Clone BO17702 Report

Search the DGRC for BO17702

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG6686-RB
Protein status:BO17702.pep: validated full length
Sequenced Size:2926

Clone Sequence Records

BO17702.3prime Sequence

833 bp (778 high quality bases) assembled on 2006-10-13

> BO17702.3prime
ATGGTCTAGAAAGCTTGCCTTAAATTTGGCTATTGCGGAGCCACTGACAC
CTGGTACATTTTTGTTGTTGCCACTGAGCACCACGTAAGCGGTCTTCGTC
TCCTTTTGCTTCTGCTGCAACATGGTCAGTGTGCCCAAGGGTGTGTCTGT
CGAACTCATGGTTTTCATTAGCCCATCCTGCTCCATTTTCTTGAGACGCT
TCTCAATCTTATTCTTGCCGGGCCCCTTGCCATGGAACTTATGTGACAAG
TAGCGGAAAGCCTCTTTGAGGTTCAATATGCGGCCATTGTCATCGATATA
ATCCAACTTGACATTGGGCTTGAAGGTCTCCTTGTCCTTAAAGTCTGTAA
TCGGTCCAAAGTGGAAGCGATCGCGACGGCCAACCTTCTCGTCCTCACCA
GCCGCTTTATCCTCAATGGAATAGTTCTTGGCCTGCAGATGGGCCATTTT
TGTGTTGCTAGGTCTGTTCTTTTCCTCCTTTTCAAGGTAACCCTTGGACA
GCGCCAATCGCAGAGCATTCGCTACACCAGCTCCCACATCGGGCTCCTCG
TCTAGAATGGCACGATCTTCCAGGTCTTCACCCAGATTATCCAAATCGGC
GGGCTGCATGACTTCATCGGGATTGACCGAATTCCAGGTGCCGTGACTCA
GGGCAGGCTCATCGGTATGTGTTTCCATATGCTCCTCCGGCTGTTCGGTC
TTGTCAAAGTCCATCATGTCATTGGAGTCCTCATTACGGTTGCCCGCCAT
ACCGTACGTGGGAATGTCACCCAGAGTGCGGCAAAACTCAGCTGTGGCGT
TAAGACAAAGTTGCCATCGACGCCGGTAAGGAC

BO17702.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-PA 2913 CG6686-RA 2095..2910 833..19 4015 99.7 Minus
CG6686-PB 2895 CG6686-RB 2077..2892 833..19 4015 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-RC 3192 CG6686-RC 2194..3009 833..19 4040 99.8 Minus
CG6686-RB 3169 CG6686-RB 2171..2986 833..19 4040 99.8 Minus
CG6686-RA 3187 CG6686-RA 2189..3004 833..19 4040 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11985007..11985443 398..833 2120 99.5 Plus
2L 23513712 2L 11984725..11984951 172..398 1135 100 Plus
2L 23513712 2L 11984510..11984663 19..172 770 100 Plus
Blast to na_te.dros performed 2015-02-13 13:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 225..271 139..93 109 70.2 Minus

BO17702.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:45 Download gff for BO17702.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6686-PB 2077..2895 18..833 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:06:30 Download gff for BO17702.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6686-RA 2189..3004 19..833 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:58 Download gff for BO17702.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6686-RA 2189..3004 19..833 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:58 Download gff for BO17702.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11984510..11984662 19..171 100 <- Plus
2L 11984725..11984950 172..397 100 <- Plus
2L 11985007..11985443 398..833 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:06:30 Download gff for BO17702.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11984510..11984662 19..171 100 <- Plus
arm_2L 11984725..11984950 172..397 100 <- Plus
arm_2L 11985007..11985443 398..833 99   Plus

BO17702.5prime Sequence

807 bp (692 high quality bases) assembled on 2006-10-13

> BO17702.5prime
GAAGTTATCAGTCGACATGGGTTCCTCGTCGTCGGGAAAGAAACACAAGA
AGGACAAGAAGAACCGTCATCGCTCGCGATCGTCGGAGCGACCGCGGCGC
GTCACAGAGGACGAGGATGTCACACTGGATCTCACCGACGACTCCTCGTC
GCGGCACAGACACCACAAGCACAAGAAGCACAAGGAGCACCGCCACAAGC
ACCACAAGCAAAAGGAGCGCGAGCGCGCGAACGAGGTCATCTCCCTAGAG
GAATCGGACTCGGATAGTTCCGACTGCGTGGAGGTGCCGGTACAGGCGCA
GGTGCAGGCGCAGGCCAAGTTGAGGGACGCCAGAGAATCGTCCAATCGTG
ACAAGGAGCGGGATTCTGGACGCGATCGTGAACTCCTAAGAGAAAGGGAG
CGAGAACGAGATCGTGAGCGGGAGAGGGATCGGGATCGGGAAAAGGAGCG
CGAACGGGAGCGTGAGAAGGAGCGTCTCAGGGAGCGGGAGGAGCGCGAGA
GAGAGCGTGAGAAGGAACGTATCAGAGAACGCGAGAAAGAACGCCTTAGG
GAGCGCGAGAGGGAGCGGGAACGCGAACGTGTACGGGAGCTCACAGCTCC
TCCACCACCCCAAATCTCCAAGCATGCCGAATATGAGTCTAGGCGAGAGC
GTGAGATCGAACGGGAACGGGACGCCCGCAAGCGATCTGGCAGAGAAACG
TGAAGGGAACGTAATAGGGAACGGTCCCGATCCCAGTCGCCAGCATCGTC
GTCGCGTAAACCAGCCACTAAGGAACGCGAACCATCGTCTCGTTCCTTCT
CGCCAAT

BO17702.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-PB 2895 CG6686-RB 1..791 17..807 3880 99.7 Plus
CG6686-PA 2913 CG6686-RA 269..809 267..807 2630 99.6 Plus
CG6686-PA 2913 CG6686-RA 1..253 17..269 1265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-RB 3169 CG6686-RB 95..885 17..807 3910 99.7 Plus
CG6686-RA 3187 CG6686-RA 95..903 17..807 3720 97.5 Plus
CG6686-RC 3192 CG6686-RC 95..908 17..807 3670 96.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11986847..11987387 807..267 2630 99.1 Minus
2L 23513712 2L 11987694..11987945 268..17 1260 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:42:36 has no hits.

BO17702.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:47 Download gff for BO17702.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6686-PB 1..791 17..807 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:14:10 Download gff for BO17702.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6686-RB 95..885 17..807 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:51 Download gff for BO17702.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6686-RB 95..885 17..807 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:51 Download gff for BO17702.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11986847..11987387 267..807 99 <- Minus
2L 11987696..11987945 17..266 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:14:10 Download gff for BO17702.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11986847..11987387 267..807 99 <- Minus
arm_2L 11987696..11987945 17..266 100   Minus

BO17702.complete Sequence

2926 bp assembled on 2007-03-23

GenBank Submission: FJ634193

> BO17702.complete
GAAGTTATCAGTCGACATGGGTTCCTCGTCGTCGGGAAAGAAACACAAGA
AGGACAAGAAGAACCGTCATCGCTCGCGATCGTCGGAGCGACCGCGGCGC
GTCACAGAGGACGAGGATGTCACACTGGATCTCACCGACGACTCCTCGTC
GCGGCACAGACACCACAAGCACAAGAAGCACAAGGAGCACCGCCACAAGC
ACCACAAGCAAAAGGAGCGCGAGCGCGCGAACGAGGTCATCTCCCTAGAG
GAATCGGACTCGGATAGTTCCGACTGCGTGGAGGTGCCGGTACAGGCGCA
GGTGCAGGCGCAGGCCAAGTTGAGGGACGCCAGAGAATCGTCCAATCGTG
ACAAGGAGCGGGATTCTGGACGCGATCGTGAACTCCTAAGAGAAAGGGAG
CGAGAACGAGATCGTGAGCGGGAGAGGGATCGGGATCGGGAAAAGGAGCG
CGAACGGGAGCGTGAGAAGGAGCGTCTCAGGGAGCGGGAGGAGCGCGAGA
GAGAGCGTGAGAAGGAACGTATCAGAGAACGCGAGAAAGAACGCCTTAGG
GAGCGCGAGAGGGAGCGGGAACGCGAACGTGTACGGGAGCTCACAGCTCC
TCCACCACCCCAAATCTCCAAGCATGCCGAATATGAGTCTAGGCGAGAGC
GTGAGATCGAACGGGAACGGGACGCCCGCAAGCGATCTGGCAGAGAACGT
GAAAGGGAACGTAATAGGGAACGGTCCCGATCCCAGTCGCCAGCATCGTC
GTCGCGTAAACCAGCCACTAAGGAACGCGAACCATCGTCTCGTTCCTTCT
CGCCAATACCAGAAAACGGAGCCGGCGATGTCCTGTCCATTACGGAGACG
AACAAACTTCGCGCCAAGCTGGGTCTGAAGCCACTCGAAGTTGATAGTGG
TCCCAGCAAGGCAGGCCCTCCGCCTGGAAGCAGTAGTCAAGGCGAGATCA
AAAAACCCCATGGCGAGGCCGATCTCTCCTCGTACAAGGATGAGTGGGGC
GAGTTCTTGCACAAGCCGGCCGACAATCTAAAGGAGAAAAGGGAGGCAGA
GAAGCTGCGCGAGAAACTCAAACAGCGCAAGGAGAAACGATTCTTAGAGG
AGCGCCTGGCTCGCATCAAAACACTGGGAGAGTCTGATGAGGAAACTGAC
AATGTGTCCAAGTGGGTGGACAAGAACAAGCGGGTTGTCAACGAACGCGA
GGAGGCGATGCGTAAGGCCAAAGAGTTGGAGGAACTGGATGAGGCCTTTG
GTGTTTCGGAGATTCTCGAGCAAGAGAAAACCAAAGCTCGTCAGCGAGCA
TATGGCGATAGCAATCTAAAGGGCCTGCGTGTGGATCATGATATGGATGA
TTTCGGCGAAGGACGCACTGTTATTCTAACTCTTAAGGATCAAGATGTGC
TTAACGAGGAGGAAGGCGACACTCTAGTCAATGTTAACATGGTCGACGAA
GAGCGCTATAAGAAGAATGTGGCCAACAAGAAGCAGAATCCGCTCAGTTA
TGGTTATAACGTATACGAGGAGCAGTACGATGAATTGGGCAATCCCATCG
AACGTTCAGTGCTGGAGAAGTACGATGATGAAATGGAAGGTCAGCCGAAA
AAGCGCAAGAACTTTGTGATTGGTGAGAATATGGATGAGGAGCGGGAGCA
CAGACGCAAGCTCCTGGAGATTAAGACCAAATTAGCCGGCAAGCGTTTGG
AAACCTTGGAGGACACCAATCTGCAGCTAGCATCGGACACTTACAGTGCA
GAAGAGTTGGCCAAATTTAAAAAGCCAAAGAAAAAGGTTAAGAAACTTCG
GCAGAAACTTAAAGCCGAGGATCTTGCGCCTTTGGCGATGGGCGAAGCAT
CAGGTTCTTCAGACTTTGGTAGTCGAGGTGGACGTTATCGTGATCACGAA
GATGCGGAAATGGAAGAGTTTAAACCCCAAATAAAAGTGGAAGTAGAGGA
TGATGATTTGGAACGTGTACTTGCCAAGGCTCGCAAACTAAAACAAAAGG
AGAATATCATCAAGAAGCCTTTGCCCGTCGACTTCGAAAGTATACAGCGG
GAGATAAAACCCGAACATGTGGAGGACACCGCATCAGGTGTGGTCCTTAC
CGGCGTCGATGGCAACATTGTCTTGAACGCCACAGCTGAGTTTTGCCGCA
CTCTGGGTGACATTCCCACGTACGGTATGGCGGGCAACCGTAATGAGGAC
TCCAATGACATGATGGACTTTGACAAGACCGAACAGCCGGAGGAGCATAT
GGAAACACATACCGATGAGCCTGCCCTGAGTCACGGCACCTGGAATTCGG
TCAATCCCGATGAAGTCATGCAGCCCGCCGATTTGGATAATCTGGGTGAA
GACCTGGAAGATCGTGCCATTCTAGACGAGGAGCCCGATGTGGGAGCTGG
TGTAGCGAATGCTCTGCGATTGGCGCTGTCCAAGGGTTACCTTGAAAAGG
AGGAAAAGAACAGACCTAGCAACACAAAAATGGCCCATCTGCAGGCCAAG
AACTATTCCATTGAGGATAAAGCGGCTGGTGAGGACGAGAAGGTTGGCCG
TCGCGATCGCTTCCACTTTGGACCGATTACAGACTTTAAGGACAAGGAGA
CCTTCAAGCCCAATGTCAAGTTGGATTATATCGATGACAATGGCCGCATA
TTGAACCTCAAAGAGGCTTTCCGCTACTTGTCACATAAGTTCCATGGCAA
GGGGCCCGGCAAGAATAAGATTGAGAAGCGTCTCAAGAAAATGGAGCAGG
ATGGGCTAATGAAAACCATGAGTTCGACAGACACACCCTTGGGCACACTG
ACCATGTTGCAGCAGAAGCAAAAGGAGACGAAGACCGCTTACGTGGTGCT
CAGTGGCAACAACAAAAATGTACCAGGTGTCAGTGGCTCCGCAATAGCCA
AATTTAAGGCAAGCTTTCTAGACCAT

BO17702.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-RB 2895 CG6686-PB 1..2892 17..2908 14460 100 Plus
CG6686-RA 2913 CG6686-PA 1..2910 17..2908 14245 99.4 Plus
CG6686-RC 330 CG6686-PC 1..252 17..268 1260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-RB 3169 CG6686-RB 95..2986 17..2908 14460 100 Plus
CG6686-RA 3187 CG6686-RA 95..3004 17..2908 14245 99.4 Plus
CG6686-RC 3192 CG6686-RC 364..3009 263..2908 13215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11986437..11987387 1217..267 4755 100 Minus
2L 23513712 2L 11985007..11985775 2529..1761 3830 99.9 Minus
2L 23513712 2L 11985833..11986382 1764..1215 2750 100 Minus
2L 23513712 2L 11987694..11987945 268..17 1260 100 Minus
2L 23513712 2L 11984725..11984951 2755..2529 1135 100 Minus
2L 23513712 2L 11984510..11984663 2908..2755 770 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:25:31 has no hits.

BO17702.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:08 Download gff for BO17702.complete
Subject Subject Range Query Range Percent Splice Strand
CG6686-RB 1..2895 17..2909 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:34 Download gff for BO17702.complete
Subject Subject Range Query Range Percent Splice Strand
CG6686-RB 91..2982 17..2908 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:38 Download gff for BO17702.complete
Subject Subject Range Query Range Percent Splice Strand
CG6686-RB 95..2986 17..2910 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:08 Download gff for BO17702.complete
Subject Subject Range Query Range Percent Splice Strand
CG6686-RB 91..2982 17..2908 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:10 Download gff for BO17702.complete
Subject Subject Range Query Range Percent Splice Strand
CG6686-RB 95..2986 17..2910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:10 Download gff for BO17702.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11987696..11987945 17..266 100   Minus
2L 11984508..11984662 2756..2910 98 <- Minus
2L 11984725..11984950 2530..2755 100 <- Minus
2L 11985007..11985771 1765..2529 100 <- Minus
2L 11985833..11986380 1217..1764 100 <- Minus
2L 11986438..11987387 267..1216 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:38 Download gff for BO17702.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11984508..11984662 2756..2910 98 <- Minus
arm_2L 11984725..11984950 2530..2755 100 <- Minus
arm_2L 11985007..11985771 1765..2529 100 <- Minus
arm_2L 11985833..11986380 1217..1764 100 <- Minus
arm_2L 11986438..11987387 267..1216 100 <- Minus
arm_2L 11987696..11987945 17..266 100   Minus

BO17702.pep Sequence

Translation from 16 to 2926

> BO17702.pep
MGSSSSGKKHKKDKKNRHRSRSSERPRRVTEDEDVTLDLTDDSSSRHRHH
KHKKHKEHRHKHHKQKERERANEVISLEESDSDSSDCVEVPVQAQVQAQA
KLRDARESSNRDKERDSGRDRELLRERERERDRERERDRDREKERERERE
KERLREREEREREREKERIREREKERLRERERERERERVRELTAPPPPQI
SKHAEYESRREREIERERDARKRSGRERERERNRERSRSQSPASSSRKPA
TKEREPSSRSFSPIPENGAGDVLSITETNKLRAKLGLKPLEVDSGPSKAG
PPPGSSSQGEIKKPHGEADLSSYKDEWGEFLHKPADNLKEKREAEKLREK
LKQRKEKRFLEERLARIKTLGESDEETDNVSKWVDKNKRVVNEREEAMRK
AKELEELDEAFGVSEILEQEKTKARQRAYGDSNLKGLRVDHDMDDFGEGR
TVILTLKDQDVLNEEEGDTLVNVNMVDEERYKKNVANKKQNPLSYGYNVY
EEQYDELGNPIERSVLEKYDDEMEGQPKKRKNFVIGENMDEEREHRRKLL
EIKTKLAGKRLETLEDTNLQLASDTYSAEELAKFKKPKKKVKKLRQKLKA
EDLAPLAMGEASGSSDFGSRGGRYRDHEDAEMEEFKPQIKVEVEDDDLER
VLAKARKLKQKENIIKKPLPVDFESIQREIKPEHVEDTASGVVLTGVDGN
IVLNATAEFCRTLGDIPTYGMAGNRNEDSNDMMDFDKTEQPEEHMETHTD
EPALSHGTWNSVNPDEVMQPADLDNLGEDLEDRAILDEEPDVGAGVANAL
RLALSKGYLEKEEKNRPSNTKMAHLQAKNYSIEDKAAGEDEKVGRRDRFH
FGPITDFKDKETFKPNVKLDYIDDNGRILNLKEAFRYLSHKFHGKGPGKN
KIEKRLKKMEQDGLMKTMSSTDTPLGTLTMLQQKQKETKTAYVVLSGNNK
NVPGVSGSAIAKFKASFLDH

BO17702.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-PB 964 CG6686-PB 1..964 1..964 4958 100 Plus
CG6686-PA 970 CG6686-PA 1..970 1..964 4941 99.4 Plus
CG6686-PC 109 CG6686-PC 1..84 1..84 445 100 Plus
CG2839-PA 826 CG2839-PA 377..744 8..409 343 26.6 Plus
CG2839-PA 826 CG2839-PA 313..816 8..515 329 24.1 Plus
CG2839-PA 826 CG2839-PA 263..794 70..599 311 23.5 Plus
CG2839-PA 826 CG2839-PA 289..745 4..491 308 23 Plus
CG7971-PG 1062 CG7971-PG 249..625 8..428 306 25.3 Plus
CG2839-PA 826 CG2839-PA 255..755 120..667 267 22.2 Plus