Clone BO17637 Report

Search the DGRC for BO17637

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:176
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptRpL10-RC
Protein status:BO17637.pep: validated full length
Sequenced Size:688

Clone Sequence Records

BO17637.3prime Sequence

687 bp (667 high quality bases) assembled on 2006-10-13

> BO17637.3prime
ATGGTCTAGAAAGCTTGCAGCATAAACATCACGCTGAGCTTTTTCCCATG
CGGCAATCGGGCCATGCTCTGGGCGGTATTTCACATTGCAACCATCAGGC
TCAAGGCGGTTGTCATCGCGAAGTTCTTCATAACGCTCACGTTCGTATTT
GGTGAATCCCCACTTCTTTGAAACATAGATCTTTTGACGTCCAGGGAACT
TAAACTTAGCACGCCGCAAAGCTTCAATAACTTGAGCCTTGTAACGATCG
CTAGAGCGGACAGACATAATGGGTTGACCAATACGAACTCGAGCAACCGT
GCCCTGCGGTTTTCCAAACGCTCCTCGCATTCCAGTTTGAAGCCTATCAG
CTCCAGCGCACGACAACATTTTGTTGATGCGAATGACGTGGAATGGATGC
AGGCGCATTCTGATGTGGAACTGGTCCTTACCGCAGTACTTCACCAAGTA
CTTGTTGCAACAAATGCGTCCAGCTTCCAAAGCTTCACTACTCAGCTGTT
CGTATTCATCAGAAACCAAATGAACACACAGGGGAAAATCCTCAACTGTA
GCTTTTTTTCTTCCCAAATCAAATATACGAATTTTTGGATCAGGGACACC
ACGGCAAAACCGAGATTTAGGGTACGGCTTATTTTTTGCAATAGCGGTAG
CATCTAGCTGGTCGTCGGCCCATGTCGACTGATAACT

BO17637.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17521-PA 696 Qm-RA 33..693 680..19 3245 99.6 Minus
CG17521-PB 714 Qm-RB 51..711 680..19 3245 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10-RE 1224 CG17521-RE 37..697 680..19 3270 99.7 Minus
RpL10-RD 789 CG17521-RD 48..708 680..19 3270 99.7 Minus
RpL10-RC 778 CG17521-RC 37..697 680..19 3270 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23094905..23095212 343..651 1495 99.7 Plus
3L 28110227 3L 23094684..23094849 181..346 830 100 Plus
3L 28110227 3L 23093717..23093880 19..182 820 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:47:00 has no hits.

BO17637.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:02 Download gff for BO17637.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17521-PB 42..714 15..687 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:10:17 Download gff for BO17637.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL10-RC 32..700 15..687 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:53:02 Download gff for BO17637.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL10-RC 32..700 15..687 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:53:02 Download gff for BO17637.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 23093714..23093878 15..180 98 <- Plus
3L 23094684..23094846 181..343 100 <- Plus
3L 23094906..23095211 344..650 99 <- Plus
3L 23095275..23095304 651..680 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:10:17 Download gff for BO17637.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23087784..23087946 181..343 100 <- Plus
arm_3L 23086814..23086978 15..180 98 <- Plus
arm_3L 23088006..23088311 344..650 99 <- Plus
arm_3L 23088375..23088404 651..680 96   Plus

BO17637.5prime Sequence

686 bp (686 high quality bases) assembled on 2006-10-13

> BO17637.5prime
GAAGTTATCAGTCGACATGGGCCGACGACCAGCTAGATGCTACCGCTATT
GCAAAAATAAGCCGTACCCTAAATCTCGGTTTTGCCGTGGTGTCCCTGAT
CCAAAAATTCGTATATTTGATTTGGGAAGAAAAAAAGCTACAGTTGAGGA
TTTTCCCCTGTGTGTTCATTTGGTTTCTGATGAATACGAACAGCTGAGTA
GTGAAGCTTTGGAAGCTGGACGCATTTGTTGCAACAAGTACTTGGTGAAG
TACTGCGGTAAGGACCAGTTCCACATCAGAATGCGCCTGCATCCATTCCA
CGTCATTCGCATCAACAAAATGTTGTCGTGCGCTGGAGCTGATAGGCTTC
AAACTGGAATGCGAGGAGCGTTTGGAAAACCGCAGGGCACGGTTGCTCGA
GTTCGTATTGGTCAACCCATTATGTCTGTCCGCTCTAGCGATCGTTACAA
GGCTCAAGTTATTGAAGCTTTGCGGCGTGCTAAGTTTAAGTTCCCTGGAC
GTCAAAAGATCTATGTTTCAAAGAAGTGGGGATTCACCAAATACGAACGT
GAGCGTTATGAAGAACTTCGCGATGACAACCGCCTTGAGCCTGATGGTTG
CAATGTGAAATACCGCCCAGAGCATGGCCCGATTGCCGCATGGGAAAAAG
CTCAGCGTGATGTTTATGCTGCAAGCTTTCTAGACC

BO17637.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG17521-PA 696 Qm-RA 33..693 10..670 3280 99.8 Plus
CG17521-PB 714 Qm-RB 51..711 10..670 3280 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10-RE 1224 CG17521-RE 37..697 10..670 3290 99.8 Plus
RpL10-RD 789 CG17521-RD 48..708 10..670 3290 99.8 Plus
RpL10-RC 778 CG17521-RC 37..697 10..670 3290 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23094905..23095212 346..39 1540 100 Minus
3L 28110227 3L 23094684..23094849 508..343 830 100 Minus
3L 28110227 3L 23093717..23093880 670..507 820 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:57:29 has no hits.

BO17637.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:03 Download gff for BO17637.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17521-PB 42..714 3..674 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:37:18 Download gff for BO17637.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL10-RC 30..700 1..674 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:25:07 Download gff for BO17637.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL10-RC 30..700 1..674 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:25:07 Download gff for BO17637.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 23094684..23094846 346..508 100 <- Minus
3L 23093714..23093878 509..674 98 <- Minus
3L 23094906..23095211 40..345 100 <- Minus
3L 23095275..23095304 10..39 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:37:18 Download gff for BO17637.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23086814..23086978 509..674 98 <- Minus
arm_3L 23087784..23087946 346..508 100 <- Minus
arm_3L 23088006..23088311 40..345 100 <- Minus
arm_3L 23088375..23088404 10..39 96   Minus

BO17637.complete Sequence

688 bp assembled on 2006-12-18

GenBank Submission: FJ634185

> BO17637.complete
GAAGTTATCAGTCGACATGGGCCGACGACCAGCTAGATGCTACCGCTATT
GCAAAAATAAGCCGTACCCTAAATCTCGGTTTTGCCGTGGTGTCCCTGAT
CCAAAAATTCGTATATTTGATTTGGGAAGAAAAAAAGCTACAGTTGAGGA
TTTTCCCCTGTGTGTTCATTTGGTTTCTGATGAATACGAACAGCTGAGTA
GTGAAGCTTTGGAAGCTGGACGCATTTGTTGCAACAAGTACTTGGTGAAG
TACTGCGGTAAGGACCAGTTCCACATCAGAATGCGCCTGCATCCATTCCA
CGTCATTCGCATCAACAAAATGTTGTCGTGCGCTGGAGCTGATAGGCTTC
AAACTGGAATGCGAGGAGCGTTTGGAAAACCGCAGGGCACGGTTGCTCGA
GTTCGTATTGGTCAACCCATTATGTCTGTCCGCTCTAGCGATCGTTACAA
GGCTCAAGTTATTGAAGCTTTGCGGCGTGCTAAGTTTAAGTTCCCTGGAC
GTCAAAAGATCTATGTTTCAAAGAAGTGGGGATTCACCAAATACGAACGT
GAGCGTTATGAAGAACTTCGCGATGACAACCGCCTTGAGCCTGATGGTTG
CAATGTGAAATACCGCCCAGAGCATGGCCCGATTGCCGCATGGGAAAAAG
CTCAGCGTGATGTTTATGCTGCAAGCTTTCTAGACCAT

BO17637.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10-RE 657 CG17521-PE 1..654 17..670 3270 100 Plus
RpL10-RD 657 CG17521-PD 1..654 17..670 3270 100 Plus
RpL10-RC 657 CG17521-PC 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10-RE 1224 CG17521-RE 37..697 10..670 3290 99.8 Plus
RpL10-RD 789 CG17521-RD 48..708 10..670 3290 99.8 Plus
RpL10-RC 778 CG17521-RC 37..697 10..670 3290 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23094905..23095212 346..39 1540 100 Minus
3L 28110227 3L 23094684..23094849 508..343 830 100 Minus
3L 28110227 3L 23093717..23093880 670..507 820 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:54:22 has no hits.

BO17637.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:59 Download gff for BO17637.complete
Subject Subject Range Query Range Percent Splice Strand
Qm-RD 1..657 17..674 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:43 Download gff for BO17637.complete
Subject Subject Range Query Range Percent Splice Strand
Qm-RD 35..707 3..674 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:31 Download gff for BO17637.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10-RC 44..697 17..672 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:59 Download gff for BO17637.complete
Subject Subject Range Query Range Percent Splice Strand
Qm-RD 35..707 3..674 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:24 Download gff for BO17637.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10-RC 44..697 17..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:24 Download gff for BO17637.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23093715..23093878 509..672 98 <- Minus
3L 23094684..23094846 346..508 100 <- Minus
3L 23094906..23095211 40..345 100 <- Minus
3L 23095275..23095297 17..39 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:31 Download gff for BO17637.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23088006..23088311 40..345 100 <- Minus
arm_3L 23088375..23088397 17..39 100   Minus
arm_3L 23086815..23086978 509..672 98 <- Minus
arm_3L 23087784..23087946 346..508 100 <- Minus

BO17637.pep Sequence

Translation from 16 to 688

> BO17637.pep
MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCV
HLVSDEYEQLSSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRIN
KMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIE
ALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRDDNRLEPDGCNVKYR
PEHGPIAAWEKAQRDVYAASFLDH

BO17637.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10-PE 218 CG17521-PE 1..218 1..218 1183 100 Plus
RpL10-PD 218 CG17521-PD 1..218 1..218 1183 100 Plus
RpL10-PC 218 CG17521-PC 1..218 1..218 1183 100 Plus