Clone Sequence Records
BO17633.3prime Sequence
811 bp (714 high quality bases) assembled on 2006-10-13
> BO17633.3prime
ATGGTCTAGAAAGCTTGCTTCGTAAAAGTGCTTCTGCACCCATCGAGGCA
AGGCAAAGGCGGCGGAGTGAACCTCGGAGGAGTAGTACCTTAGGTCTATA
GAATCGATTTCGGACTTTCCAAGCTTGGGAGTAGCGAAGTCCTGGTTTTT
GTTCAGGGAGCCCATGACGAAGCCAATGTGGCCGCAGGGATAGGACGGAA
CGGAGGTGACGGCATAGGCCACCTTAGCAAAGTGCTCCTTGCAGCCGGAC
ATGGTCTTCTTGATGTAGTCCAGGTCCAGCCAGAAGCTACCGCCCTGGGA
GCACACGATTCCGTCATCCTTCAGCGCGTGTTTCATTAGCTCGTAGTAGC
TTTCCTGAAACAGGCTCACTGCCGGACCAATGGGATCCGAGCTGTCGGTG
ATGATGACATCAAATTCGTTCTTGTGTTTCTTCATATAGTCGAATCCATC
GCCAATGGTAAGCTTCAACTTCTCGTTGGCGAAACCACAGGCCATCGCTG
GGAGATATTGCTTGGACAGCTCGACGACACGGTCGTCGATTTCCACCTGA
TGCACTTCCTCGACCAGTGGATGCTTTACCACCTCGCGAGCAACGCCGCC
ATCGCCACCGCCCACGATCAGGACCTTTTTGGGATTGGGATGGGCGCAGA
GCGGCAGGAAAGATATCATCTCCTGGTACGAGAACTCATCCCTGGCCGTG
CACTGAATGATTCCGTCCAGAATTANGCACCGTCCATAGGTTTCGGGTTC
AACGATCTGGATGTCTTGGAACCGGGACTTCTCCTTGTGGATGACCTCCT
TGACTTTCAGG
BO17633.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8327-PA | 864 | SpdS-RA | 69..861 | 811..19 | 3921 | 99.7 | Minus |
CG8327-PB | 654 | SpdS-RB | 1..651 | 669..19 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-RC | 995 | CG8327-RC | 119..911 | 811..19 | 3939 | 99.7 | Minus |
SpdS-RA | 1511 | CG8327-RA | 149..941 | 811..19 | 3939 | 99.7 | Minus |
SpdS-RB | 1189 | CG8327-RB | 379..1105 | 745..19 | 3624 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9632377..9633103 | 745..19 | 3624 | 99.9 | Minus |
3R | 32079331 | 3R | 9631789..9631852 | 811..748 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:40:53 has no hits.
BO17633.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:57 Download gff for
BO17633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8327-PA | 69..864 | 16..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:27:24 Download gff for
BO17633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 149..951 | 11..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:33 Download gff for
BO17633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 149..951 | 11..811 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:33 Download gff for
BO17633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9631789..9631854 | 746..811 | 98 | -> | Minus |
3R | 9632377..9633113 | 11..745 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:27:24 Download gff for
BO17633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5457511..5457576 | 746..811 | 98 | -> | Minus |
arm_3R | 5458099..5458835 | 11..745 | 99 | | Minus |
BO17633.5prime Sequence
735 bp (709 high quality bases) assembled on 2006-10-13
> BO17633.5prime
GAAGTTATCAGTCGACATGGATTCCCTTAACAACGGATGGTTCAGCGAAC
TGCAGGCCGATCTCTGGCCCGGTCAGTCATTCTCCCTGAAAGTCAAGGAG
GTCATCCACAAGGAGAAGTCCCGGTTCCAAGACATCCAGATCGTTGAAAC
CGAAACCTATGGACGGTGCCTAATTCTGGACGGAATCATTCAGTGCACGG
CCAGGGATGAGTTCTCGTACCAGGAGATGATATCTTTCCTGCCGCTCTGC
GCCCATCCCAATCCCAAAAAGGTCCTGATCGTGGGCGGTGGCGATGGCGG
CGTTGCTCGCGAGGTGGTAAAGCATCCACTGGTCGAGGAAGTGCATCAGG
TGGAAATCGACGACCGTGTCGTCGAGCTGTCCAAGCAATATCTCCCAGCG
ATGGCCTGTGGTTTCGCCAACGAGAAGTTGAAGCTTACCATTGGCGATGG
ATTCGACTATATGAAGAAACACAAGAACGAATTTGATGTCATCATCACCG
ACAGCTCGGATCCCATTGGTCCGGCAGTGAGCCTGTTTCAGGAAAGCTAC
TACGAGCTAATGAAACACGCGCTGAAGGATGACGGAATCGTGTGCTCCCA
GGGCGGTAGCTTCTGGCTGGACCTGGACTACATCAAGAAGACCATGTCCG
GCTGCAAGGAGCACTTTGCTAAGGTGGCCTATGCCGTCACCTCCGTTCCG
TCCTATCCCTGCGGCCACATTGGCTTCGTCATGGG
BO17633.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8327-PA | 864 | SpdS-RA | 1..719 | 17..735 | 3595 | 100 | Plus |
CG8327-PB | 654 | SpdS-RB | 1..509 | 227..735 | 2545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-RC | 995 | CG8327-RC | 51..769 | 17..735 | 3595 | 100 | Plus |
SpdS-RA | 1511 | CG8327-RA | 81..799 | 17..735 | 3595 | 100 | Plus |
SpdS-RB | 1189 | CG8327-RB | 379..963 | 151..735 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9632377..9632961 | 151..735 | 2925 | 100 | Plus |
3R | 32079331 | 3R | 9631721..9631854 | 17..150 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:41:27 has no hits.
BO17633.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:59 Download gff for
BO17633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8327-PA | 1..719 | 17..735 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:44:15 Download gff for
BO17633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 81..799 | 17..735 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:22 Download gff for
BO17633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 81..799 | 17..735 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:22 Download gff for
BO17633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9631721..9631854 | 17..150 | 100 | -> | Plus |
3R | 9632377..9632961 | 151..735 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:44:15 Download gff for
BO17633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5457443..5457576 | 17..150 | 100 | -> | Plus |
arm_3R | 5458099..5458683 | 151..735 | 100 | | Plus |
BO17633.complete Sequence
895 bp assembled on 2006-10-11
GenBank Submission: FJ634184
> BO17633.complete
GAAGTTATCAGTCGACATGGATTCCCTTAACAACGGATGGTTCAGCGAAC
TGCAGGCCGATCTCTGGCCCGGTCAGTCATTCTCCCTGAAAGTCAAGGAG
GTCATCCACAAGGAGAAGTCCCGGTTCCAAGACATCCAGATCGTTGAAAC
CGAAACCTATGGACGGTGCCTAATTCTGGACGGAATCATTCAGTGCACGG
CCAGGGATGAGTTCTCGTACCAGGAGATGATATCTTTCCTGCCGCTCTGC
GCCCATCCCAATCCCAAAAAGGTCCTGATCGTGGGCGGTGGCGATGGCGG
CGTTGCTCGCGAGGTGGTAAAGCATCCACTGGTCGAGGAAGTGCATCAGG
TGGAAATCGACGACCGTGTCGTCGAGCTGTCCAAGCAATATCTCCCAGCG
ATGGCCTGTGGTTTCGCCAACGAGAAGTTGAAGCTTACCATTGGCGATGG
ATTCGACTATATGAAGAAACACAAGAACGAATTTGATGTCATCATCACCG
ACAGCTCGGATCCCATTGGTCCGGCAGTGAGCCTGTTTCAGGAAAGCTAC
TACGAGCTAATGAAACACGCGCTGAAGGATGACGGAATCGTGTGCTCCCA
GGGCGGTAGCTTCTGGCTGGACCTGGACTACATCAAGAAGACCATGTCCG
GCTGCAAGGAGCACTTTGCTAAGGTGGCCTATGCCGTCACCTCCGTTCCG
TCCTATCCCTGCGGCCACATTGGCTTCGTCATGGGCTCCCTGAACAAAAA
CCAGGACTTCGCTACTCCCAAGCTTGGAAAGTCCGAAATCGATTCTATAG
ACCTAAGGTACTACTCCTCCGAGGTTCACTCCGCCGCCTTTGCCTTGCCT
CGATGGGTGCAGAAGCACTTTTACGAAGCAAGCTTTCTAGACCAT
BO17633.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-RC | 864 | CG8327-PC | 1..861 | 17..877 | 4305 | 100 | Plus |
SpdS-RA | 864 | CG8327-PA | 1..861 | 17..877 | 4305 | 100 | Plus |
SpdS-RB | 654 | CG8327-PB | 1..651 | 227..877 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-RC | 995 | CG8327-RC | 51..911 | 17..877 | 4305 | 100 | Plus |
SpdS-RA | 1511 | CG8327-RA | 81..941 | 17..877 | 4305 | 100 | Plus |
SpdS-RB | 1189 | CG8327-RB | 379..1105 | 151..877 | 3635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9632377..9633103 | 151..877 | 3635 | 100 | Plus |
3R | 32079331 | 3R | 9631721..9631854 | 17..150 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:02:09 has no hits.
BO17633.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:56 Download gff for
BO17633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:39 Download gff for
BO17633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 63..933 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:10 Download gff for
BO17633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 81..941 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:56 Download gff for
BO17633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 63..933 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:12 Download gff for
BO17633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 81..941 | 17..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:12 Download gff for
BO17633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9631721..9631854 | 17..150 | 100 | -> | Plus |
3R | 9632377..9633103 | 151..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:10 Download gff for
BO17633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5457443..5457576 | 17..150 | 100 | -> | Plus |
arm_3R | 5458099..5458825 | 151..879 | 99 | | Plus |
BO17633.pep Sequence
Translation from 16 to 895
> BO17633.pep
MDSLNNGWFSELQADLWPGQSFSLKVKEVIHKEKSRFQDIQIVETETYGR
CLILDGIIQCTARDEFSYQEMISFLPLCAHPNPKKVLIVGGGDGGVAREV
VKHPLVEEVHQVEIDDRVVELSKQYLPAMACGFANEKLKLTIGDGFDYMK
KHKNEFDVIITDSSDPIGPAVSLFQESYYELMKHALKDDGIVCSQGGSFW
LDLDYIKKTMSGCKEHFAKVAYAVTSVPSYPCGHIGFVMGSLNKNQDFAT
PKLGKSEIDSIDLRYYSSEVHSAAFALPRWVQKHFYEASFLDH
BO17633.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-PC | 287 | CG8327-PC | 1..287 | 1..287 | 1526 | 100 | Plus |
SpdS-PA | 287 | CG8327-PA | 1..287 | 1..287 | 1526 | 100 | Plus |
SpdS-PB | 217 | CG8327-PB | 1..217 | 71..287 | 1155 | 100 | Plus |
CG4300-PB | 366 | CG4300-PB | 140..319 | 26..196 | 156 | 30.4 | Plus |
CG4300-PA | 367 | CG4300-PA | 141..320 | 26..196 | 156 | 30.4 | Plus |