Clone Sequence Records
BO17678.3prime Sequence
581 bp (581 high quality bases) assembled on 2006-10-13
> BO17678.3prime
ATGGTCTAGAAAGCTTGCTTTGAACTGGCCTGGAGCAGGACCAAACAGAC
CTACACCCTGCTTGCTTGCGGCGCGCGATGGGGCAAAACCCAGAAGCTTT
TGGATGTTCTGACGAATGGACATGGTGCACAGGATGTAGAGGAATATAAA
GGAGCAGTCCGTATAGTCGTCACCGGACAAATTTCGGTGACTTAACCCCT
GGATCCAGGAGATTGGTGTGAAGGGCAGCTGGGCAACCACACGGCCGTCG
AAGATGCTGTTGAACATACTCAACAGGGCGGTGAAGGCGAATCCCGTGGC
GAACATGGTCTTCATCTTGACAAGCGAGAGATCGCGGTTGTTGTTTTTCA
GTTTTTCCTCGTCGCGCTCGATCTTCTTCTTTACCGCTTTGTCCAGGGAG
TCCCCATGGATTTCCTTGCGGCGCTCCAGCTTTTTGCTCTGCTTTTCCAC
CTCGGTCTTTAGCTTTTGGTACTTCTCCGTCCGGTAAACCATCACCCATG
TAAGACCTTCGCCCAGGAAGGCGGTGCAAACCGATATAAAAACAATTAAT
ATTGTGTCGGACCACATGTCGACTGATAACT
BO17678.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10470-PA | 552 | CG10470-RA | 1..549 | 567..19 | 2745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10470-RA | 701 | CG10470-RA | 100..648 | 567..19 | 2745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19049422..19049831 | 428..19 | 2050 | 100 | Minus |
2L | 23513712 | 2L | 19049285..19049364 | 508..429 | 400 | 100 | Minus |
2L | 23513712 | 2L | 19049175..19049237 | 567..505 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:58:00 has no hits.
BO17678.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:30 Download gff for
BO17678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-PA | 1..552 | 18..567 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:49 Download gff for
BO17678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-RA | 100..653 | 11..567 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:18 Download gff for
BO17678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-RA | 100..653 | 11..567 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:18 Download gff for
BO17678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19049175..19049235 | 507..567 | 100 | -> | Minus |
2L | 19049287..19049364 | 429..506 | 100 | -> | Minus |
2L | 19049422..19049836 | 11..428 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:49 Download gff for
BO17678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19049175..19049235 | 507..567 | 100 | -> | Minus |
arm_2L | 19049287..19049364 | 429..506 | 100 | -> | Minus |
arm_2L | 19049422..19049836 | 11..428 | 99 | | Minus |
BO17678.5prime Sequence
581 bp (581 high quality bases) assembled on 2006-10-13
> BO17678.5prime
GAAGTTATCAGTCGACATGTGGTCCGACACAATATTAATTGTTTTTATAT
CGGTTTGCACCGCCTTCCTGGGCGAAGGTCTTACATGGGTGATGGTTTAC
CGGACGGAGAAGTACCAAAAGCTAAAGACCGAGGTGGAAAAGCAGAGCAA
AAAGCTGGAGCGCCGCAAGGAAATCCATGGGGACTCCCTGGACAAAGCGG
TAAAGAAGAAGATCGAGCGCGACGAGGAAAAACTGAAAAACAACAACCGC
GATCTCTCGCTTGTCAAGATGAAGACCATGTTCGCCACGGGATTCGCCTT
CACCGCCCTGTTGAGTATGTTCAACAGCATCTTCGACGGCCGTGTGGTTG
CCCAGCTGCCCTTCACACCAATCTCCTGGATCCAGGGGTTAAGTCACCGA
AATTTGTCCGGTGACGACTATACGGACTGCTCCTTTATATTCCTCTACAT
CCTGTGCACCATGTCCATTCGTCAGAACATCCAAAAGCTTCTGGGTTTTG
CCCCATCGCGCGCCGCAAGCAAGCAGGGTGTAGGTCTGTTTGGTCCTGCT
CCAGGCCAGTTCAAAGCAAGCTTTCTAGACC
BO17678.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10470-PA | 552 | CG10470-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10470-RA | 701 | CG10470-RA | 100..648 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19049422..19049831 | 156..565 | 2050 | 100 | Plus |
2L | 23513712 | 2L | 19049285..19049364 | 76..155 | 400 | 100 | Plus |
2L | 23513712 | 2L | 19049175..19049237 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:57:27 has no hits.
BO17678.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:31 Download gff for
BO17678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-PA | 1..552 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:57 Download gff for
BO17678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-RA | 100..653 | 17..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:59 Download gff for
BO17678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-RA | 100..653 | 17..573 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:59 Download gff for
BO17678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19049175..19049235 | 17..77 | 100 | -> | Plus |
2L | 19049287..19049364 | 78..155 | 100 | -> | Plus |
2L | 19049422..19049836 | 156..573 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:57 Download gff for
BO17678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19049175..19049235 | 17..77 | 100 | -> | Plus |
arm_2L | 19049287..19049364 | 78..155 | 100 | -> | Plus |
arm_2L | 19049422..19049836 | 156..573 | 99 | | Plus |
BO17678.complete Sequence
583 bp assembled on 2006-10-11
GenBank Submission: FJ634190
> BO17678.complete
GAAGTTATCAGTCGACATGTGGTCCGACACAATATTAATTGTTTTTATAT
CGGTTTGCACCGCCTTCCTGGGCGAAGGTCTTACATGGGTGATGGTTTAC
CGGACGGAGAAGTACCAAAAGCTAAAGACCGAGGTGGAAAAGCAGAGCAA
AAAGCTGGAGCGCCGCAAGGAAATCCATGGGGACTCCCTGGACAAAGCGG
TAAAGAAGAAGATCGAGCGCGACGAGGAAAAACTGAAAAACAACAACCGC
GATCTCTCGCTTGTCAAGATGAAGACCATGTTCGCCACGGGATTCGCCTT
CACCGCCCTGTTGAGTATGTTCAACAGCATCTTCGACGGCCGTGTGGTTG
CCCAGCTGCCCTTCACACCAATCTCCTGGATCCAGGGGTTAAGTCACCGA
AATTTGTCCGGTGACGACTATACGGACTGCTCCTTTATATTCCTCTACAT
CCTGTGCACCATGTCCATTCGTCAGAACATCCAAAAGCTTCTGGGTTTTG
CCCCATCGCGCGCCGCAAGCAAGCAGGGTGTAGGTCTGTTTGGTCCTGCT
CCAGGCCAGTTCAAAGCAAGCTTTCTAGACCAT
BO17678.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10470-RA | 552 | CG10470-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10470-RA | 701 | CG10470-RA | 100..648 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19049422..19049831 | 156..565 | 2050 | 100 | Plus |
2L | 23513712 | 2L | 19049285..19049364 | 76..155 | 400 | 100 | Plus |
2L | 23513712 | 2L | 19049175..19049237 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:08:29 has no hits.
BO17678.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:19 Download gff for
BO17678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-RA | 1..552 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:35 Download gff for
BO17678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-RA | 97..650 | 17..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:44 Download gff for
BO17678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-RA | 100..648 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:19 Download gff for
BO17678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-RA | 97..650 | 17..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:18 Download gff for
BO17678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-RA | 100..648 | 17..567 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:18 Download gff for
BO17678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19049287..19049364 | 78..155 | 100 | -> | Plus |
2L | 19049175..19049235 | 17..77 | 100 | -> | Plus |
2L | 19049422..19049831 | 156..567 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:44 Download gff for
BO17678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19049175..19049235 | 17..77 | 100 | -> | Plus |
arm_2L | 19049287..19049364 | 78..155 | 100 | -> | Plus |
arm_2L | 19049422..19049831 | 156..567 | 99 | | Plus |
BO17678.pep Sequence
Translation from 16 to 583
> BO17678.pep
MWSDTILIVFISVCTAFLGEGLTWVMVYRTEKYQKLKTEVEKQSKKLERR
KEIHGDSLDKAVKKKIERDEEKLKNNNRDLSLVKMKTMFATGFAFTALLS
MFNSIFDGRVVAQLPFTPISWIQGLSHRNLSGDDYTDCSFIFLYILCTMS
IRQNIQKLLGFAPSRAASKQGVGLFGPAPGQFKASFLDH
BO17678.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10470-PA | 183 | CG10470-PA | 1..183 | 1..183 | 944 | 100 | Plus |