Clone BO17701 Report

Search the DGRC for BO17701

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:1
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO17701.pep: validated full length
Sequenced Size:343

Clone Sequence Records

BO17701.5prime Sequence

341 bp (341 high quality bases) assembled on 2006-10-13

> BO17701.5prime
GAAGTTATCAGTCGACATGAGATATAAGATTCAATATCTCTCAAATTTAT
ATTATCCTATGCACTTCTTAAAGCTTATTTTGGGGATTCAAAAGATTCTT
GTTTACTTTTTGGCATGCAATTCTAAGGTTTTCAACGATTTTCTTCCAGT
GCAGCTGCAACTTTTGCCATCGCCTTCAGTTTCTTCTCCTCTGTCGCCTT
TTGGTCTATGCTCAGCTTTGAGCTCAGCAGTTTTTGGGTTCCAATTCGCC
ACCCCTAGTCCCAGCCCCACCCCCTCTGTCACACCCCTAAGCCCTACCCC
GTTTCCCCCCGTTCCCCTCTACCCTGCAAGCTTTCTAGACC

BO17701.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31047-PA 312 CG31047-RA 1..309 17..325 1545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-01-31 10:23:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28985789..28986097 325..17 1545 100 Minus
Blast to na_te.dros performed 2015-01-31 10:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 6066..6202 164..28 117 56.8 Minus
blood 7410 blood BLOOD 7410bp 3226..3286 78..15 106 65.6 Minus

BO17701.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:44 Download gff for BO17701.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31047-PA 1..312 17..326 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:47 Download gff for BO17701.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28985789..28986100 12..325 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:47 Download gff for BO17701.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28985789..28986100 12..325 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:58 Download gff for BO17701.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24811511..24811822 12..325 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:58 Download gff for BO17701.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24811511..24811822 12..325 99   Minus

BO17701.3prime Sequence

341 bp (341 high quality bases) assembled on 2006-10-13

> BO17701.3prime
ATGGTCTAGAAAGCTTGCAGGGTAGAGGGGAACGGGGGGAAACGGGGTAG
GGCTTAGGGGTGTGACAGAGGGGGTGGGGCTGGGACTAGGGGTGGCGAAT
TGGAACCCAAAAACTGCTGAGCTCAAAGCTGAGCATAGACCAAAAGGCGA
CAGAGGAGAAGAAACTGAAGGCGATGGCAAAACTTGCAGCTGCACTGGAA
GAAAATCGTTGAAAACCTTAGAATTGCATGCCAAAAAGTAAACAAGAATC
TTTTGAATCCCCAAAATAAGCTTTAAGAAGTGCATAGGATAATATAAATT
TGAGAGATATTGAATCTTATATCTCATGTCGACTGATAACT

BO17701.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG31047-PA 312 CG31047-RA 1..309 327..19 1520 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 17:25:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28985789..28986097 19..327 1530 99.7 Plus
Blast to na_te.dros performed 2015-02-10 17:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 6076..6202 190..316 112 57.4 Plus
blood 7410 blood BLOOD 7410bp 3226..3286 266..329 106 65.6 Plus

BO17701.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:43 Download gff for BO17701.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31047-PA 1..312 18..327 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:20 Download gff for BO17701.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 28985789..28986100 19..332 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:20 Download gff for BO17701.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 28985789..28986100 19..332 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:49:52 Download gff for BO17701.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24811511..24811822 19..332 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:49:52 Download gff for BO17701.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24811511..24811822 19..332 98   Plus

BO17701.complete Sequence

343 bp assembled on 2006-10-11

GenBank Submission: FJ634192

> BO17701.complete
GAAGTTATCAGTCGACATGAGATATAAGATTCAATATCTCTCAAATTTAT
ATTATCCTATGCACTTCTTAAAGCTTATTTTGGGGATTCAAAAGATTCTT
GTTTACTTTTTGGCATGCAATTCTAAGGTTTTCAACGATTTTCTTCCAGT
GCAGCTGCAACTTTTGCCATCGCCTTCAGTTTCTTCTCCTCTGTCGCCTT
TTGGTCTATGCTCAGCTTTGAGCTCAGCAGTTTTTGGGTTCCAATTCGCC
ACCCCTAGTCCCAGCCCCACCCCCTCTGTCACACCCCTAAGCCCTACCCC
GTTTCCCCCCGTTCCCCTCTACCCTGCAAGCTTTCTAGACCAT

BO17701.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 00:15:43 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 00:15:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28985789..28986097 325..17 1545 100 Minus
Blast to na_te.dros performed 2014-11-28 00:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 6066..6202 164..28 117 56.8 Minus
blood 7410 blood BLOOD 7410bp 3226..3286 78..15 106 65.6 Minus

BO17701.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:13 Download gff for BO17701.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 10..28 160..178 94   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 22:55:13 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:47 Download gff for BO17701.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28985787..28986097 17..327 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:47 Download gff for BO17701.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28985787..28986097 17..327 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:03 Download gff for BO17701.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24811509..24811819 17..327 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:03 Download gff for BO17701.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24811509..24811819 17..327 99   Minus

BO17701.pep Sequence

Translation from 16 to 343

> BO17701.pep
MRYKIQYLSNLYYPMHFLKLILGIQKILVYFLACNSKVFNDFLPVQLQLL
PSPSVSSPLSPFGLCSALSSAVFGFQFATPSPSPTPSVTPLSPTPFPPVP
LYPASFLDH
Sequence BO17701.pep has no blast hits.