Clone Sequence Records
BO17644.3prime Sequence
704 bp (623 high quality bases) assembled on 2006-10-13
> BO17644.3prime
ATGGTCTAGAAAGCTTGCATAAGAATACTTGAATTCCATACGAAACAAAT
ATTGAATATTGACCTGCGCAACATCATATACTATATACTCGTTATATAAT
AACGATGACTTTAAATGTTCGTCAGTAATGGTTTCTCCGTAAGGAATTTC
AACCCCATCACTTCTTATATAGCTCTTAGTAGGATCTGGCATGGTGCGAC
CACGACCGAAACAACTATGTTTATTATTTGATAGTTTATTAATGTATTTC
GCTGAAGTGCATTCCATCATATCGCCCAAAGCAACTTCAGATAGAAGCAT
TAATCCAGTAGAGTTTTGTTGACTTGTGCAACAATAATTTGCGGATTTTG
AAACCATATCCGCAAAATAAATGCCTTTTCCGAACATATAACCTGTTGGT
GGCGCTTCTGGGGGAGCAATTCTTAAACCATGCGATAATATACCAACAAA
ATTAGTTAAACGTGATCCGTGCCATAATAATTTTCTGTTATGTAGCTTCT
TAAATGGTTTAAAGCGCCTTGCTTCTCCTTGGCGAGATACTTTAAATACA
TCAACAATTTTTAAATCATAAGATTTGTGGGTAGATGCATGAGTGTTTTT
TACGTACTGGCTAAGAATCGAAAATTCTTCACTATTTTTGTCTAATGCCA
CCAACTGAGTTTTAATCTGTGCGTAATGATTATCTAAAGGATTACAAGCA
TCAG
BO17644.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-09 17:58:49 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Parp-RB | 3112 | CG40411-RB | 2372..3057 | 704..19 | 3430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 3461406..3462091 | 19..704 | 3430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:33:50 has no hits.
BO17644.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:54:23 Download gff for
BO17644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Parp-RB | 2373..3068 | 10..704 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:13:03 Download gff for
BO17644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Parp-RB | 2372..3067 | 10..704 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:13:03 Download gff for
BO17644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 3461396..3462091 | 10..704 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:54:23 Download gff for
BO17644.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3RHet | 2026075..2026770 | 10..704 | 99 | | Minus |
BO17644.5prime Sequence
721 bp (591 high quality bases) assembled on 2006-10-13
> BO17644.5prime
GAAGTTATCAGTCGACATGGATATTGAATTACCTTATCTTGCTGAGTATG
CAAGAACTGGACGAGCCACTTGCAAAGGATGTAAAAGTACTATATCTAAA
GATACTCTTCGGATTGCTGTCATGGTTCAATCTGCATTTCATGATGCCAA
AGTTCCGAATTGGTTTCATAAAACCTGCTTTTTTAAAAACCAGCGTCCCA
GCTCAGTAGGAGACATACAAAACATTGGAAATCTCCGATTTGCCGATCAA
AAGGAATTAACGGATCTTGTGGAAAATATACAAGAAGTTATAAGCGCACA
ATTAGGAAAAAAGCGATCGAAGGCTTTTAACTTAGCATTAAAAGACTTTG
GGATTGAATATGCAAAATCTAGTCGATCGACGTGTCGTGGATGTGAACAA
AAAATAAACAAGGATCTAGTTCGCTTACGTAAAACTGTTTATGATACTGA
AGTTGGTATGAAGTACGGAGGCCAACCTTTGTGGCATCATTTGGAATGCT
TCGCCCAATTGCGCTCTGAGCTTGGCTGGTTTGCGTCAGGTGAAGATATG
CCAGGATTTCAGAGCTTAGCAGATGATGATCAAGCGAAAGTTAAAAACGC
CATACCACCAATAAAATCTGAAGAACTACCAGATACAAAAAGAGCTAAGA
TGGAATTATCAGATACAAATGAAGAAGGAGAAAAGAAACAACGCTTAAAA
GATCAAAATGATGCCTACTTC
BO17644.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-09 17:58:58 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Parp-RB | 3112 | CG40411-RB | 76..780 | 17..721 | 3525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 3584980..3585314 | 606..272 | 1675 | 100 | Minus |
| 3R | 32079331 | 3R | 3585369..3585510 | 272..131 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 3523833..3523947 | 721..607 | 575 | 100 | Minus |
| 3R | 32079331 | 3R | 3586866..3586979 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 15:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blood | 7410 | blood BLOOD 7410bp | 6486..6623 | 578..713 | 126 | 58.6 | Plus |
| invader6 | 4885 | invader6 INVADER6 4885bp | 1079..1162 | 347..427 | 115 | 63.1 | Plus |
BO17644.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:37:26 Download gff for
BO17644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Parp-RB | 72..781 | 11..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:26:08 Download gff for
BO17644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Parp-RB | 71..780 | 11..721 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:26:08 Download gff for
BO17644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 3523833..3523947 | 607..721 | 100 | <- | Minus |
| 3R | 3584980..3585313 | 273..606 | 100 | <- | Minus |
| 3R | 3585369..3585510 | 131..272 | 100 | <- | Minus |
| 3R | 3586866..3586984 | 11..130 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:37:26 Download gff for
BO17644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3RHet | 1935276..1935394 | 11..130 | 97 | -> | Plus |
| 3RHet | 1936750..1936891 | 131..272 | 100 | -> | Plus |
| 3RHet | 1936947..1937280 | 273..606 | 100 | -> | Plus |
| 3RHet | 1964215..1964329 | 607..721 | 100 | | Plus |
BO17644.complete Sequence
3016 bp assembled on 2007-10-25
GenBank Submission: FJ634187
> BO17644.complete
GAAGTTATCAGTCGACATGGATATTGAATTACCTTATCTTGCTGAGTATG
CAAGAACTGGACGAGCCACTTGCAAAGGATGTAAAAGTACTATATCTAAA
GATACTCTTCGGATTGCTGTCATGGTTCAATCTGCATTTCATGATGCCAA
AGTTCCGAATTGGTTTCATAAAACCTGCTTTTTTAAAAACCAGCGTCCCA
GCTCAGTAGGAGACATACAAAACATTGGAAATCTCCGATTTGCCGATCAA
AAGGAATTAACGGATCTTGTGGAAAATATACAAGAAGTTATAAGCGCACA
ATTAGGAAAAAAGCGATCGAAGGCTTTTAACTTAGCATTAAAAGACTTTG
GGATTGAATATGCAAAATCTAGTCGATCGACGTGTCGTGGATGTGAACAA
AAAATAAACAAGGATCTAGTTCGCTTACGTAAAACTGTTTATGATACTGA
AGTTGGTATGAAGTACGGAGGCCAACCTTTGTGGCATCATTTGGAATGCT
TCGCCCAATTGCGCTCTGAGCTTGGCTGGTTTGCGTCAGGTGAAGATATG
CCAGGATTTCAGAGCTTAGCAGATGATGATCAAGCGAAAGTTAAAAACGC
CATACCACCAATAAAATCTGAAGAACTACCAGATACAAAAAGAGCTAAGA
TGGAATTATCAGATACAAATGAAGAAGGAGAAAAGAAACAACGCTTAAAA
GATCAAAATGATGCCTACTTCAGGTTTCGCGATGACATTAAAAATAAAAT
GAAGAAGAAAGACATTGATATACTTCTAAAGTTTAATAATCAACAACCTG
TAACTGGTGACACAGAAAAGTTATTTGATCAAACTGCCGATTTACTGACA
TTCGGAGCTATTGAATCATGTTCTGAATGCAACAGCTGTCAGTTTATTGT
TAATAAATCTGGATATATATGTAATGGAAATCATTCTGAGTGGACCAAAT
GTAACAAGCTGCTAAAAGAGCCAACAAGATCGGCATGCATAGTGCCAAAA
GAACTTAAAGCATTATATAATTTTTTGAATACCGTGAAAGAAATTCCATC
TACACGGATCTTTAATAACTTTCCTCCCAATAAAAGTACCTTTTCTAGAA
GTCTTTTGAAAACGAATAAAAACAATGATGTTTTGGTTAGGCCAACAATA
CCTCGTATAAGTCCGCCATTATACAATTTAAAGTTTTCAATTATAGGCTT
AAAGAACCAGCATAAAGAGCTAAGAAAGCGAATAGAAAATTTGGGCGGTA
AATTTGAAGTTAAAATATCGGAAAACACGATAGCAATAATATCAACAGAA
TTAGAAATACAAAAAAAATCCACCCGTATGAAGTTTGCAGAAGAGCTCGG
AATTCATATTGTGCCCATTGAATTTTTAGATTTTGTTGAAGCCGATACAG
AAGGAGCTATTAAATATATAAATAGCACATGTATTTGTAGTTGGGGAACA
GATCCAAAATCCAGAATTCCAAAGGAAACAACAAAAAGTTTAAATTCGAA
CAGTATATATACAAAATCCATGCCAGTATCACGGACATTTAAAGTAAAAG
ATGGCCTAGCTGTTGATCCGGACAGTGGGCTCGAGGACATCGCCCATGTT
TACGTGGACAGTAACAATAAATACAGTGTTGTTCTTGGCTTAACTGACAT
TCAGAGAAATAAGAACTCCTACTACAAAGTTCAGCTTTTAAAAGCGGATA
AAAAGGAGAAATATTGGATTTTTCGTTCATGGGGTCGAATTGGAACAAAT
ATTGGAAACTCAAAACTTGAAGAGTTCGACACGAGCGAGTCTGCAAAAAG
AAATTTTAAAGAAATATATGCAGATAAAACTGGAAATGAATACGAGCAAC
GAGATAACTTTGTTAAAAGAACAGGTCGAATGTACCCAATCGAAATTCAA
TATGATGATGACCAAAAGTTGGTAAAACACGAAAGCCATTTCTTTACTTC
CAAATTAGAGATTTCTGTGCAAAATTTAATAAAGCTGATTTTTGATATTG
ACTCAATGAATAAAACATTGATGGAATTCCATATCGACATGGATAAAATG
CCGCTGGGCAAGCTCAGTGCTCATCAAATCCAATCTGCTTACAGAGTAGT
GAAGGAAATTTATAATGTACTAGAATGTGGTTCCAATACTGCAAAACTTA
TTGATGCAACAAATAGGTTTTATACGTTAATTCCTCATAATTTTGGAGTT
CAATTACCAACATTAATTGAAACACATCAACAAATTGAAGATTTGCGACA
AATGCTTGATTCATTAGCTGAGATAGAGGTTGCGTACAGTATAATCAAAA
GCGAAGATGTATCTGATGCTTGTAATCCTTTAGATAATCATTACGCACAG
ATTAAAACTCAGTTGGTGGCATTAGACAAAAATAGTGAAGAATTTTCGAT
TCTTAGCCAGTACGTAAAAAACACTCATGCATCTACCCACAAATCTTATG
ATTTAAAAATTGTTGATGTATTTAAAGTATCTCGCCAAGGAGAAGCAAGG
CGCTTTAAACCATTTAAGAAGCTACATAACAGAAAATTATTATGGCACGG
ATCACGTTTAACTAATTTTGTTGGTATATTATCGCATGGTTTAAGAATTG
CTCCCCCAGAAGCGCCACCAACAGGTTATATGTTCGGAAAAGGCATTTAT
TTTGCGGATATGGTTTCAAAATCCGCAAATTATTGTTGCACAAGTCAACA
AAACTCTACTGGATTAATGCTTCTATCTGAAGTTGCTTTGGGCGATATGA
TGGAATGCACTTCAGCGAAATACATTAATAAACTATCAAATAATAAACAT
AGTTGTTTCGGTCGTGGTCGCACCATGCCAGATCCTACTAAGAGCTATAT
AAGAAGTGATGGGGTTGAAATTCCTTACGGAGAAACCATTACTGACGAAC
ATTTAAAGTCATCGTTATTATATAACGAGTATATAGTATATGATGTTGCG
CAGGTCAATATTCAATATTTGTTTCGTATGGAATTCAAGTATTCTTATGC
AAGCTTTCTAGACCAT
BO17644.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Parp-RB | 2985 | CG40411-PB | 1..2982 | 17..2998 | 14910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Parp-RB | 3112 | CG40411-RB | 76..3057 | 17..2998 | 14910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 3461406..3462693 | 2998..1711 | 6440 | 100 | Minus |
| 3R | 32079331 | 3R | 3468909..3469480 | 1710..1139 | 2860 | 100 | Minus |
| 3R | 32079331 | 3R | 3523413..3523947 | 1141..607 | 2675 | 100 | Minus |
| 3R | 32079331 | 3R | 3584980..3585314 | 606..272 | 1675 | 100 | Minus |
| 3R | 32079331 | 3R | 3585369..3585510 | 272..131 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 3586866..3586979 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 22:13:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blood | 7410 | blood BLOOD 7410bp | 6486..6623 | 578..713 | 126 | 58.6 | Plus |
BO17644.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:32 Download gff for
BO17644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Parp-RA | 1..2985 | 17..3002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:18 Download gff for
BO17644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Parp-RA | 496..3492 | 11..3007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:09 Download gff for
BO17644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Parp-RB | 77..3058 | 17..3000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:48 Download gff for
BO17644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Parp-RA | 501..3482 | 17..3000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:54 Download gff for
BO17644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Parp-RB | 76..3057 | 17..3000 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:54 Download gff for
BO17644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 3461404..3462693 | 1711..3000 | 99 | <- | Minus |
| 3R | 3468909..3469478 | 1141..1710 | 100 | <- | Minus |
| 3R | 3523414..3523947 | 607..1140 | 100 | <- | Minus |
| 3R | 3584980..3585313 | 273..606 | 100 | <- | Minus |
| 3R | 3585369..3585510 | 131..272 | 100 | <- | Minus |
| 3R | 3586866..3586979 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:09 Download gff for
BO17644.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3RHet | 1935281..1935394 | 17..130 | 100 | -> | Plus |
| 3RHet | 1936750..1936891 | 131..272 | 100 | -> | Plus |
| 3RHet | 1936947..1937280 | 273..606 | 100 | -> | Plus |
| 3RHet | 1964215..1964748 | 607..1140 | 100 | -> | Plus |
| 3RHet | 2018688..2019257 | 1141..1710 | 100 | -> | Plus |
| 3RHet | 2025473..2026760 | 1711..3000 | 99 | | Plus |
BO17644.pep Sequence
Translation from 16 to 3016
> BO17644.pep
MDIELPYLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKVPNWF
HKTCFFKNQRPSSVGDIQNIGNLRFADQKELTDLVENIQEVISAQLGKKR
SKAFNLALKDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKY
GGQPLWHHLECFAQLRSELGWFASGEDMPGFQSLADDDQAKVKNAIPPIK
SEELPDTKRAKMELSDTNEEGEKKQRLKDQNDAYFRFRDDIKNKMKKKDI
DILLKFNNQQPVTGDTEKLFDQTADLLTFGAIESCSECNSCQFIVNKSGY
ICNGNHSEWTKCNKLLKEPTRSACIVPKELKALYNFLNTVKEIPSTRIFN
NFPPNKSTFSRSLLKTNKNNDVLVRPTIPRISPPLYNLKFSIIGLKNQHK
ELRKRIENLGGKFEVKISENTIAIISTELEIQKKSTRMKFAEELGIHIVP
IEFLDFVEADTEGAIKYINSTCICSWGTDPKSRIPKETTKSLNSNSIYTK
SMPVSRTFKVKDGLAVDPDSGLEDIAHVYVDSNNKYSVVLGLTDIQRNKN
SYYKVQLLKADKKEKYWIFRSWGRIGTNIGNSKLEEFDTSESAKRNFKEI
YADKTGNEYEQRDNFVKRTGRMYPIEIQYDDDQKLVKHESHFFTSKLEIS
VQNLIKLIFDIDSMNKTLMEFHIDMDKMPLGKLSAHQIQSAYRVVKEIYN
VLECGSNTAKLIDATNRFYTLIPHNFGVQLPTLIETHQQIEDLRQMLDSL
AEIEVAYSIIKSEDVSDACNPLDNHYAQIKTQLVALDKNSEEFSILSQYV
KNTHASTHKSYDLKIVDVFKVSRQGEARRFKPFKKLHNRKLLWHGSRLTN
FVGILSHGLRIAPPEAPPTGYMFGKGIYFADMVSKSANYCCTSQQNSTGL
MLLSEVALGDMMECTSAKYINKLSNNKHSCFGRGRTMPDPTKSYIRSDGV
EIPYGETITDEHLKSSLLYNEYIVYDVAQVNIQYLFRMEFKYSYASFLDH
BO17644.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Parp-PB | 994 | CG40411-PB | 1..994 | 1..994 | 5199 | 100 | Plus |
