Clone BO17687 Report

Search the DGRC for BO17687

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:176
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptLmpt-RA
Protein status:BO17687.pep: Imported from assembly
Sequenced Size:769

Clone Sequence Records

BO17687.3prime Sequence

767 bp (702 high quality bases) assembled on 2006-10-13

> BO17687.3prime
ATGGTCTAGAAAGCTTGCCATCAGCTTCTGCTTGGCACAATCGGGGCACA
GGATATCGGGTCCGTCGGTGATGAAGCCACGACCAACCAGACTAGCCTTG
CAGCTGGCACACACAAAGCAGTCGTGATGCCAGTGGCGATCCTCAAACGA
TATGAAGCGTGTGCCGCCAATGCCTGTTATGGGCTTCACACAGGCCGTGC
ACCTTTTGGCAAAGAGCTCGCCAAAGCACTCCGCACAATAGGGCTTCTCG
TCGCGGCTGGTGAATCGCTGGCCAGCTAGCGTGATGTTGCAGTGGGTGCA
GGTGAAGCACTCGCGATGCCACGGCTCGTTCTTGTAGGTAACACCTCCCG
AGGTGATGACCTTATTGCACTTGATGCAGCGCGTGGCAAACTTCTCCTCG
TAGCAGCCGGCGCAATAGATCTCCTGCTCCCGCGGGATGAAGGACTTGGT
CCCAATGGCCGTCTTGCAGACGCAGCAGCAGAAGCAATTCTCGTGCCACT
GCCTGGTTTTATACTCCATTTTCTTGGTGCCTGCTTTGCTGGCACGCGGA
TCGCCGAGGCGACAATAATCGCCCAACTGGCAATAGAAGTTCCGGTTCTC
CTCCACGGCGGAGGCGTTGGGCAGAAACATGCTCAGCACGGCGATATCCT
CGTTATTATCCTTGGCCTTCTTGATCCGCTCCGCGCCAATGGTCTTGGTT
TGCAGGTGAAGTCGAGACTTCATTCTCGAACTAAGTACATCCACGTCGGT
CATGTCGACTGATAACT

BO17687.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG32171-PA 738 Lmpt-RA 1..735 753..19 3675 100 Minus
CG32171-PE 738 Lmpt-RE 1..735 753..19 3675 100 Minus
CG32171-PF 861 Lmpt-RF 343..858 534..19 2580 100 Minus
CG32171-PG 1680 Lmpt-RG 1162..1677 534..19 2580 100 Minus
CG32171-PH 1677 Lmpt-RH 1159..1674 534..19 2580 100 Minus
CG32171-PB 1680 Lmpt-RB 1162..1677 534..19 2580 100 Minus
CG32171-PD 1677 Lmpt-RD 1159..1674 534..19 2580 100 Minus
CG32171-PC 1020 Lmpt-RC 502..1017 534..19 2580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-RI 1814 CG32171-RI 183..918 754..19 3680 100 Minus
Lmpt-RE 1832 CG42679-RE 201..936 754..19 3680 100 Minus
Lmpt-RA 1810 CG42679-RA 179..914 754..19 3680 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16919479..16919703 754..530 1125 100 Minus
3L 28110227 3L 16921178..16921367 362..173 950 100 Minus
3L 28110227 3L 16920879..16921053 533..359 875 100 Minus
3L 28110227 3L 16921430..16921591 180..19 795 99.4 Minus
Blast to na_te.dros performed on 2015-02-13 07:05:34 has no hits.

BO17687.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:37 Download gff for BO17687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32171-PE 1..738 15..753 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:31:53 Download gff for BO17687.3prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RA 172..918 14..762 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:36 Download gff for BO17687.3prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RA 172..918 14..762 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:36 Download gff for BO17687.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16921180..16921366 174..360 100 -> Minus
3L 16921437..16921595 14..173 98   Minus
3L 16919472..16919702 531..762 98 -> Minus
3L 16920882..16921051 361..530 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:31:53 Download gff for BO17687.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16914537..16914695 14..173 98   Minus
arm_3L 16912572..16912802 531..762 98 -> Minus
arm_3L 16913982..16914151 361..530 100 -> Minus
arm_3L 16914280..16914466 174..360 100 -> Minus

BO17687.complete Sequence

769 bp assembled on 2008-08-15

GenBank Submission: FJ634191

> BO17687.complete
GAAGTTATCAGTCGACATGACCGACGTGGATGTACTTAGTTCGAGAATGA
AGTCTCGACTTCACCTGCAAACCAAGACCATTGGCGCGGAGCGGATCAAG
AAGGCCAAGGATAATAACGAGGATATCGCCGTGCTGAGCATGTTTCTGCC
CAACGCCTCCGCCGTGGAGGAGAACCGGAACTTCTATTGCCAGTTGGGCG
ATTATTGTCGCCTCGGCGATCCGCGTGCCAGCAAAGCAGGCACCAAGAAA
ATGGAGTATAAAACCAGGCAGTGGCACGAGAATTGCTTCTGCTGCTGCGT
CTGCAAGACGGCCATTGGGACCAAGTCCTTCATCCCGCGGGAGCAGGAGA
TCTATTGCGCCGGCTGCTACGAGGAGAAGTTTGCCACGCGCTGCATCAAG
TGCAATAAGGTCATCACCTCGGGAGGTGTTACCTACAAGAACGAGCCGTG
GCATCGCGAGTGCTTCACCTGCACCCACTGCAACATCACGCTAGCTGGCC
AGCGATTCACCAGCCGCGACGAGAAGCCCTATTGTGCGGAGTGCTTTGGC
GAGCTCTTTGCCAAAAGGTGCACGGCCTGTGTGAAGCCCATAACAGGCAT
TGGCGGCACACGCTTCATATCGTTTGAGGATCGCCACTGGCATCACGACT
GCTTTGTGTGTGCCAGCTGCAAGGCTAGTCTGGTTGGTCGTGGCTTCATC
ACCGACGGACCCGATATCCTGTGCCCCGATTGTGCCAAGCAGAAGCTGAT
GGCAAGCTTTCTAGACCAT

BO17687.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-RI 738 CG42679-PI 1..735 17..751 3675 100 Plus
Lmpt-RE 738 CG42679-PE 1..735 17..751 3675 100 Plus
Lmpt-RA 738 CG42679-PA 1..735 17..751 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-RI 1814 CG32171-RI 183..918 16..751 3680 100 Plus
Lmpt-RE 1832 CG42679-RE 201..936 16..751 3680 100 Plus
Lmpt-RA 1810 CG42679-RA 179..914 16..751 3680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16919479..16919703 16..240 1125 100 Plus
3L 28110227 3L 16921178..16921367 408..597 950 100 Plus
3L 28110227 3L 16920879..16921053 237..411 875 100 Plus
3L 28110227 3L 16921430..16921591 590..751 795 99.4 Plus
Blast to na_te.dros performed on 2014-11-27 11:05:53 has no hits.

BO17687.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:48 Download gff for BO17687.complete
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RE 194..940 8..756 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:36 Download gff for BO17687.complete
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RA 180..914 17..753 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:29 Download gff for BO17687.complete
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RE 202..936 17..753 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:42 Download gff for BO17687.complete
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RA 180..914 17..753 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:42 Download gff for BO17687.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16921437..16921591 597..753 98   Plus
3L 16920882..16921051 240..409 100 -> Plus
3L 16921180..16921366 410..596 100 -> Plus
3L 16919480..16919702 17..239 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:36 Download gff for BO17687.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16912580..16912802 17..239 100 -> Plus
arm_3L 16913982..16914151 240..409 100 -> Plus
arm_3L 16914280..16914466 410..596 100 -> Plus
arm_3L 16914537..16914691 597..753 98   Plus

BO17687.pep Sequence

Translation from 16 to 769

> BO17687.pep
MTDVDVLSSRMKSRLHLQTKTIGAERIKKAKDNNEDIAVLSMFLPNASAV
EENRNFYCQLGDYCRLGDPRASKAGTKKMEYKTRQWHENCFCCCVCKTAI
GTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGGVTYKNEPWHRECF
TCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTACVKPITGIGGTRF
ISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCPDCAKQKLMASFLD
H

BO17687.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-PI 245 CG42679-PI 1..245 1..245 1371 100 Plus
Lmpt-PE 245 CG32171-PE 1..245 1..245 1371 100 Plus
Lmpt-PA 245 CG32171-PA 1..245 1..245 1371 100 Plus
Lmpt-PO 286 CG42679-PO 114..286 73..245 999 99.4 Plus
Lmpt-PF 286 CG32171-PF 114..286 73..245 999 99.4 Plus
Lmpt-PO 286 CG42679-PO 3..162 84..243 335 34 Plus
Lmpt-PO 286 CG42679-PO 2..97 142..239 219 39.8 Plus