Clone BO17655 Report

Search the DGRC for BO17655

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:176
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG31495-RA
Protein status:BO17655.pep: validated full length
Sequenced Size:1057

Clone Sequence Records

BO17655.3prime Sequence

847 bp (740 high quality bases) assembled on 2006-10-13

> BO17655.3prime
ATGGTCTAGAAAGCTTGCAATGTATTGAGGTACAAGTGGACTAGAATGGT
TCCCTACCCATCCCATTGCTTCGCCCAATTTCTTCAGCAATTTGGCAGCT
CGACGGTCGGGATTTAGGGAATTCACCCACGCAATCAAGTCAAGCAACCG
TTTGATGCCAATGGAGACGTTGCGGCCATCCATGGCGATCTCGATTTGGC
GTAGCTCCTCGGGCTCGAATCGTTTTGAAGCTTCCACTATGACCATAAGT
TCTTTAGGCGTGGAAACATTTGGCACATTGTGAACTGAAGTGAAAACGGA
TAGCAAGCCCAGTTCCTCCAGGACATCGAGACGATTGCTTGTGCAAATGA
TGATGAGCTCGTGGCTGTTGGGCGGTTGTTTCTTCAGAAGAACCGTCAGC
TTCTGCAGGAACTCCTTGGAGTACCGCTTACCCAGGGCGCCGTAACCAAT
GACACGCTCAAAGTCGTCAATGATGACGCAGCTGCGCCTGGAAACATAGG
CGTCCTCCAAGACTTCCCGTATTCTCTGGCATTTTTCGGAATCGCTAAGT
CCCAGCAATTCGGCCGACGAGATGTATTTTATAAAAGGGCAGTCTGTTTT
CAAAGCCATTTGAGCGGCCACCGTAGTTAGGCCTGACTTGGGCTTACCTT
CGACCAGATGGCAAGACCATCTTGGGCGTCCGGTGGACAGGAGATCATTC
GGATCGGAAGCGGTACGATCTAGATATTCATATGGCATTGAGCAGCTGGA
GAGTCTCCTCCTGCCCGCCAAATCGTGGCTGAATGATCTTTACCGCGGCC
AGGAAATCGACCTGAGTGACTTGAAAGGCCCTTCGGGCATCTGGTGA

BO17655.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG31495-PA 1026 CG31495-RA 304..1023 738..19 3575 99.8 Minus
CG31495-PA 1026 CG31495-RA 218..304 825..739 385 97.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG31495-RB 1500 CG31495-RB 332..1158 847..19 4050 99.4 Minus
CG31495-RA 1695 CG31495-RA 332..1158 847..19 4050 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13838777..13839603 19..847 4000 99.4 Plus
Blast to na_te.dros performed on 2015-02-10 18:10:43 has no hits.

BO17655.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:15 Download gff for BO17655.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31495-PA 198..1026 15..846 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:19 Download gff for BO17655.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 329..1163 10..846 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:42 Download gff for BO17655.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 333..1167 10..846 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:42 Download gff for BO17655.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13838768..13839602 10..846 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:19 Download gff for BO17655.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9664490..9665324 10..846 98   Plus

BO17655.5prime Sequence

841 bp (737 high quality bases) assembled on 2006-10-13

> BO17655.5prime
GAAGTTATCAGTCGACATGGTCAACATCACTTTACCCAACACTGAGGAGC
GTGTGAACCTCTTAAAATCGCGCATCAACAGGCTGGGTGACATTACGGTG
GCCGGCGATGTTTGCGCACGCGAAATTGCAATGAAAACCAAAAATTTCAC
GGAGGACGAGCTGTGCCAACTGGTCCGAGAAGCCCTCCATGAAGCCATTG
TCCGCACTCACGTCACCAGATGCCCGAAGGGCCTTCAAGTCACTCAGGTC
GATCTCCTGGCCGCGGTAAAGATCATTCAGCCACGATTTGGCCGGCAGGA
GGAGACTCTCCAGCTGCTCATGCCATATGAATATCTAGATCGTACCGCTT
TCGATCCGAATGATCTCCTGTCCACCGGACGCCCAAGATGGTCTTGCCAT
CTGGTCGAAGGTAAGCCCAAGTCAGGCCTAACTACGGTGGCCGCTCAAAT
GGCTTTGAAAACAGACTGCCCTTTTATAAAATACATCTCGTCGGCCGAAT
TGCTGGGACTTAGCGATTCCGAAAAATGCCAGAGAATACGGGAAGTCTTG
GAGGACGCCTATGTTTCCAGGCGCAGCTGCGTCATCATTGACGACTTTGA
GCGTGTCATTGGTTACGGCGCCCTGGGTAAGCGGTACTCCAAGGAGTTCC
TGCAGAAGCTGACGGTTCTTCTGAAGAAACAACCGCCCAACAGCCACGAG
CTCATCATCATTTGCACAAGCAATCGTCTCGATGTCCTGGAGGAACTGGG
CTTGCTATCCGTTTTCACTTCAGTTCACAATGTGCCCAATGTTTCCACGC
CTAAAGAACTTATGGTCATAGTGGAAGCTTCAAAACGATTC

BO17655.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31495-PA 1026 CG31495-RA 1..825 17..841 4100 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31495-RB 1500 CG31495-RB 136..960 17..841 4110 99.9 Plus
CG31495-RA 1695 CG31495-RA 136..960 17..841 4110 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13838975..13839799 841..17 4110 99.9 Minus
Blast to na_te.dros performed on 2015-01-30 18:10:13 has no hits.

BO17655.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:16 Download gff for BO17655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31495-PA 1..825 17..841 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:51 Download gff for BO17655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 132..956 17..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:09:03 Download gff for BO17655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 136..960 17..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:09:03 Download gff for BO17655.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13838975..13839799 17..841 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:51 Download gff for BO17655.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9664697..9665521 17..841 99   Minus

BO17655.complete Sequence

1057 bp assembled on 2006-10-11

GenBank Submission: FJ634188

> BO17655.complete
GAAGTTATCAGTCGACATGGTCAACATCACTTTACCCAACACTGAGGAGC
GTGTGAACCTCTTAAAATCGCGCATCAACAGGCTGGGTGACATTACGGTG
GCCGGCGATGTTTGCGCACGCGAAATTGCAATGAAAACCAAAAATTTCAC
GGAGGACGAGCTGTGCCAACTGGTCCGAGAAGCCCTCCATGAAGCCATTG
TCCGCACTCACGTCACCAGATGCCCGAAGGGCCTTCAAGTCACTCAGGTC
GATCTCCTGGCCGCGGTAAAGATCATTCAGCCACGATTTGGCCGGCAGGA
GGAGACTCTCCAGCTGCTCATGCCATATGAATATCTAGATCGTACCGCTT
TCGATCCGAATGATCTCCTGTCCACCGGACGCCCAAGATGGTCTTGCCAT
CTGGTCGAAGGTAAGCCCAAGTCAGGCCTAACTACGGTGGCCGCTCAAAT
GGCTTTGAAAACAGACTGCCCTTTTATAAAATACATCTCGTCGGCCGAAT
TGCTGGGACTTAGCGATTCCGAAAAATGCCAGAGAATACGGGAAGTCTTG
GAGGACGCCTATGTTTCCAGGCGCAGCTGCGTCATCATTGACGACTTTGA
GCGTGTCATTGGTTACGGCGCCCTGGGTAAGCGGTACTCCAAGGAGTTCC
TGCAGAAGCTGACGGTTCTTCTGAAGAAACAACCGCCCAACAGCCACGAG
CTCATCATCATTTGCACAAGCAATCGTCTCGATGTCCTGGAGGAACTGGG
CTTGCTATCCGTTTTCACTTCAGTTCACAATGTGCCAAATGTTTCCACGC
CTAAAGAACTTATGGTCATAGTGGAAGCTTCAAAACGATTCGAGCCCGAG
GAGCTACGCCAAATCGAGATCGCCATGGATGGCCGCAACGTCTCCATTGG
CATCAAACGGTTGCTTGACTTGATTGCGTGGGTGAATTCCCTAAATCCCG
ACCGTCGAGCTGCCAAATTGCTGAAGAAATTGGGCGAAGCAATGGGATGG
GTAGGGAACCATTCTAGTCCACTTGTACCTCAATACATTGCAAGCTTTCT
AGACCAT

BO17655.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31495-RB 1026 CG31495-PB 1..1023 17..1039 5115 100 Plus
CG31495-RA 1026 CG31495-PA 1..1023 17..1039 5115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31495-RB 1500 CG31495-RB 136..1158 17..1039 5115 100 Plus
CG31495-RA 1695 CG31495-RA 136..1158 17..1039 5115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13838777..13839799 1039..17 5115 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:23:22 has no hits.

BO17655.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:58 Download gff for BO17655.complete
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 1..1026 17..1043 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:42 Download gff for BO17655.complete
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 132..1163 17..1048 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:45 Download gff for BO17655.complete
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 132..1154 17..1041 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:58 Download gff for BO17655.complete
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 132..1163 17..1048 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:52 Download gff for BO17655.complete
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 136..1158 17..1041 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:52 Download gff for BO17655.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13838775..13839799 17..1041 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:45 Download gff for BO17655.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9664497..9665521 17..1041 99   Minus

BO17655.pep Sequence

Translation from 16 to 1057

> BO17655.pep
MVNITLPNTEERVNLLKSRINRLGDITVAGDVCAREIAMKTKNFTEDELC
QLVREALHEAIVRTHVTRCPKGLQVTQVDLLAAVKIIQPRFGRQEETLQL
LMPYEYLDRTAFDPNDLLSTGRPRWSCHLVEGKPKSGLTTVAAQMALKTD
CPFIKYISSAELLGLSDSEKCQRIREVLEDAYVSRRSCVIIDDFERVIGY
GALGKRYSKEFLQKLTVLLKKQPPNSHELIIICTSNRLDVLEELGLLSVF
TSVHNVPNVSTPKELMVIVEASKRFEPEELRQIEIAMDGRNVSIGIKRLL
DLIAWVNSLNPDRRAAKLLKKLGEAMGWVGNHSSPLVPQYIASFLDH

BO17655.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31495-PB 341 CG31495-PB 1..341 1..341 1738 100 Plus
CG31495-PA 341 CG31495-PA 1..341 1..341 1738 100 Plus
Nsf2-PC 752 CG33101-PC 398..743 2..327 573 39.9 Plus
Nsf2-PB 752 CG33101-PB 398..743 2..327 573 39.9 Plus
Nsf2-PA 752 CG33101-PA 398..743 2..327 573 39.9 Plus