Clone Sequence Records
BO17668.3prime Sequence
542 bp (541 high quality bases) assembled on 2006-10-13
> BO17668.3prime
ATGGTCTAGAAAGCTTGCCTTGGGCTGTATCCGCGCCGAGCGTTCCAGCT
CGTTGAATTGCCCATAGTACAACACCTCGCTGATTAGCTTCTCCGCAATG
ATTCGTTGCGTGCGATCCATGGTCCGCAGTTTGAGGGACACATTCGATCC
AATAAAATCGCAATCATCTCGATTCAGGGACTCGGCATAAAAGGCAGACG
CTGCAACGGCCGCCTGGGCGGAAACGCTGCTCTTGATGTGACCCGGACTG
GCGGCCGATTCGGTGGCCTCATCGTTATCCGGATCGGGTTCCTCGCCATC
CGACATGCTCTCCCTGGAGCCCAGCAGCGAATTCATTAGCATATGACCCG
CACTGCCGGCGCCGGTCAGTTTTCGCATATTTAAGGGCATGGCGGGTGTG
CTGGCATCACTGCCTCTGGGTGGCAGGATGAAAGCACCGAAATTGGCCTT
CGCCTGGGCGACTCTCAGGTCCTGGGCCATGTCCACCAATTGGAGCCGAC
TCTCCTCGCCCGCTGAGCTATAGGAACGATGCGATTCGGGTG
BO17668.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-PA | 2106 | CG5953-RA | 1580..2103 | 542..19 | 2620 | 100 | Minus |
| CG5953-PB | 2106 | CG5953-RB | 1580..2103 | 542..19 | 2620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-RD | 4576 | CG5953-RD | 1992..2515 | 542..19 | 2620 | 100 | Minus |
| CG5953-RC | 2535 | CG5953-RC | 993..1516 | 542..19 | 2620 | 100 | Minus |
| CG5953-RB | 3796 | CG5953-RB | 2254..2777 | 542..19 | 2620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16510139..16510662 | 19..542 | 2620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:00:19 has no hits.
BO17668.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:25 Download gff for
BO17668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-PB | 1580..2106 | 16..542 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:46:46 Download gff for
BO17668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RB | 2254..2777 | 19..542 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:54 Download gff for
BO17668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RB | 2254..2777 | 19..542 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:54 Download gff for
BO17668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16510139..16510662 | 19..542 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:46:46 Download gff for
BO17668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16510139..16510662 | 19..542 | 100 | | Plus |
BO17668.5prime Sequence
806 bp (678 high quality bases) assembled on 2006-10-13
> BO17668.5prime
GAAGTTATCAGTCGACATGAACTTCAATCCGGCCAGCGTGGTAGCCGCCG
CAGCAGCAGCCGCACATCAGACGACCCATCTTCACCACCATCACCATCAT
CATCCGTATTTAAGCCATCACCAGAGCAGCATCACCCAACCACAAGGACA
GCAACAACAGCTGATCCCACTGCCTGTCGGCGGAGGAGGCGGAAGTTTAC
CAGTGGGTGGCAGTGGCGGTGGCGATACATCGCCCAAGATCATGGAGTGG
ACCAACGACGATGCTCTGGAGCTGATTGAGCAGTATCGCTGCCATACAGA
GCTATGGAATCGTGCCGATCCCAAGTACAAGGATAAACTATGTCGATTCC
GGGCATGGTCGGAAATAGCCGAGCGTTTCGGTTGTAGCAAGGCGGAAGTG
GAGCGGAAGATGAACGTACTGCTCACACAGTATCGCCGGGAGAAGCACAA
GATGTTCGTGAAGATATACCAGGGCATACAGCCCAATCCGTCCAAATGGT
ATGCCTTCAAGCGATTCGATTTCATGGAGGCGGGCGGCGGCAGCCTGAGC
GGCGGTGGGTCCGTGGGATCCGGTGTTAATGCCGCCAGCGGAAACCTGGT
GCCGAATCCCGTTTCCTCATCCGCTGCCGCTGCCGCCCACAACGGGCTAA
ACGGACTGGCTGCCGCGGCAGCGGCCTACGAAAGCGGTACGATTGCGGCG
GCGGGCAACGGAGGAGCACCACCCACTGTACCAGGTGGCGGAGCACCTGG
CTCACAGACCGTCATGCAGCACAGACGCATCAAGACAAAAGAGCTGAAAA
TATTCG
BO17668.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:00:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-PA | 2106 | CG5953-RA | 1..783 | 17..799 | 3890 | 99.8 | Plus |
| CG5953-PB | 2106 | CG5953-RB | 1..783 | 17..799 | 3890 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:44:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-RD | 4576 | CG5953-RD | 413..1195 | 17..799 | 3900 | 99.9 | Plus |
| CG5953-RB | 3796 | CG5953-RB | 675..1457 | 17..799 | 3900 | 99.9 | Plus |
| CG5953-RA | 3534 | CG5953-RA | 413..1195 | 17..799 | 3900 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16527402..16528184 | 799..17 | 3900 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-11 03:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7161..7209 | 113..161 | 109 | 74 | Plus |
BO17668.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:26 Download gff for
BO17668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-PB | 1..790 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:02:45 Download gff for
BO17668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RA | 413..1202 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:57:59 Download gff for
BO17668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RA | 413..1202 | 17..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:57:59 Download gff for
BO17668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16527395..16528184 | 17..806 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:02:45 Download gff for
BO17668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16527395..16528184 | 17..806 | 99 | | Minus |
BO17668.complete Sequence
2137 bp assembled on 2010-09-14
GenBank Submission: KX795342
> BO17668.complete
GAAGTTATCAGTCGACATGAACTTCAATCCGGCCAGCGTGGTAGCCGCCG
CAGCAGCAGCCGCACATCAGACGACCCATCTTCACCACCATCACCATCAT
CATCCGTATTTAAGCCATCACCAGAGCAGCATCACCCAACCACAAGGACA
GCAACAACAGCTGATCCCACTGCCTGTCGGCGGAGGAGGCGGAAGTTTAC
CAGTGGGTGGCAGTGGCGGTGGCGATACATCGCCCAAGATCATGGAGTGG
ACCAACGACGATGCTCTGGAGCTGATTGAGCAGTATCGCTGCCATACAGA
GCTATGGAATCGTGCCGATCCCAAGTACAAGGATAAACTATGTCGATTCC
GGGCATGGTCGGAAATAGCCGAGCGTTTCGGTTGTAGCAAGGCGGAAGTG
GAGCGGAAGATGAACGTACTGCTCACACAGTATCGCCGGGAGAAGCACAA
GATGTTCGTGAAGATATACCAGGGCATACAGCCCAATCCGTCCAAATGGT
ATGCCTTCAAGCGATTCGATTTCATGGAGGCGGGCGGCGGCAGCCTGAGC
GGCGGTGGGTCCGTGGGATCCGGTGTTAATGCCGCCAGCGGAAACCTGGT
GCCGAATCCCGTTTCCTCATCCGCTGCCGCTGCCGCCCACAACGGGCTAA
ACGGACTGGCTGCCGCGGCAGCGGCCTACGAAAGCGGTACGATTGCGGCG
GCGGGCAACGGAGGAGCACCACCCACTGTACCAGGTGGCGGAGCACCTGG
CTCACAGACCGTCATGCAGCACAGACGCATCAAGACCAAAGAGCTGAAAT
ATTTCGGAGCGATGGGCCTGAACATACCCATGTTGATAGCGAGCAGCCAG
ACGCTGGACAGTTGGAATACGGCGGGTCAGTACTCGCCACCGATATCGGG
ATCCGGCGGCGGTGGATCCGAGCGAGGAGGAAGTGCTGGAGGCGGCGGAG
TGCCGCCACAGCAACTGCGAGTACCGCTGCCGATGAGCTATCATGGCGGA
GCTGGTGGTGGAAGCAGCAGTAGTGATTTCCAGCAGAGTCCCCTGAAGAC
CATGGACACCTCGGACAATGAGGATAATAACAATACCAAGGAGGATGTGG
CGGCGGCAGCGGCACTGGGACAACTGGCTGCCAAGGTCGAGCTGCGATCG
CCGGCGGGCGCAGGTCCTGGCGGTGGCGGTGGTTCGAGCAGTAGGGAAGC
CAATGATCCAACCAGCGATCCCATCAAGCCCGACCGCACTCTAAGCGAAG
CTGGCAGCAGTCCCATACCGAATACCAATATGCACGAGGCGCACAAGAAT
CACCTGCTAAACAGTCCCGCCGGCGGAAGGTCAGTCACGCCGCGGCAGGC
GCATGAGCAGCTGCATCACCATCCGCACACGCAACACCACCTGCAACAGC
AGCAGCAACAACTGCAGCAGCAGCATCAGCAGTTGCAGCAGCAACAACTG
CAACAGCATCAGCAACAGCAGCAGCTGCATCACGGCCACGAGGAATTGGA
CATCAAGCAGGAGTTGGTGGACTATTTCCATGGTCAGGCGGCTGGCGGTG
GTGGTGGTGGTGGTGGTGGTGTTGTTGGTCCTGCACCACCGCCACCACCC
GAATCGCATCGTTCCTATAGCTCAGCGGGCGAGGAGAGTCGGCTCCAATT
GGTGGACATGGCCCAGGACCTGAGAGTCGCCCAGGCGAAGGCCAATTTCG
GTGCTTTCATCCTGCCACCCAGAGGCAGTGATGCCAGCACACCCGCCATG
CCCTTAAATATGCGAAAACTGACCGGCGCCGGCAGTGCGGGTCATATGCT
AATGAATTCGCTGCTGGGCTCCAGGGAGAGCATGTCGGATGGCGAGGAAC
CCGATCCGGATAACGATGAGGCCACCGAATCGGCCGCCAGTCCGGGTCAC
ATCAAGAGCAGCGTTTCCGCCCAGGCGGCCGTTGCAGCGTCTGCCTTTTA
TGCCGAGTCCCTGAATCGAGATGATTGCGATTTTATTGGATCGAATGTGT
CCCTCAAACTGCGGACCATGGATCGCACGCAACGAATCATTGCGGAGAAG
CTAATCAGCGAGGTGTTGTACTATGGGCAATTCAACGAGCTGGAACGCTC
GGCGCGGATACAGCCCAAGGCAAGCTTTCTAGACCAT
BO17668.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:29:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-RD | 2106 | CG5953-PD | 1..2103 | 17..2119 | 10515 | 100 | Plus |
| CG5953-RB | 2106 | CG5953-PB | 1..2103 | 17..2119 | 10515 | 100 | Plus |
| CG5953-RA | 2106 | CG5953-PA | 1..2103 | 17..2119 | 10515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-RD | 4576 | CG5953-RD | 413..2515 | 17..2119 | 10515 | 100 | Plus |
| CG5953-RB | 3796 | CG5953-RB | 675..2777 | 17..2119 | 10515 | 100 | Plus |
| CG5953-RA | 3534 | CG5953-RA | 413..2515 | 17..2119 | 10515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16510139..16511447 | 2119..811 | 6545 | 100 | Minus |
| 2L | 23513712 | 2L | 16527390..16528184 | 811..17 | 3975 | 100 | Minus |
| 2R | 25286936 | 2R | 13823840..13823954 | 1477..1364 | 210 | 80.9 | Minus |
| X | 23542271 | X | 21333282..21333375 | 1473..1380 | 185 | 79.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:29:35 has no hits.
BO17668.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:44:02 Download gff for
BO17668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RB | 675..2777 | 17..2121 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:39 Download gff for
BO17668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RA | 413..2515 | 17..2121 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:12:21 Download gff for
BO17668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RA | 413..2515 | 17..2121 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:12:21 Download gff for
BO17668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16510135..16511446 | 812..2121 | 99 | <- | Minus |
| 2L | 16527390..16528184 | 17..811 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:39 Download gff for
BO17668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16527390..16528184 | 17..811 | 100 | | Minus |
| arm_2L | 16510135..16511446 | 812..2121 | 99 | <- | Minus |
BO17668.pep Sequence
Translation from 16 to 2137
> BO17668.pep
MNFNPASVVAAAAAAAHQTTHLHHHHHHHPYLSHHQSSITQPQGQQQQLI
PLPVGGGGGSLPVGGSGGGDTSPKIMEWTNDDALELIEQYRCHTELWNRA
DPKYKDKLCRFRAWSEIAERFGCSKAEVERKMNVLLTQYRREKHKMFVKI
YQGIQPNPSKWYAFKRFDFMEAGGGSLSGGGSVGSGVNAASGNLVPNPVS
SSAAAAAHNGLNGLAAAAAAYESGTIAAAGNGGAPPTVPGGGAPGSQTVM
QHRRIKTKELKYFGAMGLNIPMLIASSQTLDSWNTAGQYSPPISGSGGGG
SERGGSAGGGGVPPQQLRVPLPMSYHGGAGGGSSSSDFQQSPLKTMDTSD
NEDNNNTKEDVAAAAALGQLAAKVELRSPAGAGPGGGGGSSSREANDPTS
DPIKPDRTLSEAGSSPIPNTNMHEAHKNHLLNSPAGGRSVTPRQAHEQLH
HHPHTQHHLQQQQQQLQQQHQQLQQQQLQQHQQQQQLHHGHEELDIKQEL
VDYFHGQAAGGGGGGGGGVVGPAPPPPPESHRSYSSAGEESRLQLVDMAQ
DLRVAQAKANFGAFILPPRGSDASTPAMPLNMRKLTGAGSAGHMLMNSLL
GSRESMSDGEEPDPDNDEATESAASPGHIKSSVSAQAAVAASAFYAESLN
RDDCDFIGSNVSLKLRTMDRTQRIIAEKLISEVLYYGQFNELERSARIQP
KASFLDH
BO17668.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:31:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-PD | 701 | CG5953-PD | 1..701 | 1..701 | 3695 | 100 | Plus |
| CG5953-PB | 701 | CG5953-PB | 1..701 | 1..701 | 3695 | 100 | Plus |
| CG5953-PA | 701 | CG5953-PA | 1..701 | 1..701 | 3695 | 100 | Plus |
| CG5953-PC | 473 | CG5953-PC | 38..473 | 266..701 | 2274 | 100 | Plus |
| Sp1-PB | 520 | CG1343-PB | 280..486 | 265..508 | 205 | 31.2 | Plus |
