Clone BO17678 Report

Search the DGRC for BO17678

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:176
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG10470-RA
Protein status:BO17678.pep: validated full length
Sequenced Size:583

Clone Sequence Records

BO17678.3prime Sequence

581 bp (581 high quality bases) assembled on 2006-10-13

> BO17678.3prime
ATGGTCTAGAAAGCTTGCTTTGAACTGGCCTGGAGCAGGACCAAACAGAC
CTACACCCTGCTTGCTTGCGGCGCGCGATGGGGCAAAACCCAGAAGCTTT
TGGATGTTCTGACGAATGGACATGGTGCACAGGATGTAGAGGAATATAAA
GGAGCAGTCCGTATAGTCGTCACCGGACAAATTTCGGTGACTTAACCCCT
GGATCCAGGAGATTGGTGTGAAGGGCAGCTGGGCAACCACACGGCCGTCG
AAGATGCTGTTGAACATACTCAACAGGGCGGTGAAGGCGAATCCCGTGGC
GAACATGGTCTTCATCTTGACAAGCGAGAGATCGCGGTTGTTGTTTTTCA
GTTTTTCCTCGTCGCGCTCGATCTTCTTCTTTACCGCTTTGTCCAGGGAG
TCCCCATGGATTTCCTTGCGGCGCTCCAGCTTTTTGCTCTGCTTTTCCAC
CTCGGTCTTTAGCTTTTGGTACTTCTCCGTCCGGTAAACCATCACCCATG
TAAGACCTTCGCCCAGGAAGGCGGTGCAAACCGATATAAAAACAATTAAT
ATTGTGTCGGACCACATGTCGACTGATAACT

BO17678.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10470-PA 552 CG10470-RA 1..549 567..19 2745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10470-RA 701 CG10470-RA 100..648 567..19 2745 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19049422..19049831 428..19 2050 100 Minus
2L 23513712 2L 19049285..19049364 508..429 400 100 Minus
2L 23513712 2L 19049175..19049237 567..505 315 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:58:00 has no hits.

BO17678.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:30 Download gff for BO17678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10470-PA 1..552 18..567 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:49 Download gff for BO17678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 100..653 11..567 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:18 Download gff for BO17678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 100..653 11..567 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:18 Download gff for BO17678.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19049175..19049235 507..567 100 -> Minus
2L 19049287..19049364 429..506 100 -> Minus
2L 19049422..19049836 11..428 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:49 Download gff for BO17678.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19049175..19049235 507..567 100 -> Minus
arm_2L 19049287..19049364 429..506 100 -> Minus
arm_2L 19049422..19049836 11..428 99   Minus

BO17678.5prime Sequence

581 bp (581 high quality bases) assembled on 2006-10-13

> BO17678.5prime
GAAGTTATCAGTCGACATGTGGTCCGACACAATATTAATTGTTTTTATAT
CGGTTTGCACCGCCTTCCTGGGCGAAGGTCTTACATGGGTGATGGTTTAC
CGGACGGAGAAGTACCAAAAGCTAAAGACCGAGGTGGAAAAGCAGAGCAA
AAAGCTGGAGCGCCGCAAGGAAATCCATGGGGACTCCCTGGACAAAGCGG
TAAAGAAGAAGATCGAGCGCGACGAGGAAAAACTGAAAAACAACAACCGC
GATCTCTCGCTTGTCAAGATGAAGACCATGTTCGCCACGGGATTCGCCTT
CACCGCCCTGTTGAGTATGTTCAACAGCATCTTCGACGGCCGTGTGGTTG
CCCAGCTGCCCTTCACACCAATCTCCTGGATCCAGGGGTTAAGTCACCGA
AATTTGTCCGGTGACGACTATACGGACTGCTCCTTTATATTCCTCTACAT
CCTGTGCACCATGTCCATTCGTCAGAACATCCAAAAGCTTCTGGGTTTTG
CCCCATCGCGCGCCGCAAGCAAGCAGGGTGTAGGTCTGTTTGGTCCTGCT
CCAGGCCAGTTCAAAGCAAGCTTTCTAGACC

BO17678.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10470-PA 552 CG10470-RA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10470-RA 701 CG10470-RA 100..648 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19049422..19049831 156..565 2050 100 Plus
2L 23513712 2L 19049285..19049364 76..155 400 100 Plus
2L 23513712 2L 19049175..19049237 17..79 315 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:57:27 has no hits.

BO17678.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:31 Download gff for BO17678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10470-PA 1..552 17..566 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:57 Download gff for BO17678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 100..653 17..573 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:59 Download gff for BO17678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 100..653 17..573 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:59 Download gff for BO17678.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19049175..19049235 17..77 100 -> Plus
2L 19049287..19049364 78..155 100 -> Plus
2L 19049422..19049836 156..573 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:57 Download gff for BO17678.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19049175..19049235 17..77 100 -> Plus
arm_2L 19049287..19049364 78..155 100 -> Plus
arm_2L 19049422..19049836 156..573 99   Plus

BO17678.complete Sequence

583 bp assembled on 2006-10-11

GenBank Submission: FJ634190

> BO17678.complete
GAAGTTATCAGTCGACATGTGGTCCGACACAATATTAATTGTTTTTATAT
CGGTTTGCACCGCCTTCCTGGGCGAAGGTCTTACATGGGTGATGGTTTAC
CGGACGGAGAAGTACCAAAAGCTAAAGACCGAGGTGGAAAAGCAGAGCAA
AAAGCTGGAGCGCCGCAAGGAAATCCATGGGGACTCCCTGGACAAAGCGG
TAAAGAAGAAGATCGAGCGCGACGAGGAAAAACTGAAAAACAACAACCGC
GATCTCTCGCTTGTCAAGATGAAGACCATGTTCGCCACGGGATTCGCCTT
CACCGCCCTGTTGAGTATGTTCAACAGCATCTTCGACGGCCGTGTGGTTG
CCCAGCTGCCCTTCACACCAATCTCCTGGATCCAGGGGTTAAGTCACCGA
AATTTGTCCGGTGACGACTATACGGACTGCTCCTTTATATTCCTCTACAT
CCTGTGCACCATGTCCATTCGTCAGAACATCCAAAAGCTTCTGGGTTTTG
CCCCATCGCGCGCCGCAAGCAAGCAGGGTGTAGGTCTGTTTGGTCCTGCT
CCAGGCCAGTTCAAAGCAAGCTTTCTAGACCAT

BO17678.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10470-RA 552 CG10470-PA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10470-RA 701 CG10470-RA 100..648 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19049422..19049831 156..565 2050 100 Plus
2L 23513712 2L 19049285..19049364 76..155 400 100 Plus
2L 23513712 2L 19049175..19049237 17..79 315 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:08:29 has no hits.

BO17678.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:19 Download gff for BO17678.complete
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 1..552 17..566 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:35 Download gff for BO17678.complete
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 97..650 17..573 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:44 Download gff for BO17678.complete
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 100..648 17..567 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:19 Download gff for BO17678.complete
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 97..650 17..573 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:18 Download gff for BO17678.complete
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 100..648 17..567 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:18 Download gff for BO17678.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19049287..19049364 78..155 100 -> Plus
2L 19049175..19049235 17..77 100 -> Plus
2L 19049422..19049831 156..567 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:44 Download gff for BO17678.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19049175..19049235 17..77 100 -> Plus
arm_2L 19049287..19049364 78..155 100 -> Plus
arm_2L 19049422..19049831 156..567 99   Plus

BO17678.pep Sequence

Translation from 16 to 583

> BO17678.pep
MWSDTILIVFISVCTAFLGEGLTWVMVYRTEKYQKLKTEVEKQSKKLERR
KEIHGDSLDKAVKKKIERDEEKLKNNNRDLSLVKMKTMFATGFAFTALLS
MFNSIFDGRVVAQLPFTPISWIQGLSHRNLSGDDYTDCSFIFLYILCTMS
IRQNIQKLLGFAPSRAASKQGVGLFGPAPGQFKASFLDH

BO17678.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10470-PA 183 CG10470-PA 1..183 1..183 944 100 Plus