Clone Sequence Records
BO17655.3prime Sequence
847 bp (740 high quality bases) assembled on 2006-10-13
> BO17655.3prime
ATGGTCTAGAAAGCTTGCAATGTATTGAGGTACAAGTGGACTAGAATGGT
TCCCTACCCATCCCATTGCTTCGCCCAATTTCTTCAGCAATTTGGCAGCT
CGACGGTCGGGATTTAGGGAATTCACCCACGCAATCAAGTCAAGCAACCG
TTTGATGCCAATGGAGACGTTGCGGCCATCCATGGCGATCTCGATTTGGC
GTAGCTCCTCGGGCTCGAATCGTTTTGAAGCTTCCACTATGACCATAAGT
TCTTTAGGCGTGGAAACATTTGGCACATTGTGAACTGAAGTGAAAACGGA
TAGCAAGCCCAGTTCCTCCAGGACATCGAGACGATTGCTTGTGCAAATGA
TGATGAGCTCGTGGCTGTTGGGCGGTTGTTTCTTCAGAAGAACCGTCAGC
TTCTGCAGGAACTCCTTGGAGTACCGCTTACCCAGGGCGCCGTAACCAAT
GACACGCTCAAAGTCGTCAATGATGACGCAGCTGCGCCTGGAAACATAGG
CGTCCTCCAAGACTTCCCGTATTCTCTGGCATTTTTCGGAATCGCTAAGT
CCCAGCAATTCGGCCGACGAGATGTATTTTATAAAAGGGCAGTCTGTTTT
CAAAGCCATTTGAGCGGCCACCGTAGTTAGGCCTGACTTGGGCTTACCTT
CGACCAGATGGCAAGACCATCTTGGGCGTCCGGTGGACAGGAGATCATTC
GGATCGGAAGCGGTACGATCTAGATATTCATATGGCATTGAGCAGCTGGA
GAGTCTCCTCCTGCCCGCCAAATCGTGGCTGAATGATCTTTACCGCGGCC
AGGAAATCGACCTGAGTGACTTGAAAGGCCCTTCGGGCATCTGGTGA
BO17655.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31495-PA | 1026 | CG31495-RA | 304..1023 | 738..19 | 3575 | 99.8 | Minus |
CG31495-PA | 1026 | CG31495-RA | 218..304 | 825..739 | 385 | 97.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31495-RB | 1500 | CG31495-RB | 332..1158 | 847..19 | 4050 | 99.4 | Minus |
CG31495-RA | 1695 | CG31495-RA | 332..1158 | 847..19 | 4050 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13838777..13839603 | 19..847 | 4000 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:10:43 has no hits.
BO17655.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:15 Download gff for
BO17655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31495-PA | 198..1026 | 15..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:19 Download gff for
BO17655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31495-RA | 329..1163 | 10..846 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:42 Download gff for
BO17655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31495-RA | 333..1167 | 10..846 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:42 Download gff for
BO17655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13838768..13839602 | 10..846 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:19 Download gff for
BO17655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9664490..9665324 | 10..846 | 98 | | Plus |
BO17655.5prime Sequence
841 bp (737 high quality bases) assembled on 2006-10-13
> BO17655.5prime
GAAGTTATCAGTCGACATGGTCAACATCACTTTACCCAACACTGAGGAGC
GTGTGAACCTCTTAAAATCGCGCATCAACAGGCTGGGTGACATTACGGTG
GCCGGCGATGTTTGCGCACGCGAAATTGCAATGAAAACCAAAAATTTCAC
GGAGGACGAGCTGTGCCAACTGGTCCGAGAAGCCCTCCATGAAGCCATTG
TCCGCACTCACGTCACCAGATGCCCGAAGGGCCTTCAAGTCACTCAGGTC
GATCTCCTGGCCGCGGTAAAGATCATTCAGCCACGATTTGGCCGGCAGGA
GGAGACTCTCCAGCTGCTCATGCCATATGAATATCTAGATCGTACCGCTT
TCGATCCGAATGATCTCCTGTCCACCGGACGCCCAAGATGGTCTTGCCAT
CTGGTCGAAGGTAAGCCCAAGTCAGGCCTAACTACGGTGGCCGCTCAAAT
GGCTTTGAAAACAGACTGCCCTTTTATAAAATACATCTCGTCGGCCGAAT
TGCTGGGACTTAGCGATTCCGAAAAATGCCAGAGAATACGGGAAGTCTTG
GAGGACGCCTATGTTTCCAGGCGCAGCTGCGTCATCATTGACGACTTTGA
GCGTGTCATTGGTTACGGCGCCCTGGGTAAGCGGTACTCCAAGGAGTTCC
TGCAGAAGCTGACGGTTCTTCTGAAGAAACAACCGCCCAACAGCCACGAG
CTCATCATCATTTGCACAAGCAATCGTCTCGATGTCCTGGAGGAACTGGG
CTTGCTATCCGTTTTCACTTCAGTTCACAATGTGCCCAATGTTTCCACGC
CTAAAGAACTTATGGTCATAGTGGAAGCTTCAAAACGATTC
BO17655.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31495-PA | 1026 | CG31495-RA | 1..825 | 17..841 | 4100 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:10:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31495-RB | 1500 | CG31495-RB | 136..960 | 17..841 | 4110 | 99.9 | Plus |
CG31495-RA | 1695 | CG31495-RA | 136..960 | 17..841 | 4110 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13838975..13839799 | 841..17 | 4110 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:10:13 has no hits.
BO17655.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:16 Download gff for
BO17655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31495-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:51 Download gff for
BO17655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31495-RA | 132..956 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:09:03 Download gff for
BO17655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31495-RA | 136..960 | 17..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:09:03 Download gff for
BO17655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13838975..13839799 | 17..841 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:51 Download gff for
BO17655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9664697..9665521 | 17..841 | 99 | | Minus |
BO17655.complete Sequence
1057 bp assembled on 2006-10-11
GenBank Submission: FJ634188
> BO17655.complete
GAAGTTATCAGTCGACATGGTCAACATCACTTTACCCAACACTGAGGAGC
GTGTGAACCTCTTAAAATCGCGCATCAACAGGCTGGGTGACATTACGGTG
GCCGGCGATGTTTGCGCACGCGAAATTGCAATGAAAACCAAAAATTTCAC
GGAGGACGAGCTGTGCCAACTGGTCCGAGAAGCCCTCCATGAAGCCATTG
TCCGCACTCACGTCACCAGATGCCCGAAGGGCCTTCAAGTCACTCAGGTC
GATCTCCTGGCCGCGGTAAAGATCATTCAGCCACGATTTGGCCGGCAGGA
GGAGACTCTCCAGCTGCTCATGCCATATGAATATCTAGATCGTACCGCTT
TCGATCCGAATGATCTCCTGTCCACCGGACGCCCAAGATGGTCTTGCCAT
CTGGTCGAAGGTAAGCCCAAGTCAGGCCTAACTACGGTGGCCGCTCAAAT
GGCTTTGAAAACAGACTGCCCTTTTATAAAATACATCTCGTCGGCCGAAT
TGCTGGGACTTAGCGATTCCGAAAAATGCCAGAGAATACGGGAAGTCTTG
GAGGACGCCTATGTTTCCAGGCGCAGCTGCGTCATCATTGACGACTTTGA
GCGTGTCATTGGTTACGGCGCCCTGGGTAAGCGGTACTCCAAGGAGTTCC
TGCAGAAGCTGACGGTTCTTCTGAAGAAACAACCGCCCAACAGCCACGAG
CTCATCATCATTTGCACAAGCAATCGTCTCGATGTCCTGGAGGAACTGGG
CTTGCTATCCGTTTTCACTTCAGTTCACAATGTGCCAAATGTTTCCACGC
CTAAAGAACTTATGGTCATAGTGGAAGCTTCAAAACGATTCGAGCCCGAG
GAGCTACGCCAAATCGAGATCGCCATGGATGGCCGCAACGTCTCCATTGG
CATCAAACGGTTGCTTGACTTGATTGCGTGGGTGAATTCCCTAAATCCCG
ACCGTCGAGCTGCCAAATTGCTGAAGAAATTGGGCGAAGCAATGGGATGG
GTAGGGAACCATTCTAGTCCACTTGTACCTCAATACATTGCAAGCTTTCT
AGACCAT
BO17655.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:23:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31495-RB | 1026 | CG31495-PB | 1..1023 | 17..1039 | 5115 | 100 | Plus |
CG31495-RA | 1026 | CG31495-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:23:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31495-RB | 1500 | CG31495-RB | 136..1158 | 17..1039 | 5115 | 100 | Plus |
CG31495-RA | 1695 | CG31495-RA | 136..1158 | 17..1039 | 5115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:23:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13838777..13839799 | 1039..17 | 5115 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:23:22 has no hits.
BO17655.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:58 Download gff for
BO17655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31495-RA | 1..1026 | 17..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:42 Download gff for
BO17655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31495-RA | 132..1163 | 17..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:45 Download gff for
BO17655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31495-RA | 132..1154 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:58 Download gff for
BO17655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31495-RA | 132..1163 | 17..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:52 Download gff for
BO17655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31495-RA | 136..1158 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:52 Download gff for
BO17655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13838775..13839799 | 17..1041 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:45 Download gff for
BO17655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9664497..9665521 | 17..1041 | 99 | | Minus |
BO17655.pep Sequence
Translation from 16 to 1057
> BO17655.pep
MVNITLPNTEERVNLLKSRINRLGDITVAGDVCAREIAMKTKNFTEDELC
QLVREALHEAIVRTHVTRCPKGLQVTQVDLLAAVKIIQPRFGRQEETLQL
LMPYEYLDRTAFDPNDLLSTGRPRWSCHLVEGKPKSGLTTVAAQMALKTD
CPFIKYISSAELLGLSDSEKCQRIREVLEDAYVSRRSCVIIDDFERVIGY
GALGKRYSKEFLQKLTVLLKKQPPNSHELIIICTSNRLDVLEELGLLSVF
TSVHNVPNVSTPKELMVIVEASKRFEPEELRQIEIAMDGRNVSIGIKRLL
DLIAWVNSLNPDRRAAKLLKKLGEAMGWVGNHSSPLVPQYIASFLDH
BO17655.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31495-PB | 341 | CG31495-PB | 1..341 | 1..341 | 1738 | 100 | Plus |
CG31495-PA | 341 | CG31495-PA | 1..341 | 1..341 | 1738 | 100 | Plus |
Nsf2-PC | 752 | CG33101-PC | 398..743 | 2..327 | 573 | 39.9 | Plus |
Nsf2-PB | 752 | CG33101-PB | 398..743 | 2..327 | 573 | 39.9 | Plus |
Nsf2-PA | 752 | CG33101-PA | 398..743 | 2..327 | 573 | 39.9 | Plus |