BO17672.complete Sequence
2833 bp assembled on 2010-07-15
GenBank Submission: KX794371
> BO17672.complete
GAAGTTATCAGTCGACATGACCAGGACGTGCAGAGTGTGTGGCTGCGACG
ACGGACGCTACTGGATTGAAACGCCCGTGGAGAAGTACGCGGAGAAGACC
TTCGTCCAGCTGCTGGTCGAGCTAACGCGAATCGAGGTGGTCATGGCGCA
AGCTGAGAAGTTCCCACAGTGGCTGTGCTACGCGTGTGCCGAGAAGCTGG
AGAGCACCTACGATTTTGTGCTGCAGGCACGTCGAACACACGAGCTGTGG
CTGCAGAAAATCGGGGATTCTTTGAATGGGGATGACGAGATGGAGGGCAC
TGCGGCCTTGGAATGCCTGCGTGAGACACCCATCCACCTGTTTGAGATTG
AAGGCGTGACCATCAAGACGGAGGAACTGGCTTCAACGCAACAGGCGCCC
AAGGCAGATCCTTTAGTGCGCCCGCGCATTGTCAAACGGAGTATTGTACA
CTTTAGCGATTCCGATGAAGACCTGGATGATGTGCCTCTGCGTCAACGTA
AGATAGCAGCCTCGGTCTGCGGCTCTGACACGACGAAGGAAAATGTTTGC
GAGCTGTGCAACAAGGTCTTCAGATATGTCACCAATCTGTATCGTCACAA
GCAGAGGGACCACGGAATTCTGGGCAAGAACGGAGAGGATTATGAAGAAG
ACTATTACAAGTGCGATCTGTGCGATAAAACCTACAAGTACGTGATGGCG
CTGGTGAAGCACAAACACAAAGAGCACGGATCCAGTCTCCTGTCGAATAA
TTCCGGGCGAAAGATGCCGTCAACTTTGGCCGAAGATGCCAATCCATACA
GTCCAGCATCCATCTCTGAAACATCCACTAATCAAAGCAGAACCAACAAC
GACTCCCTGGTACACAGCATCATCAAGGCAGTGGTACTCTCCGATGAGGA
TGGCCACAGTGGTGAAGATAGCTACTACAATTGCGATCAGTGTAGTAAAT
CGTACAAGTACATTGTCAGCTTGATCAAGCACAAGCACAAAGAGCACCTA
GACAAGGAGTCATACAAGCAGTCGGATGACGAAGACGATCGGCCTCTGGC
CTCCACATCCGCCTCGGCAAGTGCACCAACTGCGAAACCTTCTAGGATCA
ACCGAAGAGTCGACGGGTTCGACTTTCATCGCAGCGAGCCAAACGGAGCC
AAGGAAATCAAGTGCATGATATGCTTGCGACGGTTTACTAAACTACGGGA
GCTTAGGAATCATCTACAGAACCATCCCACTGATTTCGATTTTGAGGCGC
ATGGCGAGCCTATCGAGCGCATTGCGGAAGGATTTTTCAAAACAGCCGTT
GAGTCCACGGCAGAGGGCTTAAAGCGGCGAATATTTAGAGATCTCAGAAT
GGGCGTCTATGGACGCTACTATTCCATCACAAATCAAGCGCGTTATGAAA
TGACCCTAGATAGCTCGGATACGGACAGTGATGGCGATGGCGACGACAAT
GTCGTCATCCGACGAAGTTACTCCTGTGAATTGTGCGACTCTCCGGAGGC
TAGGTGGCCGCGCAAGTACCTGCTACACCAGCACCATCAGAAGGAGCACA
CATGGCTAGACGCCCCTCATGTCTGCCAGCGCTGCGACTCGCGGTTTCTC
AATCTCCAGCTTCTGAAGCACCATACCAGCCAGCTGTGTCAAAACACTTT
GAAGCGCTTTATGTGCGACAAGTGCCCTCAGCGATTCTTTTGGCGTCGCA
ATTTGCGCGCACACCTTGTCGAGCACAAGTGCAAGCAAGAATCTTATCCA
TGTGACCAATGCTCTCGTAGCTTTCAAGACAAGAGCGCCGTGACCAAACA
TAAGCTCATGATGCATCGGGATAGTAACATGGAGCTCCTTCCCTGCCGCT
GGTGCACCCGTACGTTCTACCGTCCTGCCCTGCTGTACAAGCATTTACAG
AGACACGGATTCACTGGTCAGGACCTACCTCTGGCTGAAACCTTGCTAGC
GGATGCGTCAAAGCCGGCGGGTCCCAAGAGCGTCCAGTGCAAGATTTGTG
ACATCCAGTTTGTCAGCGTGGCAGACTTGCGAAGGCACATATCTATGCAG
GGCCACAGCGATCAACCCTCGGCGTACATGATTAGCACAGCAACTGGCTT
TGAGCTCCTGCTGGACGACACAGACGACAGTGATGAGGAAACATCGGGCA
GGACGTACTCTTGCGACCTTTGTGATCTGAATTTCCGACGCCGACGAGAG
ATCAGCGAGCATCAGTACTCCCTCCACAGCTTTGACAAACTGCCACATAA
CTGCGAGCACTGCATTTTCAAGACGGTTGATAAGAACATGCTGCATCAGC
ATCTTCGCACGCAGTGTATGAACACCGAAAAGAAGTTTGCCTGCATGCGC
TGCGGCTACAAGTTCATGTGGGAGGAGAACTTGGCCCAGCACCTTTCCAC
CCAGCATTCCAAGCAACCCGCCGTTCCGGAACAGCAGCCACCGCTGAGGA
GAAAGAGGCGCTTCCGCTACCAGTGCCCCCATTGCTGGCGTTCCTTTGTC
GTTCAGCCCAGCCTGGATAAACACATTCGGGACATGCATGTGGCCAAGAA
AAATCCAGGAAAAAAGTATCTCTGCTCGCTGTGCGGCCTGGAGTCACTGA
CCCCCAACAAGCTTAACATCCATATGCGGCGACACACGGGCGAGAAGCCA
TTCAAGTGCGATCTCTGCGACATGCGCTTCACGGTCCACTACGAGTTGAA
GGTGCACCGTCGGAAGCATACTGGCGAGCGACCCTACCAATGCACGTTTT
GCGACAAGGACTTCGCTCGACCAGACAAACTAAGACGGCACGTCTTCATG
CACAACGACAAGTCGGCAAGCTTTCTAGACCAT
BO17672.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10669-RB | 2802 | CG10669-PB | 1..2799 | 17..2815 | 13995 | 100 | Plus |
| CG10669-RA | 2802 | CG10669-PA | 1..2799 | 17..2815 | 13995 | 100 | Plus |
| CG18476-RA | 2811 | CG18476-PA | 2415..2469 | 2620..2674 | 185 | 89.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10669-RB | 3310 | CG10669-RB | 97..2895 | 17..2815 | 13995 | 100 | Plus |
| CG10669-RA | 3008 | CG10669-RA | 97..2895 | 17..2815 | 13995 | 100 | Plus |
| CG18476-RA | 2946 | CG18476-RA | 2515..2569 | 2620..2674 | 185 | 89.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25333124..25333973 | 1735..886 | 4250 | 100 | Minus |
| 3R | 32079331 | 3R | 25332374..25332924 | 2284..1734 | 2755 | 100 | Minus |
| 3R | 32079331 | 3R | 25331778..25332310 | 2815..2283 | 2665 | 100 | Minus |
| 3R | 32079331 | 3R | 25334441..25334952 | 646..135 | 2545 | 99.8 | Minus |
| 3R | 32079331 | 3R | 25334147..25334392 | 885..640 | 1230 | 100 | Minus |
| 3R | 32079331 | 3R | 25335024..25335147 | 140..17 | 620 | 100 | Minus |
| 3R | 32079331 | 3R | 11675297..11675351 | 2674..2620 | 185 | 89.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:32:22 has no hits.
BO17672.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:42:33 Download gff for
BO17672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10669-RA | 138..2936 | 17..2817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:24 Download gff for
BO17672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10669-RA | 97..2895 | 17..2817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:11 Download gff for
BO17672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10669-RA | 97..2895 | 17..2817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:11 Download gff for
BO17672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25331776..25332308 | 2285..2817 | 99 | <- | Minus |
| 3R | 25332374..25332922 | 1736..2284 | 100 | <- | Minus |
| 3R | 25333124..25333973 | 886..1735 | 100 | <- | Minus |
| 3R | 25334147..25334392 | 640..885 | 100 | <- | Minus |
| 3R | 25334448..25334950 | 137..639 | 100 | <- | Minus |
| 3R | 25335028..25335147 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:24 Download gff for
BO17672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21157498..21158030 | 2285..2817 | 99 | <- | Minus |
| arm_3R | 21158096..21158644 | 1736..2284 | 100 | <- | Minus |
| arm_3R | 21158846..21159695 | 886..1735 | 100 | <- | Minus |
| arm_3R | 21159869..21160114 | 640..885 | 100 | <- | Minus |
| arm_3R | 21160170..21160672 | 137..639 | 100 | <- | Minus |
| arm_3R | 21160750..21160869 | 17..136 | 100 | | Minus |
BO17672.pep Sequence
Translation from 16 to 2833
> BO17672.pep
MTRTCRVCGCDDGRYWIETPVEKYAEKTFVQLLVELTRIEVVMAQAEKFP
QWLCYACAEKLESTYDFVLQARRTHELWLQKIGDSLNGDDEMEGTAALEC
LRETPIHLFEIEGVTIKTEELASTQQAPKADPLVRPRIVKRSIVHFSDSD
EDLDDVPLRQRKIAASVCGSDTTKENVCELCNKVFRYVTNLYRHKQRDHG
ILGKNGEDYEEDYYKCDLCDKTYKYVMALVKHKHKEHGSSLLSNNSGRKM
PSTLAEDANPYSPASISETSTNQSRTNNDSLVHSIIKAVVLSDEDGHSGE
DSYYNCDQCSKSYKYIVSLIKHKHKEHLDKESYKQSDDEDDRPLASTSAS
ASAPTAKPSRINRRVDGFDFHRSEPNGAKEIKCMICLRRFTKLRELRNHL
QNHPTDFDFEAHGEPIERIAEGFFKTAVESTAEGLKRRIFRDLRMGVYGR
YYSITNQARYEMTLDSSDTDSDGDGDDNVVIRRSYSCELCDSPEARWPRK
YLLHQHHQKEHTWLDAPHVCQRCDSRFLNLQLLKHHTSQLCQNTLKRFMC
DKCPQRFFWRRNLRAHLVEHKCKQESYPCDQCSRSFQDKSAVTKHKLMMH
RDSNMELLPCRWCTRTFYRPALLYKHLQRHGFTGQDLPLAETLLADASKP
AGPKSVQCKICDIQFVSVADLRRHISMQGHSDQPSAYMISTATGFELLLD
DTDDSDEETSGRTYSCDLCDLNFRRRREISEHQYSLHSFDKLPHNCEHCI
FKTVDKNMLHQHLRTQCMNTEKKFACMRCGYKFMWEENLAQHLSTQHSKQ
PAVPEQQPPLRRKRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKK
YLCSLCGLESLTPNKLNIHMRRHTGEKPFKCDLCDMRFTVHYELKVHRRK
HTGERPYQCTFCDKDFARPDKLRRHVFMHNDKSASFLDH
BO17672.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10669-PB | 933 | CG10669-PB | 1..933 | 1..933 | 5094 | 100 | Plus |
| CG10669-PA | 933 | CG10669-PA | 1..933 | 1..933 | 5094 | 100 | Plus |
| CG18476-PA | 936 | CG18476-PA | 198..867 | 298..930 | 1447 | 41.4 | Plus |
| CG11902-PB | 1426 | CG11902-PB | 569..1348 | 207..930 | 1072 | 32.8 | Plus |
| CG11902-PB | 1426 | CG11902-PB | 7..1060 | 5..897 | 560 | 23 | Plus |
| CG5245-PA | 501 | CG5245-PA | 108..476 | 483..939 | 361 | 23.1 | Plus |
| CG18476-PA | 936 | CG18476-PA | 7..932 | 5..937 | 349 | 22 | Plus |
| CG11902-PB | 1426 | CG11902-PB | 230..799 | 300..921 | 321 | 23.3 | Plus |
| CG11902-PB | 1426 | CG11902-PB | 866..1418 | 178..812 | 313 | 22.3 | Plus |
