Clone Sequence Records
BO17642.complete Sequence
3037 bp assembled on 2010-04-13
GenBank Submission: KX797166
> BO17642.complete
GAAGTTATCAGTCGACATGGATCCATTTGTTGGCTGGTTTCAGAAGGAAC
AGGAGGGACCATCGCTGTGCACATGGTTAAAGATTTGGGAGACGAATGCC
CAAGAGATGGGCGCATTGCTTAATCAACAGCTACAGCAGGCGACGACGAT
CAACGGGAGCACGAGCAGCAGCAGCAGCAGCAGCAATAGTGGTAACAACA
ACAACAACAACAACAATAACATCATCAATAACACTATCACCAACACGACC
AATAACACTGGTAACAATTCATCGGCCAAACCCTACTTATCGCGACCCTA
CAGCTCGCTAAATCGGGTGCTCAATTTCCGAGCGGATTCCCTGGAGATCC
TGCAGCAGCAACAACAACAGCAGCAGCTCAACGGGACCACTCAGCGCAAC
AGCACCAACATCAATACCACAAGCGGCGGCAGCACTAGCTCGTCGGCAGA
TTCCACCACGAATCGGGACAATAACTCACCCGCCAATAGCAGTTCAACCA
ACGGACCCGGAGCAGGAACGGGAACGTCAACAGGAGCAGGAGGTACCGGT
ACAAATAGTCCGGCGACGACAGCGTCAAGCACAGCTGCGACCACGACTGG
TCCAGCCACTAGTATGAGCGACACCAGCAACAACCCGCCACAATCAACGA
CCACGCCCGCCAGCCGCACGAACAGCATCTACTACAATCCATCGCGGAAG
AAACGACCGGAGAACAAGGCTGGCGGAGCCCACTACTATATGAACAACCA
TATGGAGATGATCGCCAAGTACAAGGGCGAACCGTGGCGCAAGCCGGACT
ATCCGTATGGCGAGGGCGTTATCGGGCTGCACGAGGAGATCGAGCATTTC
TATCAGTACGTCCTGCCCACGCCCTGCGAACACGCCATCCGCAACGAGGT
GGTCAAGCGTATCGAGGCCGTTGTCCATTCCATCTGGCCACAGGCAGTAG
TCGAGATCTTTGGCTCCTTTCGCACTGGCCTCTTTTTGCCCACCTCCGAC
ATAGATCTCGTTGTGTTAGGTTTGTGGGAGAAGCTGCCGCTGAGAACGCT
GGAGTTCGAGCTAGTGAGCCGTGGTATCGCCGAGGCTTGTACGGTGCGTG
TTCTGGACAAGGCATCAGTGCCCATCATCAAGCTGACGGACCGGGAAACG
CAAGTGAAGGTAGACATATCGTTCAACATGCAGAGTGGTGTTCAGTCGGC
GGAGCTGATTAAGAAGTTTAAGCGCGACTATCCAGTGCTGGAGAAGCTAG
TGCTTGTGCTGAAGCAGTTCTTACTACTTCGCGATCTCAACGAGGTGTTC
ACGGGCGGCATCTCCTCCTACTCGCTGATCCTTATGTGCATCAGCTTCCT
GCAGATGCATCCGCGCGGTATCTACCACGATACAGCCAATCTGGGGGTGC
TTCTCCTCGAGTTCTTCGAACTTTATGGACGTCGCTTCAACTACATGAAG
ATCGGCATCTCCATAAAGAACGGTGGCCGCTACATGCCCAAGGATGAGCT
GCAGCGTGACATGGTCGATGGCCATCGACCCTCGCTCCTGTGCATCGAGG
ATCCGCTGACGCCAGGCAATGATATCGGTCGAAGCAGCTACGGCGTCTTC
CAGGTGCAACAGGCATTCAAGTGCGCCTACCGCGTGCTCGCCCTTGCCGT
CAGTCCGCTCAACCTTCTCGGCATCGATCCGCGCGTCAACTCGATACTGG
GTCGAATCATTCACATCACCGACGACGTGATCGATTATCGCGAATGGATC
CGCGAGAACTTCGAACATCTGGTGGTGGTGGATCGTATCTCGCCGCTGCC
CACTGCCGCTCCCACTGCGTACGCCACCGCCAATGGGGCGCCAAAATATG
TGATTATGCCCTCGGGCGCCGTTGTCCAGCAGCTGTACCATCATCCGGTG
CAGGTGCCCACCGCTCACGGGCACAGCCATGCGCACAGCCACAGTCACGG
GCACGCGCATCCTGGCGCCCATCTGTGCCAGCCGTATGTGACCGGGACCA
CTGTATCTGCTGTAACGACGACTACAACGATGGCGGTGGTGACCGTGGGC
GTGTCAGCCGGCGGAGTCCAACAGCAGCAACAGCAACAGAATGCGACGGC
CCATACCCACTCGCAACAGCAGACACAGAACCAATCGCAGTCGCGCCATA
GACGCGGCAGCACCTCGTCGGGCGATGACTCCGAGGATAGCAAGGACGGC
GATGTTGTCGAGACGACGTCGAGTGCTCAGGAGGTCGTTGACATCGCGCT
ATCGACGCCAAATGGCCTGGCCAACATGTCCATGCCCATGCCAGTGCATG
CTGTCGGAATGCCTGCGTCGAACAGTTGGAGCGGTAATGGCAATGGAAAC
GGAAACAGCAGCTCATCCACGGGCTCGTCGCCGGAAATCGCACACATCGC
TGCCCAGGAAATGGACCCCGAGCTTGAGGATCAACAGCAACAACAGCAGC
ACCAAGAGACTTCTGGAGGTAATGGCTTCATCCGACCGGGTGACGTCGGC
ACCGGTTCCAACAGGGGAGGCGGTGACGGCAGTGGCGGCCGCAATTACAA
CCAGCGGAACAACCACAACTCCAGCGGCTACTACCACCAGCAGTACTACG
TGCCACCGCCGATGCAACAGCAGCTGAGCAAGTCCAACTCCTCCTCCAAC
TATCACCAGCAACACCATCACAGCCACAGCCATGGCAATCATAGTCACCG
ACAACAGCATCACCACCAGCAGCAGCACCACCACCAGCAGCGGCCGCAGC
ATCTGCGTGTGGGCGGCGGCAATCGATACCAGAAATCGTTGGGCGGATCG
CCCATCATCAGTGCTGGCAATGCGTCGAACAGCAGCAGTAATTGCAGCAA
CAGCAGCAGCAGCAGCGGCAGCAACAACAGCCGACTGCCGCCGCTAAGGG
GCACGCTGGTCAACTCATCGTCAGCAATATCAATCATTTCCATATCCTCA
GAATCATCCATTGCTAGCAGCAGCTCCAGTTCGTCAAGATCCGGTCAGGA
TCAGCAGCGTGACGAGCGAGCAAGCTTTCTAGACCAT
BO17642.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trf4-1-RJ | 3006 | CG11265-PJ | 1..3003 | 17..3019 | 15015 | 100 | Plus |
| Trf4-1-RI | 3006 | CG11265-PI | 1..3003 | 17..3019 | 15015 | 100 | Plus |
| Trf4-1-RH | 3006 | CG11265-PH | 1..3003 | 17..3019 | 15015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trf4-1-RJ | 6812 | CG11265-RJ | 586..3588 | 17..3019 | 15015 | 100 | Plus |
| Trf4-1-RI | 4238 | CG11265-RI | 551..3553 | 17..3019 | 15015 | 100 | Plus |
| Trf4-1-RH | 3975 | CG11265-RH | 288..3290 | 17..3019 | 15015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8563373..8564377 | 17..1021 | 5025 | 100 | Plus |
| X | 23542271 | X | 8564482..8565166 | 1018..1702 | 3425 | 100 | Plus |
| X | 23542271 | X | 8565376..8566056 | 1700..2380 | 3405 | 100 | Plus |
| X | 23542271 | X | 8566296..8566935 | 2380..3019 | 3200 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2395..3019 | 123..743 | 369 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2578..2986 | 138..532 | 298 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6503..7050 | 142..686 | 283 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2834 | 2339..2896 | 274 | 55.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6944 | 2536..2756 | 274 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2663 | 350..687 | 251 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2292..2644 | 180..538 | 248 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6932 | 350..546 | 243 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2813 | 2407..2883 | 238 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6832..7015 | 352..539 | 236 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2254..2549 | 2567..2858 | 234 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..7058 | 2427..2744 | 231 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..7079 | 350..664 | 222 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..7200 | 2427..2858 | 213 | 54.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7034 | 2430..2756 | 198 | 56.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1180 | 350..463 | 198 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2626..2982 | 2421..2753 | 190 | 56 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..7088 | 2427..2735 | 175 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..7088 | 2427..2717 | 153 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6827 | 2069..2164 | 140 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6900 | 2069..2162 | 122 | 63.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1179 | 353..422 | 121 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6932 | 2070..2173 | 119 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1584 | 349..377 | 118 | 89.7 | Plus |
| TART-A | 13424 | TART-A 13424bp | 909..937 | 349..377 | 118 | 89.7 | Plus |
| TART-A | 13424 | TART-A 13424bp | 12087..12115 | 349..377 | 118 | 89.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1560..1591 | 350..382 | 117 | 87.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1088..1141 | 2405..2458 | 117 | 68.5 | Plus |
BO17642.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:24 Download gff for
BO17642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11265-RE | 400..3402 | 17..3021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:17 Download gff for
BO17642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf4-1-RH | 288..3290 | 17..3021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:55 Download gff for
BO17642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf4-1-RH | 288..3290 | 17..3021 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:55 Download gff for
BO17642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8563373..8564375 | 17..1019 | 100 | -> | Plus |
| X | 8564484..8565164 | 1020..1700 | 100 | -> | Plus |
| X | 8565377..8566056 | 1701..2380 | 100 | -> | Plus |
| X | 8566297..8566935 | 2381..3021 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:17 Download gff for
BO17642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8457406..8458408 | 17..1019 | 100 | -> | Plus |
| arm_X | 8458517..8459197 | 1020..1700 | 100 | -> | Plus |
| arm_X | 8459410..8460089 | 1701..2380 | 100 | -> | Plus |
| arm_X | 8460330..8460968 | 2381..3021 | 99 | | Plus |
BO17642.3prime Sequence
829 bp (761 high quality bases) assembled on 2006-10-13
> BO17642.3prime
ATGGTCTAGAAAGCTTGCTCGCTCGTCACGCTGCTGATCCTGACCGGATC
TTGACGAACTGGAGCTGCTGCTAGCAATGGATGATTCTGAGGATATGGAA
ATGATTGATATTGCTGACGATGAGTTGACCAGCGTGCCCCTTAGCGGCGG
CAGTCGGCTGTTGTTGCTGCCGCTGCTGCTGCTGCTGTTGCTGCAATTAC
TGCTGCTGTTCGACGCATTGCCAGCACTGATGATGGGCGATCCGCCCAAC
GATTTCTGGTATCGATTGCCGCCGCCCACACGCAGATGCTGCGGCCGCTG
CTGGTGGTGGTGCTGCTGCTGGTGGTGATGCTGTTGTCGGTGACTATGAT
TGCCATGGCTGTGGCTGTGATGGTGTTGCTGGTGATAGTTGGAGGAGGAG
TTGGACTTGCTCAGCTGCTGTTGCATCGGCGGTGGCACGTAGTACTGCTG
GTGGTAGTAGCCGCTGGAGTTGTGGTTGTTCCGCTGGTTGTAATTGCGGC
CGCCACTGCCGTCACCGCCTCCCCTGTTGGAACCGGTGCCGACGTCACCC
GGTCGGATGAAGCCATTACCTCCAGAAGTCTCTTGGTGCTGCTGTTGTTG
CTGTTGATCCTCAAGCTCGGGGTCCATTTCCTGGGCAGCGATGTGTGCGA
TTTCCGGCGACGAGCCCGTGGATGAGCTGCTGTTTCCGTTTCCATTGCCA
TTACCGCTCCAACTGTTCGACGCANGCATTCCGACAGCATGCACTGGCAT
GGGCATGGACATGTTGGCCAGGCCATTTGGCGTCGATAGCGCGATGTCAA
CGACCTCCTGAGCACTCGACGTCGTCTCG
BO17642.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11265-PE | 3006 | CG11265-RE | 2193..3003 | 829..19 | 4036 | 99.8 | Minus |
| CG11265-PA | 3090 | CG11265-RA | 2448..3087 | 658..19 | 3200 | 100 | Minus |
| CG11265-PB | 3090 | CG11265-RB | 2448..3087 | 658..19 | 3200 | 100 | Minus |
| CG11265-PC | 3090 | CG11265-RC | 2448..3087 | 658..19 | 3200 | 100 | Minus |
| CG11265-PA | 3090 | CG11265-RA | 2193..2364 | 829..658 | 841 | 99.4 | Minus |
| CG11265-PB | 3090 | CG11265-RB | 2193..2364 | 829..658 | 841 | 99.4 | Minus |
| CG11265-PC | 3090 | CG11265-RC | 2193..2364 | 829..658 | 841 | 99.4 | Minus |
| CG33670-PA | 1344 | CG33670-RA | 214..242 | 327..299 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:28:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trf4-1-RJ | 6812 | CG11265-RJ | 2778..3588 | 829..19 | 4044 | 99.9 | Minus |
| Trf4-1-RI | 4238 | CG11265-RI | 2743..3553 | 829..19 | 4044 | 99.9 | Minus |
| Trf4-1-RH | 3975 | CG11265-RH | 2480..3290 | 829..19 | 4044 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8566296..8566935 | 658..19 | 3200 | 100 | Minus |
| X | 23542271 | X | 8565885..8566056 | 829..658 | 849 | 99.4 | Minus |
Blast to na_te.dros performed 2015-02-05 01:28:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2834 | 699..142 | 274 | 55.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6944 | 502..282 | 274 | 60.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2813 | 631..155 | 238 | 55.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2254..2549 | 471..180 | 234 | 59.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..7058 | 611..294 | 231 | 57.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..7200 | 611..180 | 213 | 54.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7034 | 608..282 | 198 | 56.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2626..2982 | 617..285 | 190 | 56 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..7088 | 611..303 | 175 | 57 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..7088 | 611..321 | 153 | 57.5 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1088..1141 | 633..580 | 117 | 68.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6855 | 710..584 | 115 | 58.3 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1119..1149 | 611..581 | 110 | 83.9 | Minus |
BO17642.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:08 Download gff for
BO17642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11265-PE | 2193..3006 | 18..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:03:13 Download gff for
BO17642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf4-1-RH | 2480..3290 | 19..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:58:18 Download gff for
BO17642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf4-1-RH | 2480..3290 | 19..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:58:18 Download gff for
BO17642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8565885..8566056 | 658..829 | 99 | -> | Minus |
| X | 8566297..8566935 | 19..657 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:03:13 Download gff for
BO17642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8459918..8460089 | 658..829 | 99 | -> | Minus |
| arm_X | 8460330..8460968 | 19..657 | 100 | | Minus |
BO17642.5prime Sequence
784 bp (762 high quality bases) assembled on 2006-10-13
> BO17642.5prime
GAAGTTATCAGTCGACATGGATCCATTTGTTGGCTGGTTTCAGAAGGAAC
AGGAGGGACCATCGCTGTGCACATGGTTAAAGATTTGGGAGACGAATGCC
CAAGAGATGGGCGCATTGCTTAATCAACAGCTACAGCAGGCGACGACGAT
CAACGGGAGCACGAGCAGCAGCAGCAGCAGCAGCAATAGTGGTAACAACA
ACAACAACAACAACAATAACATCATCAATAACACTATCACCAACACGACC
AATAACACTGGTAACAATTCATCGGCCAAACCCTACTTATCGCGACCCTA
CAGCTCGCTAAATCGGGTGCTCAATTTCCGAGCGGATTCCCTGGAGATCC
TGCAGCAGCAACAACAACAGCAGCAGCTCAACGGGACCACTCAGCGCAAC
AGCACCAACATCAATACCACAAGCGGCGGCAGCACTAGCTCGTCGGCAGA
TTCCACCACGAATCGGGACAATAACTCACCCGCCAATAGCAGTTCAACCA
ACGGACCCGGAGCAGGAACGGGAACGTCAACAGGAGCAGGAGGTACCGGT
ACAAATAGTCCGGCGACGACAGCGTCAAGCACAGCTGCGACCACGACTGG
TCCAGCCACTAGTATGAGCGACACCAGCAACAACCCGCCACAATCAACGA
CCACGCCCGCCAGCCGCACGAACAGCATCTACTACAATCCATCGCGGAAG
AAACGACCGGAGAACAAGGCTGGCGGAGCCCACTACTATATGAACAACCA
TATGGAGATGATCGCCAAGTACAAGGGCGAACCG
BO17642.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:58:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11265-PA | 3090 | CG11265-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
| CG11265-PB | 3090 | CG11265-RB | 1..768 | 17..784 | 3840 | 100 | Plus |
| CG11265-PC | 3090 | CG11265-RC | 1..768 | 17..784 | 3840 | 100 | Plus |
| CG11265-PE | 3006 | CG11265-RE | 1..768 | 17..784 | 3840 | 100 | Plus |
| CG14982-PB | 2322 | CG14982-RB | 566..592 | 351..377 | 135 | 100 | Plus |
| CG7029-PA | 5235 | CG7029-RA | 1884..1910 | 352..378 | 135 | 100 | Plus |
| CG17689-PA | 5622 | CG17689-RA | 2504..2530 | 351..377 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trf4-1-RJ | 6812 | CG11265-RJ | 586..1353 | 17..784 | 3840 | 100 | Plus |
| Trf4-1-RI | 4238 | CG11265-RI | 551..1318 | 17..784 | 3840 | 100 | Plus |
| Trf4-1-RH | 3975 | CG11265-RH | 288..1055 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8563373..8564140 | 17..784 | 3840 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 15:37:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2404..3019 | 123..743 | 374 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2578..2986 | 138..532 | 298 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7050 | 354..686 | 281 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2663 | 350..687 | 251 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2292..2644 | 180..538 | 248 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6932 | 350..546 | 243 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6832..7015 | 352..539 | 236 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2666 | 353..650 | 224 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..7079 | 350..664 | 222 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2682 | 350..693 | 200 | 56 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1180 | 350..463 | 198 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6884 | 350..439 | 192 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6953 | 350..493 | 189 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1111..1179 | 352..422 | 125 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1584 | 349..377 | 118 | 89.7 | Plus |
| TART-A | 13424 | TART-A 13424bp | 909..937 | 349..377 | 118 | 89.7 | Plus |
| TART-A | 13424 | TART-A 13424bp | 12087..12115 | 349..377 | 118 | 89.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1560..1591 | 350..382 | 117 | 87.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1602 | 353..422 | 110 | 70.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1136..1166 | 350..380 | 110 | 83.9 | Plus |
BO17642.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:09 Download gff for
BO17642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11265-PB | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:23:44 Download gff for
BO17642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf4-1-RH | 282..1055 | 8..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:17 Download gff for
BO17642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf4-1-RH | 282..1055 | 8..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:17 Download gff for
BO17642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8563367..8564140 | 8..784 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:23:44 Download gff for
BO17642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8457400..8458173 | 8..784 | 99 | | Plus |
BO17642.pep Sequence
Translation from 16 to 3037
> BO17642.pep
MDPFVGWFQKEQEGPSLCTWLKIWETNAQEMGALLNQQLQQATTINGSTS
SSSSSSNSGNNNNNNNNNIINNTITNTTNNTGNNSSAKPYLSRPYSSLNR
VLNFRADSLEILQQQQQQQQLNGTTQRNSTNINTTSGGSTSSSADSTTNR
DNNSPANSSSTNGPGAGTGTSTGAGGTGTNSPATTASSTAATTTGPATSM
SDTSNNPPQSTTTPASRTNSIYYNPSRKKRPENKAGGAHYYMNNHMEMIA
KYKGEPWRKPDYPYGEGVIGLHEEIEHFYQYVLPTPCEHAIRNEVVKRIE
AVVHSIWPQAVVEIFGSFRTGLFLPTSDIDLVVLGLWEKLPLRTLEFELV
SRGIAEACTVRVLDKASVPIIKLTDRETQVKVDISFNMQSGVQSAELIKK
FKRDYPVLEKLVLVLKQFLLLRDLNEVFTGGISSYSLILMCISFLQMHPR
GIYHDTANLGVLLLEFFELYGRRFNYMKIGISIKNGGRYMPKDELQRDMV
DGHRPSLLCIEDPLTPGNDIGRSSYGVFQVQQAFKCAYRVLALAVSPLNL
LGIDPRVNSILGRIIHITDDVIDYREWIRENFEHLVVVDRISPLPTAAPT
AYATANGAPKYVIMPSGAVVQQLYHHPVQVPTAHGHSHAHSHSHGHAHPG
AHLCQPYVTGTTVSAVTTTTTMAVVTVGVSAGGVQQQQQQQNATAHTHSQ
QQTQNQSQSRHRRGSTSSGDDSEDSKDGDVVETTSSAQEVVDIALSTPNG
LANMSMPMPVHAVGMPASNSWSGNGNGNGNSSSSTGSSPEIAHIAAQEMD
PELEDQQQQQQHQETSGGNGFIRPGDVGTGSNRGGGDGSGGRNYNQRNNH
NSSGYYHQQYYVPPPMQQQLSKSNSSSNYHQQHHHSHSHGNHSHRQQHHH
QQQHHHQQRPQHLRVGGGNRYQKSLGGSPIISAGNASNSSSNCSNSSSSS
GSNNSRLPPLRGTLVNSSSAISIISISSESSIASSSSSSSRSGQDQQRDE
RASFLDH
BO17642.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:15:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trf4-1-PJ | 1001 | CG11265-PJ | 1..1001 | 1..1001 | 5248 | 100 | Plus |
| Trf4-1-PI | 1001 | CG11265-PI | 1..1001 | 1..1001 | 5248 | 100 | Plus |
| Trf4-1-PH | 1001 | CG11265-PH | 1..1001 | 1..1001 | 5248 | 100 | Plus |
| Trf4-1-PE | 1001 | CG11265-PE | 1..1001 | 1..1001 | 5248 | 100 | Plus |
| Trf4-1-PC | 1001 | CG11265-PC | 1..1001 | 1..1001 | 5248 | 100 | Plus |
