Clone BO17633 Report

Search the DGRC for BO17633

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:176
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptSpdS-RA
Protein status:BO17633.pep: validated full length
Sequenced Size:895

Clone Sequence Records

BO17633.3prime Sequence

811 bp (714 high quality bases) assembled on 2006-10-13

> BO17633.3prime
ATGGTCTAGAAAGCTTGCTTCGTAAAAGTGCTTCTGCACCCATCGAGGCA
AGGCAAAGGCGGCGGAGTGAACCTCGGAGGAGTAGTACCTTAGGTCTATA
GAATCGATTTCGGACTTTCCAAGCTTGGGAGTAGCGAAGTCCTGGTTTTT
GTTCAGGGAGCCCATGACGAAGCCAATGTGGCCGCAGGGATAGGACGGAA
CGGAGGTGACGGCATAGGCCACCTTAGCAAAGTGCTCCTTGCAGCCGGAC
ATGGTCTTCTTGATGTAGTCCAGGTCCAGCCAGAAGCTACCGCCCTGGGA
GCACACGATTCCGTCATCCTTCAGCGCGTGTTTCATTAGCTCGTAGTAGC
TTTCCTGAAACAGGCTCACTGCCGGACCAATGGGATCCGAGCTGTCGGTG
ATGATGACATCAAATTCGTTCTTGTGTTTCTTCATATAGTCGAATCCATC
GCCAATGGTAAGCTTCAACTTCTCGTTGGCGAAACCACAGGCCATCGCTG
GGAGATATTGCTTGGACAGCTCGACGACACGGTCGTCGATTTCCACCTGA
TGCACTTCCTCGACCAGTGGATGCTTTACCACCTCGCGAGCAACGCCGCC
ATCGCCACCGCCCACGATCAGGACCTTTTTGGGATTGGGATGGGCGCAGA
GCGGCAGGAAAGATATCATCTCCTGGTACGAGAACTCATCCCTGGCCGTG
CACTGAATGATTCCGTCCAGAATTANGCACCGTCCATAGGTTTCGGGTTC
AACGATCTGGATGTCTTGGAACCGGGACTTCTCCTTGTGGATGACCTCCT
TGACTTTCAGG

BO17633.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8327-PA 864 SpdS-RA 69..861 811..19 3921 99.7 Minus
CG8327-PB 654 SpdS-RB 1..651 669..19 3255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-RC 995 CG8327-RC 119..911 811..19 3939 99.7 Minus
SpdS-RA 1511 CG8327-RA 149..941 811..19 3939 99.7 Minus
SpdS-RB 1189 CG8327-RB 379..1105 745..19 3624 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9632377..9633103 745..19 3624 99.9 Minus
3R 32079331 3R 9631789..9631852 811..748 320 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:40:53 has no hits.

BO17633.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:57 Download gff for BO17633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8327-PA 69..864 16..811 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:27:24 Download gff for BO17633.3prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 149..951 11..811 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:33 Download gff for BO17633.3prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 149..951 11..811 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:33 Download gff for BO17633.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9631789..9631854 746..811 98 -> Minus
3R 9632377..9633113 11..745 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:27:24 Download gff for BO17633.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5457511..5457576 746..811 98 -> Minus
arm_3R 5458099..5458835 11..745 99   Minus

BO17633.5prime Sequence

735 bp (709 high quality bases) assembled on 2006-10-13

> BO17633.5prime
GAAGTTATCAGTCGACATGGATTCCCTTAACAACGGATGGTTCAGCGAAC
TGCAGGCCGATCTCTGGCCCGGTCAGTCATTCTCCCTGAAAGTCAAGGAG
GTCATCCACAAGGAGAAGTCCCGGTTCCAAGACATCCAGATCGTTGAAAC
CGAAACCTATGGACGGTGCCTAATTCTGGACGGAATCATTCAGTGCACGG
CCAGGGATGAGTTCTCGTACCAGGAGATGATATCTTTCCTGCCGCTCTGC
GCCCATCCCAATCCCAAAAAGGTCCTGATCGTGGGCGGTGGCGATGGCGG
CGTTGCTCGCGAGGTGGTAAAGCATCCACTGGTCGAGGAAGTGCATCAGG
TGGAAATCGACGACCGTGTCGTCGAGCTGTCCAAGCAATATCTCCCAGCG
ATGGCCTGTGGTTTCGCCAACGAGAAGTTGAAGCTTACCATTGGCGATGG
ATTCGACTATATGAAGAAACACAAGAACGAATTTGATGTCATCATCACCG
ACAGCTCGGATCCCATTGGTCCGGCAGTGAGCCTGTTTCAGGAAAGCTAC
TACGAGCTAATGAAACACGCGCTGAAGGATGACGGAATCGTGTGCTCCCA
GGGCGGTAGCTTCTGGCTGGACCTGGACTACATCAAGAAGACCATGTCCG
GCTGCAAGGAGCACTTTGCTAAGGTGGCCTATGCCGTCACCTCCGTTCCG
TCCTATCCCTGCGGCCACATTGGCTTCGTCATGGG

BO17633.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8327-PA 864 SpdS-RA 1..719 17..735 3595 100 Plus
CG8327-PB 654 SpdS-RB 1..509 227..735 2545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-RC 995 CG8327-RC 51..769 17..735 3595 100 Plus
SpdS-RA 1511 CG8327-RA 81..799 17..735 3595 100 Plus
SpdS-RB 1189 CG8327-RB 379..963 151..735 2925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9632377..9632961 151..735 2925 100 Plus
3R 32079331 3R 9631721..9631854 17..150 670 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:41:27 has no hits.

BO17633.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:10:59 Download gff for BO17633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8327-PA 1..719 17..735 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:44:15 Download gff for BO17633.5prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 81..799 17..735 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:22 Download gff for BO17633.5prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 81..799 17..735 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:22 Download gff for BO17633.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9631721..9631854 17..150 100 -> Plus
3R 9632377..9632961 151..735 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:44:15 Download gff for BO17633.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5457443..5457576 17..150 100 -> Plus
arm_3R 5458099..5458683 151..735 100   Plus

BO17633.complete Sequence

895 bp assembled on 2006-10-11

GenBank Submission: FJ634184

> BO17633.complete
GAAGTTATCAGTCGACATGGATTCCCTTAACAACGGATGGTTCAGCGAAC
TGCAGGCCGATCTCTGGCCCGGTCAGTCATTCTCCCTGAAAGTCAAGGAG
GTCATCCACAAGGAGAAGTCCCGGTTCCAAGACATCCAGATCGTTGAAAC
CGAAACCTATGGACGGTGCCTAATTCTGGACGGAATCATTCAGTGCACGG
CCAGGGATGAGTTCTCGTACCAGGAGATGATATCTTTCCTGCCGCTCTGC
GCCCATCCCAATCCCAAAAAGGTCCTGATCGTGGGCGGTGGCGATGGCGG
CGTTGCTCGCGAGGTGGTAAAGCATCCACTGGTCGAGGAAGTGCATCAGG
TGGAAATCGACGACCGTGTCGTCGAGCTGTCCAAGCAATATCTCCCAGCG
ATGGCCTGTGGTTTCGCCAACGAGAAGTTGAAGCTTACCATTGGCGATGG
ATTCGACTATATGAAGAAACACAAGAACGAATTTGATGTCATCATCACCG
ACAGCTCGGATCCCATTGGTCCGGCAGTGAGCCTGTTTCAGGAAAGCTAC
TACGAGCTAATGAAACACGCGCTGAAGGATGACGGAATCGTGTGCTCCCA
GGGCGGTAGCTTCTGGCTGGACCTGGACTACATCAAGAAGACCATGTCCG
GCTGCAAGGAGCACTTTGCTAAGGTGGCCTATGCCGTCACCTCCGTTCCG
TCCTATCCCTGCGGCCACATTGGCTTCGTCATGGGCTCCCTGAACAAAAA
CCAGGACTTCGCTACTCCCAAGCTTGGAAAGTCCGAAATCGATTCTATAG
ACCTAAGGTACTACTCCTCCGAGGTTCACTCCGCCGCCTTTGCCTTGCCT
CGATGGGTGCAGAAGCACTTTTACGAAGCAAGCTTTCTAGACCAT

BO17633.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-RC 864 CG8327-PC 1..861 17..877 4305 100 Plus
SpdS-RA 864 CG8327-PA 1..861 17..877 4305 100 Plus
SpdS-RB 654 CG8327-PB 1..651 227..877 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-RC 995 CG8327-RC 51..911 17..877 4305 100 Plus
SpdS-RA 1511 CG8327-RA 81..941 17..877 4305 100 Plus
SpdS-RB 1189 CG8327-RB 379..1105 151..877 3635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9632377..9633103 151..877 3635 100 Plus
3R 32079331 3R 9631721..9631854 17..150 670 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:02:09 has no hits.

BO17633.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:56 Download gff for BO17633.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 1..864 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:39 Download gff for BO17633.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 63..933 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:10 Download gff for BO17633.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 81..941 17..879 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:56 Download gff for BO17633.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 63..933 17..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:12 Download gff for BO17633.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 81..941 17..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:12 Download gff for BO17633.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9631721..9631854 17..150 100 -> Plus
3R 9632377..9633103 151..879 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:10 Download gff for BO17633.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5457443..5457576 17..150 100 -> Plus
arm_3R 5458099..5458825 151..879 99   Plus

BO17633.pep Sequence

Translation from 16 to 895

> BO17633.pep
MDSLNNGWFSELQADLWPGQSFSLKVKEVIHKEKSRFQDIQIVETETYGR
CLILDGIIQCTARDEFSYQEMISFLPLCAHPNPKKVLIVGGGDGGVAREV
VKHPLVEEVHQVEIDDRVVELSKQYLPAMACGFANEKLKLTIGDGFDYMK
KHKNEFDVIITDSSDPIGPAVSLFQESYYELMKHALKDDGIVCSQGGSFW
LDLDYIKKTMSGCKEHFAKVAYAVTSVPSYPCGHIGFVMGSLNKNQDFAT
PKLGKSEIDSIDLRYYSSEVHSAAFALPRWVQKHFYEASFLDH

BO17633.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-PC 287 CG8327-PC 1..287 1..287 1526 100 Plus
SpdS-PA 287 CG8327-PA 1..287 1..287 1526 100 Plus
SpdS-PB 217 CG8327-PB 1..217 71..287 1155 100 Plus
CG4300-PB 366 CG4300-PB 140..319 26..196 156 30.4 Plus
CG4300-PA 367 CG4300-PA 141..320 26..196 156 30.4 Plus