Clone Sequence Records
BO17637.3prime Sequence
687 bp (667 high quality bases) assembled on 2006-10-13
> BO17637.3prime
ATGGTCTAGAAAGCTTGCAGCATAAACATCACGCTGAGCTTTTTCCCATG
CGGCAATCGGGCCATGCTCTGGGCGGTATTTCACATTGCAACCATCAGGC
TCAAGGCGGTTGTCATCGCGAAGTTCTTCATAACGCTCACGTTCGTATTT
GGTGAATCCCCACTTCTTTGAAACATAGATCTTTTGACGTCCAGGGAACT
TAAACTTAGCACGCCGCAAAGCTTCAATAACTTGAGCCTTGTAACGATCG
CTAGAGCGGACAGACATAATGGGTTGACCAATACGAACTCGAGCAACCGT
GCCCTGCGGTTTTCCAAACGCTCCTCGCATTCCAGTTTGAAGCCTATCAG
CTCCAGCGCACGACAACATTTTGTTGATGCGAATGACGTGGAATGGATGC
AGGCGCATTCTGATGTGGAACTGGTCCTTACCGCAGTACTTCACCAAGTA
CTTGTTGCAACAAATGCGTCCAGCTTCCAAAGCTTCACTACTCAGCTGTT
CGTATTCATCAGAAACCAAATGAACACACAGGGGAAAATCCTCAACTGTA
GCTTTTTTTCTTCCCAAATCAAATATACGAATTTTTGGATCAGGGACACC
ACGGCAAAACCGAGATTTAGGGTACGGCTTATTTTTTGCAATAGCGGTAG
CATCTAGCTGGTCGTCGGCCCATGTCGACTGATAACT
BO17637.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:57:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17521-PA | 696 | Qm-RA | 33..693 | 680..19 | 3245 | 99.6 | Minus |
CG17521-PB | 714 | Qm-RB | 51..711 | 680..19 | 3245 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10-RE | 1224 | CG17521-RE | 37..697 | 680..19 | 3270 | 99.7 | Minus |
RpL10-RD | 789 | CG17521-RD | 48..708 | 680..19 | 3270 | 99.7 | Minus |
RpL10-RC | 778 | CG17521-RC | 37..697 | 680..19 | 3270 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:46:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 23094905..23095212 | 343..651 | 1495 | 99.7 | Plus |
3L | 28110227 | 3L | 23094684..23094849 | 181..346 | 830 | 100 | Plus |
3L | 28110227 | 3L | 23093717..23093880 | 19..182 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:47:00 has no hits.
BO17637.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:02 Download gff for
BO17637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17521-PB | 42..714 | 15..687 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:10:17 Download gff for
BO17637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10-RC | 32..700 | 15..687 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:53:02 Download gff for
BO17637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10-RC | 32..700 | 15..687 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:53:02 Download gff for
BO17637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23093714..23093878 | 15..180 | 98 | <- | Plus |
3L | 23094684..23094846 | 181..343 | 100 | <- | Plus |
3L | 23094906..23095211 | 344..650 | 99 | <- | Plus |
3L | 23095275..23095304 | 651..680 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:10:17 Download gff for
BO17637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 23087784..23087946 | 181..343 | 100 | <- | Plus |
arm_3L | 23086814..23086978 | 15..180 | 98 | <- | Plus |
arm_3L | 23088006..23088311 | 344..650 | 99 | <- | Plus |
arm_3L | 23088375..23088404 | 651..680 | 96 | | Plus |
BO17637.5prime Sequence
686 bp (686 high quality bases) assembled on 2006-10-13
> BO17637.5prime
GAAGTTATCAGTCGACATGGGCCGACGACCAGCTAGATGCTACCGCTATT
GCAAAAATAAGCCGTACCCTAAATCTCGGTTTTGCCGTGGTGTCCCTGAT
CCAAAAATTCGTATATTTGATTTGGGAAGAAAAAAAGCTACAGTTGAGGA
TTTTCCCCTGTGTGTTCATTTGGTTTCTGATGAATACGAACAGCTGAGTA
GTGAAGCTTTGGAAGCTGGACGCATTTGTTGCAACAAGTACTTGGTGAAG
TACTGCGGTAAGGACCAGTTCCACATCAGAATGCGCCTGCATCCATTCCA
CGTCATTCGCATCAACAAAATGTTGTCGTGCGCTGGAGCTGATAGGCTTC
AAACTGGAATGCGAGGAGCGTTTGGAAAACCGCAGGGCACGGTTGCTCGA
GTTCGTATTGGTCAACCCATTATGTCTGTCCGCTCTAGCGATCGTTACAA
GGCTCAAGTTATTGAAGCTTTGCGGCGTGCTAAGTTTAAGTTCCCTGGAC
GTCAAAAGATCTATGTTTCAAAGAAGTGGGGATTCACCAAATACGAACGT
GAGCGTTATGAAGAACTTCGCGATGACAACCGCCTTGAGCCTGATGGTTG
CAATGTGAAATACCGCCCAGAGCATGGCCCGATTGCCGCATGGGAAAAAG
CTCAGCGTGATGTTTATGCTGCAAGCTTTCTAGACC
BO17637.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:57:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17521-PA | 696 | Qm-RA | 33..693 | 10..670 | 3280 | 99.8 | Plus |
CG17521-PB | 714 | Qm-RB | 51..711 | 10..670 | 3280 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:57:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10-RE | 1224 | CG17521-RE | 37..697 | 10..670 | 3290 | 99.8 | Plus |
RpL10-RD | 789 | CG17521-RD | 48..708 | 10..670 | 3290 | 99.8 | Plus |
RpL10-RC | 778 | CG17521-RC | 37..697 | 10..670 | 3290 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:57:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 23094905..23095212 | 346..39 | 1540 | 100 | Minus |
3L | 28110227 | 3L | 23094684..23094849 | 508..343 | 830 | 100 | Minus |
3L | 28110227 | 3L | 23093717..23093880 | 670..507 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:57:29 has no hits.
BO17637.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:03 Download gff for
BO17637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17521-PB | 42..714 | 3..674 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:37:18 Download gff for
BO17637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10-RC | 30..700 | 1..674 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:25:07 Download gff for
BO17637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10-RC | 30..700 | 1..674 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:25:07 Download gff for
BO17637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23094684..23094846 | 346..508 | 100 | <- | Minus |
3L | 23093714..23093878 | 509..674 | 98 | <- | Minus |
3L | 23094906..23095211 | 40..345 | 100 | <- | Minus |
3L | 23095275..23095304 | 10..39 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:37:18 Download gff for
BO17637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 23086814..23086978 | 509..674 | 98 | <- | Minus |
arm_3L | 23087784..23087946 | 346..508 | 100 | <- | Minus |
arm_3L | 23088006..23088311 | 40..345 | 100 | <- | Minus |
arm_3L | 23088375..23088404 | 10..39 | 96 | | Minus |
BO17637.complete Sequence
688 bp assembled on 2006-12-18
GenBank Submission: FJ634185
> BO17637.complete
GAAGTTATCAGTCGACATGGGCCGACGACCAGCTAGATGCTACCGCTATT
GCAAAAATAAGCCGTACCCTAAATCTCGGTTTTGCCGTGGTGTCCCTGAT
CCAAAAATTCGTATATTTGATTTGGGAAGAAAAAAAGCTACAGTTGAGGA
TTTTCCCCTGTGTGTTCATTTGGTTTCTGATGAATACGAACAGCTGAGTA
GTGAAGCTTTGGAAGCTGGACGCATTTGTTGCAACAAGTACTTGGTGAAG
TACTGCGGTAAGGACCAGTTCCACATCAGAATGCGCCTGCATCCATTCCA
CGTCATTCGCATCAACAAAATGTTGTCGTGCGCTGGAGCTGATAGGCTTC
AAACTGGAATGCGAGGAGCGTTTGGAAAACCGCAGGGCACGGTTGCTCGA
GTTCGTATTGGTCAACCCATTATGTCTGTCCGCTCTAGCGATCGTTACAA
GGCTCAAGTTATTGAAGCTTTGCGGCGTGCTAAGTTTAAGTTCCCTGGAC
GTCAAAAGATCTATGTTTCAAAGAAGTGGGGATTCACCAAATACGAACGT
GAGCGTTATGAAGAACTTCGCGATGACAACCGCCTTGAGCCTGATGGTTG
CAATGTGAAATACCGCCCAGAGCATGGCCCGATTGCCGCATGGGAAAAAG
CTCAGCGTGATGTTTATGCTGCAAGCTTTCTAGACCAT
BO17637.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10-RE | 657 | CG17521-PE | 1..654 | 17..670 | 3270 | 100 | Plus |
RpL10-RD | 657 | CG17521-PD | 1..654 | 17..670 | 3270 | 100 | Plus |
RpL10-RC | 657 | CG17521-PC | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10-RE | 1224 | CG17521-RE | 37..697 | 10..670 | 3290 | 99.8 | Plus |
RpL10-RD | 789 | CG17521-RD | 48..708 | 10..670 | 3290 | 99.8 | Plus |
RpL10-RC | 778 | CG17521-RC | 37..697 | 10..670 | 3290 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:54:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 23094905..23095212 | 346..39 | 1540 | 100 | Minus |
3L | 28110227 | 3L | 23094684..23094849 | 508..343 | 830 | 100 | Minus |
3L | 28110227 | 3L | 23093717..23093880 | 670..507 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:54:22 has no hits.
BO17637.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:59 Download gff for
BO17637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Qm-RD | 1..657 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:43 Download gff for
BO17637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Qm-RD | 35..707 | 3..674 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:31 Download gff for
BO17637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10-RC | 44..697 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:59 Download gff for
BO17637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Qm-RD | 35..707 | 3..674 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:24 Download gff for
BO17637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10-RC | 44..697 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:24 Download gff for
BO17637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23093715..23093878 | 509..672 | 98 | <- | Minus |
3L | 23094684..23094846 | 346..508 | 100 | <- | Minus |
3L | 23094906..23095211 | 40..345 | 100 | <- | Minus |
3L | 23095275..23095297 | 17..39 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:31 Download gff for
BO17637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 23088006..23088311 | 40..345 | 100 | <- | Minus |
arm_3L | 23088375..23088397 | 17..39 | 100 | | Minus |
arm_3L | 23086815..23086978 | 509..672 | 98 | <- | Minus |
arm_3L | 23087784..23087946 | 346..508 | 100 | <- | Minus |
BO17637.pep Sequence
Translation from 16 to 688
> BO17637.pep
MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCV
HLVSDEYEQLSSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRIN
KMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIE
ALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRDDNRLEPDGCNVKYR
PEHGPIAAWEKAQRDVYAASFLDH
BO17637.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10-PE | 218 | CG17521-PE | 1..218 | 1..218 | 1183 | 100 | Plus |
RpL10-PD | 218 | CG17521-PD | 1..218 | 1..218 | 1183 | 100 | Plus |
RpL10-PC | 218 | CG17521-PC | 1..218 | 1..218 | 1183 | 100 | Plus |