDEALMVFCTQHEFDFLSLRV
YVGVWLIIIALTVSAFEGSVYVRLLTRFTQEIFSALITLIYIVETFMKLI
SIYRENPLLSDYNLPPPTLVAHEHATNESLLNATASVTTNITQMVMNIST
TAMPIGPPPLPKNQPNTALFCTILTLATFVVAYYLKLFRNSHFLGRNARR
ALGDFGVPISIAIFVLVDYLVPAVYTEKLVVPEGLSPSDPSKRGWYIGFD
TSSTWIPFACVIPALLVYILIFMESQISELIVDKPDRGLKKGSGLHWDIV
LLCLLNCACGIFGMPWHCAATVRSVTHVSSVTIMSRTHAPGESPRIVDVK
EQRLSGFFVCLMIGLSVLMAPLLRLIPMAVLFGVFLYMGVASMSGVQLFE
RIRLYFMPVKHYPPTSYVKRLRPWKLHLFTTIQVLCLVLLWSVKSSQFSL
AFPFFLIMMVPIRQNLTKLYKPEEMQALDGSEMKKNDDDEPDFYEQTNIP
AASFLDH
BO17621.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:16:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8177-PH | 1201 | CG8177-PH | 1..1201 | 1..1201 | 6237 | 100 | Plus |
| CG8177-PB | 1201 | CG8177-PB | 1..1201 | 1..1201 | 6237 | 100 | Plus |
| CG8177-PF | 1201 | CG8177-PF | 1..1201 | 1..1201 | 6237 | 100 | Plus |
| CG8177-PC | 1201 | CG8177-PC | 1..1201 | 1..1201 | 6237 | 100 | Plus |
| CG8177-PI | 1201 | CG8177-PI | 1..1201 | 1..1201 | 6237 | 100 | Plus |
