Clone BO17641 Report

Search the DGRC for BO17641

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:176
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptMarf-RB
Protein status:BO17641.pep: Imported from assembly
Sequenced Size:2464

Clone Sequence Records

BO17641.complete Sequence

2464 bp assembled on 2010-04-13

GenBank Submission: KX797854

> BO17641.complete
GAAGTTATCAGTCGACATGGCGGCCTACTTGAACCGCACCATCTCGATGG
TGACCGGGCAAACGGGCCCCGCCGACGACGACCGTCACGCCTCCTCCACG
GACACGGTGGACAAATCCGGACCCGGTTCCCCGCTATCCCGGTTCAACTC
ATCGCTGCAACAATCCGGCTCCACAATGGCCGCCAATCTGCTACCGGAAT
CGCGGCTCTATCAATCCAACGACAAATCACCGCTCCAGATCTTTGTGCGC
GCCAAAAAGAAGATCAACGATATCTACGGCGAGATCGAGGAGTATGTCCA
TGAGACGACCACCTTTATCAACGCCCTGCACGCGGAAGCGGAGATCGTGG
ACAAGGCGGAACGGGAGCTGTTCGAAAGCTATGTGTACAAGGTGGCGGCC
ATTCGCGAAGTACTGCAGCGGGATCACATGAAGGTGGCCTTCTTTGGACG
CACCTCCAACGGCAAGAGCTCGGTGATTAATGCCATGTTGCGCGAGAAGA
TCCTGCCCAGCGGCATTGGGCACACCACGAATTGCTTCTGCCAAGTGGAG
GGCAGCAATGGCGGCGAGGCGTATCTTATGACAGAGGGCTCCGAGGAGAA
GCTAAATGTGGTGAACATCAAACAACTGGCGAATGCCTTGTGCCAGGAGA
AGCTCTGCGAGAGCAGTTTGGTGCGCATCTTTTGGCCGAGGGAACGCTGC
AGCCTGCTGCGCGACGATGTCGTCTTTGTGGACTCACCTGGTGTGGATGT
GTCGGCCAATTTGGACGACTGGATCGATAACCATTGCCTGAACGCCGATG
TCTTTGTGCTGGTCCTGAATGCCGAGTCAACGATGACACGTGCGGAGAAG
CAGTTCTTTCACACCGTCTCGCAGAAGCTAAGCAAGCCGAACATCTTCAT
CCTGAACAATCGCTGGGATGCGTCGGCCAACGAGCCCGAGTGCCAGGAAT
CGGTTAAGTCTCAGCACACGGAACGCTGCATCGACTTCCTCACCAAGGAG
CTAAAGGTGAGCAACGAGAAGGAGGCGGCCGAAAGGGTATTCTTCGTTTC
CGCCAGGGAAACGCTGCAGGCGCGCATCGAGGAGGCCAAGGGCAATCCGC
CGCACATGGGTGCCATTGCCGAGGGCTTTCAGATACGCTACTTCGAGTTC
CAGGACTTCGAGCGCAAGTTCGAGGAGTGCATCTCGCAGAGTGCTGTGAA
AACAAAGTTCCAGCAGCACAGTTCGCGCGGCAAGAGTGTTTCGGGTGACA
TGAAATCAATGTTGGACAACATTTACGAGCGGATCACCATATTCCGCAAT
CTGAAGCAGGACCAGAAGAACCTGCTCACCGAACGCATCCAGGGCACAGA
GACGCAGATGATGCAGGTTACGCGGGAAATGAAGATGAAGATCCACAACA
TGGTCGAGGAGGTGGAGGAGAAGGTGTCAAAGGCGCTGAACGAGGAGATC
TGGCGCCTGGGCGTACTCATTGACGAGTTCAATATGCCCTTCCATCCGGA
GCGTTTGGTGCTGAACATCTACAAAAAGGAATTGAATGCCCATGTGGAGA
GCGGCCTGGGCAGCAATCTGCGCGCCCGCCTATCCATGGCCCTGGCCATG
AACGTCGAGTCCGCCCAGACGGAGATGACCGATCGCATGCACGCCCTGGT
GCCCAACGAGCAGCTCCTGGCCACCAGCACCAAGATGGTGGTGCGCACGC
AGCCCTTCGAGATGCTCTACTCACTGAATTGCCAGAACCTCTGCGCCGAC
TTCCAGGAGGATCTGGAGTTTAAGTTCAGCTGGGGCATTGCGGCGATGAT
CCAGCGCTTCACCGGCAAGGTGCGCGAGCGCAGCAAGAAGGGCCAGCCGG
CGCTGGTCAATCGACAGAGCAGTATTGGACACAGCGTATCGACGCCGACC
ACGACGCCCGTGGAAGCCACTCCTGTGTGCCTGCTGCCCGCTCCCGTTGT
GGCTGGCATTACGCCCGAGCAGCTGTCGTTGATCTCACGCTTCGCGGTGT
CCTCCATTGGATCGCAGGGCACCGTTGGTGGTCTCGTCGTAGCCGGTGTC
ATGCTGAAAACTATCGGCTGGCGTGTCCTGGTGGGCGTGGGTGCCCTCTA
CGGCTGCATCTACCTGTACGAGCGCCTCTCGTGGACAAATTCAGCCAAGG
AGCGAACGTTCAAGTCGCAGTACGTGCGCCATGCCACCAAGAAGCTCAAG
ATGATTGTCGACCTCACCTCGGCCAACTGCAGCCACCAAGTGCAGCAGGA
ATTGTCGAGCACCTTTGCCCGTTTGTGCCGCACGGTTGATACCGCCACCA
CGGACATGAATGATGAGCTCAAGACGCTGGACTCGCAGCTGAACATCCTG
GAGGCGAACCAGAAGCAATTGAAGCTGCTTCGCAACAAGGCCAACTACAT
ACAGAACGAGCTGGACATCTTCGAGCACAACTATATATCGCCGCAGGCAA
GCTTTCTAGACCAT

BO17641.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
Marf-RC 2433 CG3869-PC 1..2430 17..2446 12135 100 Plus
Marf-RB 2433 CG3869-PB 1..2430 17..2446 12135 100 Plus
Marf-RD 2445 CG3869-PD 1..2442 17..2446 11980 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
Marf-RC 3605 CG3869-RC 505..2938 13..2446 12140 99.9 Plus
Marf-RB 3444 CG3869-RB 344..2777 13..2446 12140 99.9 Plus
Marf-RD 3617 CG3869-RD 505..2950 13..2446 11985 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6368525..6369452 952..1879 4640 100 Plus
X 23542271 X 6367718..6368059 613..954 1695 99.7 Plus
X 23542271 X 6366853..6367163 13..323 1540 99.7 Plus
X 23542271 X 6367358..6367648 323..613 1455 100 Plus
X 23542271 X 6370059..6370257 2248..2446 995 100 Plus
X 23542271 X 6369793..6369990 2051..2248 990 100 Plus
X 23542271 X 6369522..6369692 1880..2050 855 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:02:30 has no hits.

BO17641.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:23 Download gff for BO17641.complete
Subject Subject Range Query Range Percent Splice Strand
Marf-RC 509..2938 17..2448 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:04 Download gff for BO17641.complete
Subject Subject Range Query Range Percent Splice Strand
Marf-RB 348..2777 17..2448 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:22 Download gff for BO17641.complete
Subject Subject Range Query Range Percent Splice Strand
Marf-RB 348..2777 17..2448 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:22 Download gff for BO17641.complete
Subject Subject Range Query Range Percent Splice Strand
X 6370059..6370257 2248..2448 99   Plus
X 6368526..6369452 953..1879 100 -> Plus
X 6369522..6369692 1880..2050 100 -> Plus
X 6369793..6369989 2051..2247 100 -> Plus
X 6366857..6367163 17..323 100 -> Plus
X 6367359..6367648 324..613 100 -> Plus
X 6367719..6368057 614..952 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:04 Download gff for BO17641.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6260890..6261196 17..323 100 -> Plus
arm_X 6261392..6261681 324..613 100 -> Plus
arm_X 6261752..6262090 614..952 99 -> Plus
arm_X 6262559..6263485 953..1879 100 -> Plus
arm_X 6263555..6263725 1880..2050 100 -> Plus
arm_X 6263826..6264022 2051..2247 100 -> Plus
arm_X 6264092..6264290 2248..2448 99   Plus

BO17641.3prime Sequence

882 bp (756 high quality bases) assembled on 2006-10-13

> BO17641.3prime
ATGGTCTAGAAAGCTTGCCTGCGGCGATATATAGTTGTGCTCGAAGATGT
CCAGCTCGTTCTGTATGTAGTTGGCCTTGTTGCGAAGCAGCTTCAATTGC
TTCTGGTTCGCCTCCAGGATGTTCAGCTGCGAGTCCAGCGTCTTGAGCTC
ATCATTCATGTCCGTGGTGGCGGTATCAACCGTGCGGCACAAACGGGCAA
AGGTGCTCGACAATTCCTGCTGCACTTGGTGGCTGCAGTTGGCCGAGGTG
AGGTCGACAATCATCTTGAGCTTCTTGGTGGCATGGCGCACGTACTGCGA
CTTGAACGTTCGCTCCTTGGCTGAATTTGTCCACGAGAGGCGCTCGTACA
GGTAGATGCAGCCGTAGAGGGCACCCACGCCCACCAGGACACGCCAGCCG
ATAGTTTTCAGCATGACACCGGCTACGACGAGACCACCAACGGTGCCCTG
CGATCCAATGGAGGACACCGCGAAGCGTGAGATCAACGACAGCTGCTCGG
GCGTAATGCCAGCCACAACGGGAGCGGGCAGCAGGCACACAGGAGTGGCT
TCCACGGGCGTCGTGGTCGGCGTCGATACGCTGTGTCCAATACTGCTCTG
TCGATTGACCAGCGCCGGCTGGCCCTTCTTGCTGCGCTCGCGCACCTTGC
CGGTGAAGCGCTGGATCATCGCCGCAATGCCCCAGCTGAACTTAAACTCC
AGATCCTCCTGGAAGTCGGCGCAGAGGTTCTGGCAATTCAGTGAGTAGAG
CATCTCGAAGGGCTGCGTGCGCACCACCATCTTGGTGCTGGTGGCCAGGA
GCTGCTCGTTGGGCACCAGGCGTGCATGCGATCGGTCATCTCCGTCTGGG
CGGACTCGACGTTCATGGCCAGGGCCATGGAT

BO17641.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3869-PB 2433 Marf-RB 1566..2430 882..19 4285 99.8 Minus
CG3869-PC 2433 Marf-RC 1566..2430 882..19 4285 99.8 Minus
CG3869-PA 2502 Marf-RA 1933..2499 585..19 2835 100 Minus
CG3869-PA 2502 Marf-RA 1566..1863 882..586 1450 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Marf-RD 3617 CG3869-RD 2086..2950 882..19 4300 99.9 Minus
Marf-RC 3605 CG3869-RC 2074..2938 882..19 4300 99.9 Minus
Marf-RB 3444 CG3869-RB 1913..2777 882..19 4300 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6369155..6369452 882..586 1440 99.7 Minus
X 23542271 X 6370059..6370257 217..19 995 100 Minus
X 23542271 X 6369793..6369990 414..217 990 100 Minus
X 23542271 X 6369522..6369692 585..415 855 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:35:58 has no hits.

BO17641.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:06 Download gff for BO17641.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3869-PC 1566..2433 18..882 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:13:56 Download gff for BO17641.3prime
Subject Subject Range Query Range Percent Splice Strand
Marf-RB 1913..2777 19..882 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:31 Download gff for BO17641.3prime
Subject Subject Range Query Range Percent Splice Strand
Marf-RB 1913..2777 19..882 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:31 Download gff for BO17641.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6369155..6369452 586..882 99 -> Minus
X 6369522..6369692 415..585 100 -> Minus
X 6369793..6369989 218..414 100 -> Minus
X 6370059..6370257 19..217 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:13:56 Download gff for BO17641.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6263188..6263485 586..882 99 -> Minus
arm_X 6263555..6263725 415..585 100 -> Minus
arm_X 6263826..6264022 218..414 100 -> Minus
arm_X 6264092..6264290 19..217 100   Minus

BO17641.5prime Sequence

850 bp (784 high quality bases) assembled on 2006-10-13

> BO17641.5prime
GAAGTTATCAGTCGACATGGCGGCCTACTTGAACCGCACCATCTCGATGG
TGACCGGGCAAACGGGCCCCGCCGACGACGACCGTCACGCCTCCTCCACG
GACACGGTGGACAAATCCGGACCCGGTTCCCCGCTATCCCGGTTCAACTC
ATCGCTGCAACAATCCGGCTCCACAATGGCCGCCAATCTGCTACCGGAAT
CGCGGCTCTATCAATCCAACGACAAATCACCGCTCCAGATCTTTGTGCGC
GCCAAAAAGAAGATCAACGATATCTACGGCGAGATCGAGGAGTATGTCCA
TGAGACGACCACCTTTATCAACGCCCTGCACGCGGAAGCGGAGATCGTGG
ACAAGGCGGAACGGGAGCTGTTCGAAAGCTATGTGTACAAGGTGGCGGCC
ATTCGCGAAGTACTGCAGCGGGATCACATGAAGGTGGCCTTCTTTGGACG
CACCTCCAACGGCAAGAGCTCGGTGATTAATGCCATGTTGCGCGAGAAGA
TCCTGCCCAGCGGCATTGGGCACACCACGAATTGCTTCTGCCAAGTGGAG
GGCAGCAATGGCGGCGAGGCGTATCTTATGACAGAGGGCTCCGAGGAGAA
GCTAAATGTGGTGAACATCAAACAACTGGCGAATGCCTTGTGCCAGGAGA
AGCTCTGCGAGAGCAGTTTGGTGCGCATCTTTTGGCCGAGGGAACGCTGC
AGCCTGCTGCGCGACGATGTCGTCTTTGTGGACTCACCTGGTGTGGATGT
GTCGGCCAATTTGGACGACTGGATCGATAACCATTGCCTGAACGCCGATG
TCTTTGTGCTGGTCCTGAATGCCGAGTCAACGATGACACGTGCGGAAAAG

BO17641.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3869-PA 2502 Marf-RA 1..830 17..846 4125 99.8 Plus
CG3869-PB 2433 Marf-RB 1..830 17..846 4125 99.8 Plus
CG3869-PC 2433 Marf-RC 1..830 17..846 4125 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
Marf-RD 3617 CG3869-RD 505..1342 13..850 4145 99.6 Plus
Marf-RC 3605 CG3869-RC 505..1342 13..850 4145 99.6 Plus
Marf-RB 3444 CG3869-RB 344..1181 13..850 4145 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6366853..6367163 13..323 1540 99.7 Plus
X 23542271 X 6367358..6367648 323..613 1455 100 Plus
X 23542271 X 6367718..6367955 613..850 1160 99.2 Plus
Blast to na_te.dros performed on 2015-02-10 15:37:29 has no hits.

BO17641.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:07 Download gff for BO17641.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3869-PC 1..834 17..850 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:23:41 Download gff for BO17641.5prime
Subject Subject Range Query Range Percent Splice Strand
Marf-RB 340..1181 7..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:12 Download gff for BO17641.5prime
Subject Subject Range Query Range Percent Splice Strand
Marf-RB 340..1181 7..850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:12 Download gff for BO17641.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6367719..6367955 614..850 99   Plus
X 6366849..6367163 7..323 98 -> Plus
X 6367359..6367648 324..613 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:23:41 Download gff for BO17641.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6260882..6261196 7..323 98 -> Plus
arm_X 6261392..6261681 324..613 100 -> Plus
arm_X 6261752..6261988 614..850 99   Plus

BO17641.pep Sequence

Translation from 16 to 2464

> BO17641.pep
MAAYLNRTISMVTGQTGPADDDRHASSTDTVDKSGPGSPLSRFNSSLQQS
GSTMAANLLPESRLYQSNDKSPLQIFVRAKKKINDIYGEIEEYVHETTTF
INALHAEAEIVDKAERELFESYVYKVAAIREVLQRDHMKVAFFGRTSNGK
SSVINAMLREKILPSGIGHTTNCFCQVEGSNGGEAYLMTEGSEEKLNVVN
IKQLANALCQEKLCESSLVRIFWPRERCSLLRDDVVFVDSPGVDVSANLD
DWIDNHCLNADVFVLVLNAESTMTRAEKQFFHTVSQKLSKPNIFILNNRW
DASANEPECQESVKSQHTERCIDFLTKELKVSNEKEAAERVFFVSARETL
QARIEEAKGNPPHMGAIAEGFQIRYFEFQDFERKFEECISQSAVKTKFQQ
HSSRGKSVSGDMKSMLDNIYERITIFRNLKQDQKNLLTERIQGTETQMMQ
VTREMKMKIHNMVEEVEEKVSKALNEEIWRLGVLIDEFNMPFHPERLVLN
IYKKELNAHVESGLGSNLRARLSMALAMNVESAQTEMTDRMHALVPNEQL
LATSTKMVVRTQPFEMLYSLNCQNLCADFQEDLEFKFSWGIAAMIQRFTG
KVRERSKKGQPALVNRQSSIGHSVSTPTTTPVEATPVCLLPAPVVAGITP
EQLSLISRFAVSSIGSQGTVGGLVVAGVMLKTIGWRVLVGVGALYGCIYL
YERLSWTNSAKERTFKSQYVRHATKKLKMIVDLTSANCSHQVQQELSSTF
ARLCRTVDTATTDMNDELKTLDSQLNILEANQKQLKLLRNKANYIQNELD
IFEHNYISPQASFLDH

BO17641.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
Marf-PC 810 CG3869-PC 1..810 1..810 4141 100 Plus
Marf-PB 810 CG3869-PB 1..810 1..810 4141 100 Plus
Marf-PD 814 CG3869-PD 1..814 1..810 4126 99.5 Plus
fzo-PA 718 CG4568-PA 14..716 62..808 1024 34.7 Plus