Clone BO17663 Report

Search the DGRC for BO17663

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:176
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG16890-RB
Protein status:BO17663.pep: Imported from assembly
Sequenced Size:523

Clone Sequence Records

BO17663.3prime Sequence

521 bp (521 high quality bases) assembled on 2006-10-13

> BO17663.3prime
ATGGTCTAGAAAGCTTGCTGGAATTCCCATTAGTGACACAATCGCGGAAA
CCCATTTGGAACCCACCTTGACCAGCGCATTTAGGGGCTCACCCTTTTCG
ATATACCTAAAGTTTACCTCCCAGCTGCGCAGATTATCCCGCTCCCCGCA
ATGCCGGCTGCCGCACTGGAACTGCCCGGTTCCGGTGACCACCTCCTGCT
CCGTTCGCCAGCGCAGCGCTATCTTGTTCTCCTTGTAGCGGGACAGGTCC
GCGATGCAGTACTCCTTAAATAGCTTCCTGTAGTATCGCAGGGCCAAGCG
CTGCTCCCAGCTTAGGGTGTCGCTATCCAACTCGTCGTCCTCCCACAGGA
AGCGGTGATTCTCTCGGATTACATCGATGTCTCGCTTGTGCCGACGTGAT
TCCGTCTCATTCGGTAGGTTAAGCACGTAATTACTAAGTATATAGTTGTG
TCGCTCCTTGGCACTCAGGTTGTTCAGATTCACTGGGAATAATTGCGAGC
CGCTCATGTCGACTGATAACT

BO17663.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG16890-PB 492 CG16890-RB 1..489 507..19 2445 100 Minus
CG16890-PA 777 CG16890-RA 1..444 507..64 2220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG16890-RC 1179 CG16890-RC 24..467 507..64 2220 100 Minus
CG16890-RA 831 CG16890-RA 24..467 507..64 2220 100 Minus
CG16890-RD 1184 CG16890-RD 53..472 483..64 2100 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13782949..13783437 19..507 2445 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:39:32 has no hits.

BO17663.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:21 Download gff for BO17663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16890-PB 1..492 18..507 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:14:01 Download gff for BO17663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16890-RA 16..467 64..519 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:53 Download gff for BO17663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16890-RA 16..467 64..519 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:53 Download gff for BO17663.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13782949..13783445 19..519 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:14:01 Download gff for BO17663.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13782949..13783445 19..519 99   Plus

BO17663.complete Sequence

523 bp assembled on 2011-06-28

GenBank Submission: KX794340

> BO17663.complete
GAAGTTATCAGTCGACATGAGCGGCTCGCAATTATTCCCAGTGAATCTGA
ACAACCTGAGTGCCAAGGAGCGACACAACTATATACTTAGTAATTACGTG
CTTAACCTACCGAATGAGACGGAATCACGTCGGCACAAGCGAGACATCGA
TGTAATCCGAGAGAATCACCGCTTCCTGTGGGAGGACGACGAGTTGGATA
GCGACACCCTAAGCTGGGAGCAGCGCTTGGCCCTGCGATACTACAGGAAG
CTATTTAAGGAGTACTGCATCGCGGACCTGTCCCGCTACAAGGAGAACAA
GATAGCGCTGCGCTGGCGAACGGAGCAGGAGGTGGTCACCGGAACCGGGC
AGTTCCAGTGCGGCAGCCGGCATTGCGGGGAGCGGGATAATCTGCGCAGC
TGGGAGGTAAACTTTAGGTATATCGAAAAGGGTGAGCCCCTAAATGCGCT
GGTCAAGGTGGGTTCCAAATGGGTTTCCGCGATTGTGTCACTAATGGGAA
TTCCAGCAAGCTTTCTAGACCAT

BO17663.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG16890-RC 777 CG16890-PC 1..444 17..460 2220 100 Plus
CG16890-RA 777 CG16890-PA 1..444 17..460 2220 100 Plus
CG16890-RD 747 CG16890-PD 1..414 47..460 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG16890-RC 1179 CG16890-RC 24..467 17..460 2220 100 Plus
CG16890-RA 831 CG16890-RA 24..467 17..460 2220 100 Plus
CG16890-RD 1184 CG16890-RD 53..472 41..460 2100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13782949..13783437 505..17 2445 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:16:06 has no hits.

BO17663.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:26 Download gff for BO17663.complete
Subject Subject Range Query Range Percent Splice Strand
CG16890-RB 21..509 17..507 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:26 Download gff for BO17663.complete
Subject Subject Range Query Range Percent Splice Strand
CG16890-RA 24..467 17..460 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:07 Download gff for BO17663.complete
Subject Subject Range Query Range Percent Splice Strand
CG16890-RA 24..467 17..460 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:07 Download gff for BO17663.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13782947..13783437 17..507 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:26 Download gff for BO17663.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13782947..13783437 17..507 99   Minus

BO17663.pep Sequence

Translation from 16 to 523

> BO17663.pep
MSGSQLFPVNLNNLSAKERHNYILSNYVLNLPNETESRRHKRDIDVIREN
HRFLWEDDELDSDTLSWEQRLALRYYRKLFKEYCIADLSRYKENKIALRW
RTEQEVVTGTGQFQCGSRHCGERDNLRSWEVNFRYIEKGEPLNALVKVGS
KWVSAIVSLMGIPASFLDH

BO17663.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG16890-PC 258 CG16890-PC 1..148 1..148 793 100 Plus
CG16890-PA 258 CG16890-PA 1..148 1..148 793 100 Plus
CG16890-PD 248 CG16890-PD 1..138 11..148 740 99.3 Plus