Clone Sequence Records
BO17663.3prime Sequence
521 bp (521 high quality bases) assembled on 2006-10-13
> BO17663.3prime
ATGGTCTAGAAAGCTTGCTGGAATTCCCATTAGTGACACAATCGCGGAAA
CCCATTTGGAACCCACCTTGACCAGCGCATTTAGGGGCTCACCCTTTTCG
ATATACCTAAAGTTTACCTCCCAGCTGCGCAGATTATCCCGCTCCCCGCA
ATGCCGGCTGCCGCACTGGAACTGCCCGGTTCCGGTGACCACCTCCTGCT
CCGTTCGCCAGCGCAGCGCTATCTTGTTCTCCTTGTAGCGGGACAGGTCC
GCGATGCAGTACTCCTTAAATAGCTTCCTGTAGTATCGCAGGGCCAAGCG
CTGCTCCCAGCTTAGGGTGTCGCTATCCAACTCGTCGTCCTCCCACAGGA
AGCGGTGATTCTCTCGGATTACATCGATGTCTCGCTTGTGCCGACGTGAT
TCCGTCTCATTCGGTAGGTTAAGCACGTAATTACTAAGTATATAGTTGTG
TCGCTCCTTGGCACTCAGGTTGTTCAGATTCACTGGGAATAATTGCGAGC
CGCTCATGTCGACTGATAACT
BO17663.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:00:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16890-PB | 492 | CG16890-RB | 1..489 | 507..19 | 2445 | 100 | Minus |
CG16890-PA | 777 | CG16890-RA | 1..444 | 507..64 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16890-RC | 1179 | CG16890-RC | 24..467 | 507..64 | 2220 | 100 | Minus |
CG16890-RA | 831 | CG16890-RA | 24..467 | 507..64 | 2220 | 100 | Minus |
CG16890-RD | 1184 | CG16890-RD | 53..472 | 483..64 | 2100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13782949..13783437 | 19..507 | 2445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:39:32 has no hits.
BO17663.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:21 Download gff for
BO17663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16890-PB | 1..492 | 18..507 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:14:01 Download gff for
BO17663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16890-RA | 16..467 | 64..519 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:53 Download gff for
BO17663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16890-RA | 16..467 | 64..519 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:53 Download gff for
BO17663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13782949..13783445 | 19..519 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:14:01 Download gff for
BO17663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13782949..13783445 | 19..519 | 99 | | Plus |
BO17663.complete Sequence
523 bp assembled on 2011-06-28
GenBank Submission: KX794340
> BO17663.complete
GAAGTTATCAGTCGACATGAGCGGCTCGCAATTATTCCCAGTGAATCTGA
ACAACCTGAGTGCCAAGGAGCGACACAACTATATACTTAGTAATTACGTG
CTTAACCTACCGAATGAGACGGAATCACGTCGGCACAAGCGAGACATCGA
TGTAATCCGAGAGAATCACCGCTTCCTGTGGGAGGACGACGAGTTGGATA
GCGACACCCTAAGCTGGGAGCAGCGCTTGGCCCTGCGATACTACAGGAAG
CTATTTAAGGAGTACTGCATCGCGGACCTGTCCCGCTACAAGGAGAACAA
GATAGCGCTGCGCTGGCGAACGGAGCAGGAGGTGGTCACCGGAACCGGGC
AGTTCCAGTGCGGCAGCCGGCATTGCGGGGAGCGGGATAATCTGCGCAGC
TGGGAGGTAAACTTTAGGTATATCGAAAAGGGTGAGCCCCTAAATGCGCT
GGTCAAGGTGGGTTCCAAATGGGTTTCCGCGATTGTGTCACTAATGGGAA
TTCCAGCAAGCTTTCTAGACCAT
BO17663.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:16:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16890-RC | 777 | CG16890-PC | 1..444 | 17..460 | 2220 | 100 | Plus |
CG16890-RA | 777 | CG16890-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
CG16890-RD | 747 | CG16890-PD | 1..414 | 47..460 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16890-RC | 1179 | CG16890-RC | 24..467 | 17..460 | 2220 | 100 | Plus |
CG16890-RA | 831 | CG16890-RA | 24..467 | 17..460 | 2220 | 100 | Plus |
CG16890-RD | 1184 | CG16890-RD | 53..472 | 41..460 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13782949..13783437 | 505..17 | 2445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:16:06 has no hits.
BO17663.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:26 Download gff for
BO17663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16890-RB | 21..509 | 17..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:26 Download gff for
BO17663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16890-RA | 24..467 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:07 Download gff for
BO17663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16890-RA | 24..467 | 17..460 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:07 Download gff for
BO17663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13782947..13783437 | 17..507 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:26 Download gff for
BO17663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13782947..13783437 | 17..507 | 99 | | Minus |
BO17663.pep Sequence
Translation from 16 to 523
> BO17663.pep
MSGSQLFPVNLNNLSAKERHNYILSNYVLNLPNETESRRHKRDIDVIREN
HRFLWEDDELDSDTLSWEQRLALRYYRKLFKEYCIADLSRYKENKIALRW
RTEQEVVTGTGQFQCGSRHCGERDNLRSWEVNFRYIEKGEPLNALVKVGS
KWVSAIVSLMGIPASFLDH
BO17663.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16890-PC | 258 | CG16890-PC | 1..148 | 1..148 | 793 | 100 | Plus |
CG16890-PA | 258 | CG16890-PA | 1..148 | 1..148 | 793 | 100 | Plus |
CG16890-PD | 248 | CG16890-PD | 1..138 | 11..148 | 740 | 99.3 | Plus |