Clone Sequence Records
BO17687.3prime Sequence
767 bp (702 high quality bases) assembled on 2006-10-13
> BO17687.3prime
ATGGTCTAGAAAGCTTGCCATCAGCTTCTGCTTGGCACAATCGGGGCACA
GGATATCGGGTCCGTCGGTGATGAAGCCACGACCAACCAGACTAGCCTTG
CAGCTGGCACACACAAAGCAGTCGTGATGCCAGTGGCGATCCTCAAACGA
TATGAAGCGTGTGCCGCCAATGCCTGTTATGGGCTTCACACAGGCCGTGC
ACCTTTTGGCAAAGAGCTCGCCAAAGCACTCCGCACAATAGGGCTTCTCG
TCGCGGCTGGTGAATCGCTGGCCAGCTAGCGTGATGTTGCAGTGGGTGCA
GGTGAAGCACTCGCGATGCCACGGCTCGTTCTTGTAGGTAACACCTCCCG
AGGTGATGACCTTATTGCACTTGATGCAGCGCGTGGCAAACTTCTCCTCG
TAGCAGCCGGCGCAATAGATCTCCTGCTCCCGCGGGATGAAGGACTTGGT
CCCAATGGCCGTCTTGCAGACGCAGCAGCAGAAGCAATTCTCGTGCCACT
GCCTGGTTTTATACTCCATTTTCTTGGTGCCTGCTTTGCTGGCACGCGGA
TCGCCGAGGCGACAATAATCGCCCAACTGGCAATAGAAGTTCCGGTTCTC
CTCCACGGCGGAGGCGTTGGGCAGAAACATGCTCAGCACGGCGATATCCT
CGTTATTATCCTTGGCCTTCTTGATCCGCTCCGCGCCAATGGTCTTGGTT
TGCAGGTGAAGTCGAGACTTCATTCTCGAACTAAGTACATCCACGTCGGT
CATGTCGACTGATAACT
BO17687.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32171-PA | 738 | Lmpt-RA | 1..735 | 753..19 | 3675 | 100 | Minus |
CG32171-PE | 738 | Lmpt-RE | 1..735 | 753..19 | 3675 | 100 | Minus |
CG32171-PF | 861 | Lmpt-RF | 343..858 | 534..19 | 2580 | 100 | Minus |
CG32171-PG | 1680 | Lmpt-RG | 1162..1677 | 534..19 | 2580 | 100 | Minus |
CG32171-PH | 1677 | Lmpt-RH | 1159..1674 | 534..19 | 2580 | 100 | Minus |
CG32171-PB | 1680 | Lmpt-RB | 1162..1677 | 534..19 | 2580 | 100 | Minus |
CG32171-PD | 1677 | Lmpt-RD | 1159..1674 | 534..19 | 2580 | 100 | Minus |
CG32171-PC | 1020 | Lmpt-RC | 502..1017 | 534..19 | 2580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lmpt-RI | 1814 | CG32171-RI | 183..918 | 754..19 | 3680 | 100 | Minus |
Lmpt-RE | 1832 | CG42679-RE | 201..936 | 754..19 | 3680 | 100 | Minus |
Lmpt-RA | 1810 | CG42679-RA | 179..914 | 754..19 | 3680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16919479..16919703 | 754..530 | 1125 | 100 | Minus |
3L | 28110227 | 3L | 16921178..16921367 | 362..173 | 950 | 100 | Minus |
3L | 28110227 | 3L | 16920879..16921053 | 533..359 | 875 | 100 | Minus |
3L | 28110227 | 3L | 16921430..16921591 | 180..19 | 795 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:05:34 has no hits.
BO17687.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:37 Download gff for
BO17687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32171-PE | 1..738 | 15..753 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:31:53 Download gff for
BO17687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RA | 172..918 | 14..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:36 Download gff for
BO17687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RA | 172..918 | 14..762 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:36 Download gff for
BO17687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16921180..16921366 | 174..360 | 100 | -> | Minus |
3L | 16921437..16921595 | 14..173 | 98 | | Minus |
3L | 16919472..16919702 | 531..762 | 98 | -> | Minus |
3L | 16920882..16921051 | 361..530 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:31:53 Download gff for
BO17687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16914537..16914695 | 14..173 | 98 | | Minus |
arm_3L | 16912572..16912802 | 531..762 | 98 | -> | Minus |
arm_3L | 16913982..16914151 | 361..530 | 100 | -> | Minus |
arm_3L | 16914280..16914466 | 174..360 | 100 | -> | Minus |
BO17687.complete Sequence
769 bp assembled on 2008-08-15
GenBank Submission: FJ634191
> BO17687.complete
GAAGTTATCAGTCGACATGACCGACGTGGATGTACTTAGTTCGAGAATGA
AGTCTCGACTTCACCTGCAAACCAAGACCATTGGCGCGGAGCGGATCAAG
AAGGCCAAGGATAATAACGAGGATATCGCCGTGCTGAGCATGTTTCTGCC
CAACGCCTCCGCCGTGGAGGAGAACCGGAACTTCTATTGCCAGTTGGGCG
ATTATTGTCGCCTCGGCGATCCGCGTGCCAGCAAAGCAGGCACCAAGAAA
ATGGAGTATAAAACCAGGCAGTGGCACGAGAATTGCTTCTGCTGCTGCGT
CTGCAAGACGGCCATTGGGACCAAGTCCTTCATCCCGCGGGAGCAGGAGA
TCTATTGCGCCGGCTGCTACGAGGAGAAGTTTGCCACGCGCTGCATCAAG
TGCAATAAGGTCATCACCTCGGGAGGTGTTACCTACAAGAACGAGCCGTG
GCATCGCGAGTGCTTCACCTGCACCCACTGCAACATCACGCTAGCTGGCC
AGCGATTCACCAGCCGCGACGAGAAGCCCTATTGTGCGGAGTGCTTTGGC
GAGCTCTTTGCCAAAAGGTGCACGGCCTGTGTGAAGCCCATAACAGGCAT
TGGCGGCACACGCTTCATATCGTTTGAGGATCGCCACTGGCATCACGACT
GCTTTGTGTGTGCCAGCTGCAAGGCTAGTCTGGTTGGTCGTGGCTTCATC
ACCGACGGACCCGATATCCTGTGCCCCGATTGTGCCAAGCAGAAGCTGAT
GGCAAGCTTTCTAGACCAT
BO17687.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lmpt-RI | 738 | CG42679-PI | 1..735 | 17..751 | 3675 | 100 | Plus |
Lmpt-RE | 738 | CG42679-PE | 1..735 | 17..751 | 3675 | 100 | Plus |
Lmpt-RA | 738 | CG42679-PA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lmpt-RI | 1814 | CG32171-RI | 183..918 | 16..751 | 3680 | 100 | Plus |
Lmpt-RE | 1832 | CG42679-RE | 201..936 | 16..751 | 3680 | 100 | Plus |
Lmpt-RA | 1810 | CG42679-RA | 179..914 | 16..751 | 3680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:05:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16919479..16919703 | 16..240 | 1125 | 100 | Plus |
3L | 28110227 | 3L | 16921178..16921367 | 408..597 | 950 | 100 | Plus |
3L | 28110227 | 3L | 16920879..16921053 | 237..411 | 875 | 100 | Plus |
3L | 28110227 | 3L | 16921430..16921591 | 590..751 | 795 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:05:53 has no hits.
BO17687.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:48 Download gff for
BO17687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RE | 194..940 | 8..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:36 Download gff for
BO17687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RA | 180..914 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:29 Download gff for
BO17687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RE | 202..936 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:42 Download gff for
BO17687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RA | 180..914 | 17..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:42 Download gff for
BO17687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16921437..16921591 | 597..753 | 98 | | Plus |
3L | 16920882..16921051 | 240..409 | 100 | -> | Plus |
3L | 16921180..16921366 | 410..596 | 100 | -> | Plus |
3L | 16919480..16919702 | 17..239 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:36 Download gff for
BO17687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16912580..16912802 | 17..239 | 100 | -> | Plus |
arm_3L | 16913982..16914151 | 240..409 | 100 | -> | Plus |
arm_3L | 16914280..16914466 | 410..596 | 100 | -> | Plus |
arm_3L | 16914537..16914691 | 597..753 | 98 | | Plus |
BO17687.pep Sequence
Translation from 16 to 769
> BO17687.pep
MTDVDVLSSRMKSRLHLQTKTIGAERIKKAKDNNEDIAVLSMFLPNASAV
EENRNFYCQLGDYCRLGDPRASKAGTKKMEYKTRQWHENCFCCCVCKTAI
GTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGGVTYKNEPWHRECF
TCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTACVKPITGIGGTRF
ISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCPDCAKQKLMASFLD
H
BO17687.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lmpt-PI | 245 | CG42679-PI | 1..245 | 1..245 | 1371 | 100 | Plus |
Lmpt-PE | 245 | CG32171-PE | 1..245 | 1..245 | 1371 | 100 | Plus |
Lmpt-PA | 245 | CG32171-PA | 1..245 | 1..245 | 1371 | 100 | Plus |
Lmpt-PO | 286 | CG42679-PO | 114..286 | 73..245 | 999 | 99.4 | Plus |
Lmpt-PF | 286 | CG32171-PF | 114..286 | 73..245 | 999 | 99.4 | Plus |
Lmpt-PO | 286 | CG42679-PO | 3..162 | 84..243 | 335 | 34 | Plus |
Lmpt-PO | 286 | CG42679-PO | 2..97 | 142..239 | 219 | 39.8 | Plus |