Clone Sequence Records
BO17643.3prime Sequence
637 bp (605 high quality bases) assembled on 2006-10-13
> BO17643.3prime
ATGGTCTAGAAAGCTTGCAGTAATTTTGAAATTACTAGCAGAGGTATTTA
AATCATAAGACCCAGAGTGAAAGGGCATTAAAGCATTAAATATATAAAGT
AATTTACCCTGCCCATTTTGCTTGTTGAACTGCTTAATCAAACGCCTCTT
CTTAGAGGACTCCGGCATGCTCTGGATATGGGCATAAAGTTGCGCCAGCT
CCGTGTCCGTATTGTTCGTATTGGTGGCCGCTGCAGTGGCGGCTCGGTCT
ACAAAAGTGTACACCGTGTTGACCGTCGAGACGTCCGAGATGGACTCGTC
AAGCGTTTGTTCCGGCGACATGGTTTTCTTTCTTTTGCGCTCGAGAAAGT
ACGCCCGGATGTCGGTAGACAGCTTTCCAGGCACCTCGAAGATGTCCAGT
CCACGGACGATCATATAGGTCACGATGCTGGACATTTTCTTGGCCTGGTA
GTGCAGGACCTCGGGTGGCAGTTGCCTTGGGCAAATTAGGTGCGGTGTGA
AGAGAGTGGCCAAGTTATCGGCGCTCATCTTGTTGCTTTTCTCATGCTTG
GCCACAGCATGCAGCATCTCAATGATGTGCTGAAGAAGTTCACGATGTTC
TTCGGGCAGGAGGAGAAGTAGCAGCTGCACGGAGTTG
BO17643.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6477-PB | 1275 | RhoGAP54D-RB | 654..1272 | 637..19 | 3095 | 100 | Minus |
| CG6477-PA | 3015 | RhoGAP54D-RA | 654..1184 | 637..107 | 2655 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP54D-RC | 3595 | CG6477-RC | 988..1518 | 637..107 | 2655 | 100 | Minus |
| RhoGAP54D-RA | 3791 | CG6477-RA | 1184..1714 | 637..107 | 2655 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:54:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17588965..17589583 | 19..637 | 3095 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:54:10 has no hits.
BO17643.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:09 Download gff for
BO17643.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6477-PB | 654..1275 | 16..637 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:29 Download gff for
BO17643.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP54D-RA | 1184..1714 | 107..637 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:20 Download gff for
BO17643.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP54D-RA | 1184..1714 | 107..637 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:20 Download gff for
BO17643.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17588959..17589583 | 11..637 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:29 Download gff for
BO17643.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13476464..13477088 | 11..637 | 99 | | Plus |
BO17643.5prime Sequence
701 bp (699 high quality bases) assembled on 2006-10-13
> BO17643.5prime
GAAGTTATCAGTCGACATGGAAGCAACGATGGATACGGACCATGCGAACC
TAAATGACTTCAGGGATCGCGATCTGGCCACGCGCATGCGCCGCTGCAAT
TACGAAAAATACAAATCCTTGGTGCGCATGCACCTATCGTTTGAATTGGA
GCTCAATACGGATGAATTCGATCTCCCCTGTCACGAGATTGTCTACGAGG
ACAAGGGCAAGCTGAAGAAGTGGAACCGCCTGTCTAAAAAACATCGTTTG
GGACATGGAGCAGCTGCCACATCCTGTGCCGCCGGCTCCGCCAGTAAATC
CGTGGGTAATAGTCCCACAGAGACACTGCAACAGCAGATTGATCCGGGAT
TCTTAATGCATCTGCAAGAGCTCAAGGAGTTCCTAATGCTGGAGAAGAAT
CTCACCCAGGAAGGCCTATTCCGCAAGGCTGGTGCGGTGTCCCGACAAAA
CGAACTTCGGATGCACATCCAGCACGACAAACCACTGAATTTGGAACTTG
CGGGCTTCTCCGCTCACGATTGCGCGACCGTTTTCAAAGGTTTTCTATCC
GAACTTCCAGAACCGCTGCTTACGGATGCCCACTATCCGGCGCATCTGCA
GATAGCCCCACTCTGCCAGGCGCTCAATGGTCAGACGACTGCCACTGCTG
AGCGTCAACAACATCTTCTCAACTCCGTGCAGCTGCTACTTCTCCTCCTG
C
BO17643.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6477-PA | 3015 | RhoGAP54D-RA | 1..685 | 17..701 | 3425 | 100 | Plus |
| CG6477-PB | 1275 | RhoGAP54D-RB | 1..685 | 17..701 | 3425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:41:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP54D-RC | 3595 | CG6477-RC | 334..1019 | 16..701 | 3430 | 100 | Plus |
| RhoGAP54D-RA | 3791 | CG6477-RA | 530..1215 | 16..701 | 3430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:41:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17589552..17589854 | 701..399 | 1515 | 100 | Minus |
| 2R | 25286936 | 2R | 17589908..17590140 | 398..166 | 1165 | 100 | Minus |
| 2R | 25286936 | 2R | 17590206..17590355 | 165..16 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:41:39 has no hits.
BO17643.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:10 Download gff for
BO17643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6477-PB | 1..685 | 17..701 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:27:28 Download gff for
BO17643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP54D-RA | 523..1215 | 9..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:35 Download gff for
BO17643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP54D-RA | 523..1215 | 9..701 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:35 Download gff for
BO17643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17589552..17589854 | 399..701 | 100 | <- | Minus |
| 2R | 17589908..17590140 | 166..398 | 100 | <- | Minus |
| 2R | 17590206..17590362 | 9..165 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:27:28 Download gff for
BO17643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13477057..13477359 | 399..701 | 100 | <- | Minus |
| arm_2R | 13477413..13477645 | 166..398 | 100 | <- | Minus |
| arm_2R | 13477711..13477867 | 9..165 | 98 | | Minus |
BO17643.complete Sequence
1306 bp assembled on 2006-10-11
GenBank Submission: FJ634186
> BO17643.complete
GAAGTTATCAGTCGACATGGAAGCAACGATGGATACGGACCATGCGAACC
TAAATGACTTCAGGGATCGCGATCTGGCCACGCGCATGCGCCGCTGCAAT
TACGAAAAATACAAATCCTTGGTGCGCATGCACCTATCGTTTGAATTGGA
GCTCAATACGGATGAATTCGATCTCCCCTGTCACGAGATTGTCTACGAGG
ACAAGGGCAAGCTGAAGAAGTGGAACCGCCTGTCTAAAAAACATCGTTTG
GGACATGGAGCAGCTGCCACATCCTGTGCCGCCGGCTCCGCCAGTAAATC
CGTGGGTAATAGTCCCACAGAGACACTGCAACAGCAGATTGATCCGGGAT
TCTTAATGCATCTGCAAGAGCTCAAGGAGTTCCTAATGCTGGAGAAGAAT
CTCACCCAGGAAGGCCTATTCCGCAAGGCTGGTGCGGTGTCCCGACAAAA
CGAACTTCGGATGCACATCCAGCACGACAAACCACTGAATTTGGAACTTG
CGGGCTTCTCCGCTCACGATTGCGCGACCGTTTTCAAAGGTTTTCTATCC
GAACTTCCAGAACCGCTGCTTACGGATGCCCACTATCCGGCGCATCTGCA
GATAGCCCCACTCTGCCAGGCGCTCAATGGTCAGACGACTGCCACTGCTG
AGCGTCAACAACATCTTCTCAACTCCGTGCAGCTGCTACTTCTCCTCCTG
CCCGAAGAACATCGTGAACTTCTTCAGCACATCATTGAGATGCTGCATGC
TGTGGCCAAGCATGAGAAAAGCAACAAGATGAGCGCCGATAACTTGGCCA
CTCTCTTCACACCGCACCTAATTTGCCCAAGGCAACTGCCACCCGAGGTC
CTGCACTACCAGGCCAAGAAAATGTCCAGCATCGTGACCTATATGATCGT
CCGTGGACTGGACATCTTCGAGGTGCCTGGAAAGCTGTCTACCGACATCC
GGGCGTACTTTCTCGAGCGCAAAAGAAAGAAAACCATGTCGCCGGAACAA
ACGCTTGACGAGTCCATCTCGGACGTCTCGACGGTCAACACGGTGTACAC
TTTTGTAGACCGAGCCGCCACTGCAGCGGCCACCAATACGAACAATACGG
ACACGGAGCTGGCGCAACTTTATGCCCATATCCAGAGCATGCCGGAGTCC
TCTAAGAAGAGGCGTTTGATTAAGCAGTTCAACAAGCAAAATGGGCAGGG
TAAATTACTTTATATATTTAATGCTTTAATGCCCTTTCACTCTGGGTCTT
ATGATTTAAATACCTCTGCTAGTAATTTCAAAATTACTGCAAGCTTTCTA
GACCAT
BO17643.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:06:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP54D-RC | 3015 | CG6477-PC | 1..1184 | 17..1200 | 5920 | 100 | Plus |
| RhoGAP54D-RA | 3015 | CG6477-PA | 1..1184 | 17..1200 | 5920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP54D-RC | 3595 | CG6477-RC | 334..1518 | 16..1200 | 5925 | 100 | Plus |
| RhoGAP54D-RA | 3791 | CG6477-RA | 530..1714 | 16..1200 | 5925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17588965..17589854 | 1288..399 | 4450 | 100 | Minus |
| 2R | 25286936 | 2R | 17589908..17590140 | 398..166 | 1165 | 100 | Minus |
| 2R | 25286936 | 2R | 17590206..17590355 | 165..16 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:06:03 has no hits.
BO17643.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:57 Download gff for
BO17643.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP54D-RB | 1..1275 | 17..1291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:41 Download gff for
BO17643.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP54D-RB | 521..1806 | 9..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:16 Download gff for
BO17643.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP54D-RA | 531..1714 | 17..1200 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:57 Download gff for
BO17643.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP54D-RB | 521..1806 | 9..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:59 Download gff for
BO17643.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP54D-RA | 531..1714 | 17..1200 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:59 Download gff for
BO17643.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17588962..17589854 | 399..1290 | 99 | <- | Minus |
| 2R | 17589908..17590140 | 166..398 | 100 | <- | Minus |
| 2R | 17590206..17590354 | 17..165 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:16 Download gff for
BO17643.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13477413..13477645 | 166..398 | 100 | <- | Minus |
| arm_2R | 13476467..13477359 | 399..1290 | 99 | <- | Minus |
| arm_2R | 13477711..13477859 | 17..165 | 100 | | Minus |
BO17643.pep Sequence
Translation from 16 to 1306
> BO17643.pep
MEATMDTDHANLNDFRDRDLATRMRRCNYEKYKSLVRMHLSFELELNTDE
FDLPCHEIVYEDKGKLKKWNRLSKKHRLGHGAAATSCAAGSASKSVGNSP
TETLQQQIDPGFLMHLQELKEFLMLEKNLTQEGLFRKAGAVSRQNELRMH
IQHDKPLNLELAGFSAHDCATVFKGFLSELPEPLLTDAHYPAHLQIAPLC
QALNGQTTATAERQQHLLNSVQLLLLLLPEEHRELLQHIIEMLHAVAKHE
KSNKMSADNLATLFTPHLICPRQLPPEVLHYQAKKMSSIVTYMIVRGLDI
FEVPGKLSTDIRAYFLERKRKKTMSPEQTLDESISDVSTVNTVYTFVDRA
ATAAATNTNNTDTELAQLYAHIQSMPESSKKRRLIKQFNKQNGQGKLLYI
FNALMPFHSGSYDLNTSASNFKITASFLDH
BO17643.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP54D-PC | 1004 | CG6477-PC | 1..400 | 1..400 | 2042 | 99 | Plus |
| RhoGAP54D-PA | 1004 | CG6477-PA | 1..400 | 1..400 | 2042 | 99 | Plus |
| RhoGAP92B-PC | 543 | CG4755-PC | 67..311 | 113..360 | 182 | 27.7 | Plus |
| RhoGAP92B-PD | 648 | CG4755-PD | 172..416 | 113..360 | 182 | 27.7 | Plus |
| conu-PI | 629 | CG17082-PI | 390..583 | 124..319 | 160 | 24.2 | Plus |
