Clone Sequence Records
BO17701.5prime Sequence
341 bp (341 high quality bases) assembled on 2006-10-13
> BO17701.5prime
GAAGTTATCAGTCGACATGAGATATAAGATTCAATATCTCTCAAATTTAT
ATTATCCTATGCACTTCTTAAAGCTTATTTTGGGGATTCAAAAGATTCTT
GTTTACTTTTTGGCATGCAATTCTAAGGTTTTCAACGATTTTCTTCCAGT
GCAGCTGCAACTTTTGCCATCGCCTTCAGTTTCTTCTCCTCTGTCGCCTT
TTGGTCTATGCTCAGCTTTGAGCTCAGCAGTTTTTGGGTTCCAATTCGCC
ACCCCTAGTCCCAGCCCCACCCCCTCTGTCACACCCCTAAGCCCTACCCC
GTTTCCCCCCGTTCCCCTCTACCCTGCAAGCTTTCTAGACC
BO17701.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31047-PA | 312 | CG31047-RA | 1..309 | 17..325 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-01-31 10:23:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:23:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28985789..28986097 | 325..17 | 1545 | 100 | Minus |
Blast to na_te.dros performed 2015-01-31 10:23:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 6066..6202 | 164..28 | 117 | 56.8 | Minus |
blood | 7410 | blood BLOOD 7410bp | 3226..3286 | 78..15 | 106 | 65.6 | Minus |
BO17701.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:44 Download gff for
BO17701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31047-PA | 1..312 | 17..326 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:47 Download gff for
BO17701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28985789..28986100 | 12..325 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:47 Download gff for
BO17701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28985789..28986100 | 12..325 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:58 Download gff for
BO17701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24811511..24811822 | 12..325 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:58 Download gff for
BO17701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24811511..24811822 | 12..325 | 99 | | Minus |
BO17701.3prime Sequence
341 bp (341 high quality bases) assembled on 2006-10-13
> BO17701.3prime
ATGGTCTAGAAAGCTTGCAGGGTAGAGGGGAACGGGGGGAAACGGGGTAG
GGCTTAGGGGTGTGACAGAGGGGGTGGGGCTGGGACTAGGGGTGGCGAAT
TGGAACCCAAAAACTGCTGAGCTCAAAGCTGAGCATAGACCAAAAGGCGA
CAGAGGAGAAGAAACTGAAGGCGATGGCAAAACTTGCAGCTGCACTGGAA
GAAAATCGTTGAAAACCTTAGAATTGCATGCCAAAAAGTAAACAAGAATC
TTTTGAATCCCCAAAATAAGCTTTAAGAAGTGCATAGGATAATATAAATT
TGAGAGATATTGAATCTTATATCTCATGTCGACTGATAACT
BO17701.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31047-PA | 312 | CG31047-RA | 1..309 | 327..19 | 1520 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 17:25:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28985789..28986097 | 19..327 | 1530 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-10 17:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 6076..6202 | 190..316 | 112 | 57.4 | Plus |
blood | 7410 | blood BLOOD 7410bp | 3226..3286 | 266..329 | 106 | 65.6 | Plus |
BO17701.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:43 Download gff for
BO17701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31047-PA | 1..312 | 18..327 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:20 Download gff for
BO17701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28985789..28986100 | 19..332 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:20 Download gff for
BO17701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28985789..28986100 | 19..332 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:49:52 Download gff for
BO17701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24811511..24811822 | 19..332 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:49:52 Download gff for
BO17701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24811511..24811822 | 19..332 | 98 | | Plus |
BO17701.complete Sequence
343 bp assembled on 2006-10-11
GenBank Submission: FJ634192
> BO17701.complete
GAAGTTATCAGTCGACATGAGATATAAGATTCAATATCTCTCAAATTTAT
ATTATCCTATGCACTTCTTAAAGCTTATTTTGGGGATTCAAAAGATTCTT
GTTTACTTTTTGGCATGCAATTCTAAGGTTTTCAACGATTTTCTTCCAGT
GCAGCTGCAACTTTTGCCATCGCCTTCAGTTTCTTCTCCTCTGTCGCCTT
TTGGTCTATGCTCAGCTTTGAGCTCAGCAGTTTTTGGGTTCCAATTCGCC
ACCCCTAGTCCCAGCCCCACCCCCTCTGTCACACCCCTAAGCCCTACCCC
GTTTCCCCCCGTTCCCCTCTACCCTGCAAGCTTTCTAGACCAT
BO17701.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 00:15:43 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 00:15:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28985789..28986097 | 325..17 | 1545 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 6066..6202 | 164..28 | 117 | 56.8 | Minus |
blood | 7410 | blood BLOOD 7410bp | 3226..3286 | 78..15 | 106 | 65.6 | Minus |
BO17701.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:13 Download gff for
BO17701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 10..28 | 160..178 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 22:55:13 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:47 Download gff for
BO17701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28985787..28986097 | 17..327 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:47 Download gff for
BO17701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28985787..28986097 | 17..327 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:03 Download gff for
BO17701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24811509..24811819 | 17..327 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:03 Download gff for
BO17701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24811509..24811819 | 17..327 | 99 | | Minus |
BO17701.pep Sequence
Translation from 16 to 343
> BO17701.pep
MRYKIQYLSNLYYPMHFLKLILGIQKILVYFLACNSKVFNDFLPVQLQLL
PSPSVSSPLSPFGLCSALSSAVFGFQFATPSPSPTPSVTPLSPTPFPPVP
LYPASFLDH
Sequence BO17701.pep has no blast hits.