Clone BO17710 Report

Search the DGRC for BO17710

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptLap1-RA
Protein status:BO17710.pep: Imported from assembly
Sequenced Size:2581

Clone Sequence Records

BO17710.3prime Sequence

756 bp (691 high quality bases) assembled on 2006-10-13

> BO17710.3prime
ATGGTCTAGAAAGCTTGCTTTTCTCGACAACATTATGTTCATGACCGTGC
CGCAGTTTAGCAGCACTCGTTTGGCATCGCTCAGGTTGGCATTGGTCAGG
TCGTAGCCGTCGATTTCCAGCAACTTGTCGTTCAGATTAAGCAGGCGGGC
GGCATTCGTATTGGGCGTTATGGAGCTCACAAAGATGCCAACCTGATTAA
GAAGCTCGGCTATATCAAAGCCTATAGAGTTCTCCCATTTTAGAGTAACC
TGTTTGACTGTCGGATTTTTGTGGACACCAAAGATCCAGGTGGATTTCTT
ATGGCTCGCTTTGGAAGTATTGTTAGTGGCCGTGGAATTAAGCGAGTGCT
GCGACATAGTGTCATCCAGCTCCTGGTCTTCCTCCTCCGGATTTGGCTCT
AAATTATTGCTAATATTATTTTGGTAGTCCAACTGATCGACTGACTCTTC
GACGTCCTGAGCGCCAATCGCTGTCGTTTTAAAGTTACTATTGCTATTCA
AAGCATCTTGGTAGATGGTTTGTTCTTGCAGCTGTTGTTGCTGCTTTCGC
TGCCTCATGGACTCGTAAAGGTTGAGATCCTCGGGCGTTTTCTTTGTGTA
AACTCGAGCTATGTGGTATGGTGGTGGTTCCAACCGGGGTGTTGGCAGCG
CCTGTTGCTGCATTGGTTGTTGCTGCAGCGGTTGCAACTCATAGTCCTGA
TCCCCGTTTAAATGCGTGGTGGGAAGCGGCGTGTTGGCCTCGACGTAAAG
CTGCTG

BO17710.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10255-PA 2550 Lap1-RA 1810..2547 756..19 3690 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
Lap1-RB 3841 CG10255-RB 2223..2960 756..19 3690 100 Minus
Lap1-RA 4587 CG10255-RA 2206..2943 756..19 3690 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14938280..14938846 756..190 2835 100 Minus
2R 25286936 2R 14938902..14939078 195..19 885 100 Minus
Blast to na_te.dros performed 2015-02-10 15:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2496..2663 684..520 139 58.7 Minus
roo 9092 roo DM_ROO 9092bp 1108..1156 553..506 116 73.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6834..6893 545..484 115 71.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2390..2433 553..508 108 73.9 Minus
roo 9092 roo DM_ROO 9092bp 1063..1089 553..527 108 88.9 Minus

BO17710.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:51 Download gff for BO17710.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10255-PA 1810..2550 16..756 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:23:47 Download gff for BO17710.3prime
Subject Subject Range Query Range Percent Splice Strand
Lap1-RA 2206..2943 19..756 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:23 Download gff for BO17710.3prime
Subject Subject Range Query Range Percent Splice Strand
Lap1-RA 2206..2943 19..756 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:23 Download gff for BO17710.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14938280..14938843 193..756 100 -> Minus
2R 14938905..14939078 19..192 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:23:47 Download gff for BO17710.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10825785..10826348 193..756 100 -> Minus
arm_2R 10826410..10826583 19..192 100   Minus

BO17710.5prime Sequence

828 bp (648 high quality bases) assembled on 2006-10-13

> BO17710.5prime
GAAGTTATCAGTCGACATGCCGCTGCTGAGCAAATGCTTCCCCTGCTTCA
AATTCAAGCGCGAGGAGGTGATCGACAAGCTGGACTACAGTAATACCCCG
CTAACGGATTTCCCAGAAGTTTGGCAGCACGAGCGAACCCTGGAGGAGCT
TTACCTGAGCACCACAAGATTGCAAGCTCTGCCACCGCAATTGTTTTATT
GCCAAGGATTAAGGGTGCTTCACGTAAACAGCAACAATTTGGAGAGCATT
CCACAGGCCATTGGCAGTCTGCGACAGCTGCAGCATCTGGATCTCAACCG
GAATCTTATTGTCAATGTGCCCGAGGAAATCAAGTCCTGTAAGCACTTAA
CCCACTTGGACCTGAGCTGCAACAGTTTGCAACGTCTTCCCGATGCCATT
ACCTCGCTAATTTCGCTGCAGGAGCTGCTGCTAAACGAGACCTATCTAGA
ATTCCTACCAGCCAACTTTGGCCGATTGGTAAATCTGAGAATTCTGGAGC
TGCGACTCAACAATCTCATGACACTTCCCAAATCCATGGTGAGACTAATC
AACCTACAGAGGCTGGACATTGGCGGTAATGAATTTACCGAGTTGCCCGA
AGTTGTCGGCGAGTTGAAGTCCCTTCGCGAACTATGGATCGACTTCAATC
AAATACGTCGTGTTTCGGCCAACATTGGAAAGCTACGCGATCTGCAGCAC
TTCGAGGCCAATGGCAACTTGCTGGACACTCTTCCCAGCGAGCTGAGCAA
CTGGCGCAATGTGGAGGTACTATCTATATGCTCCAACAGCCCTGGAGGCC
TTTCCCTTCAGCGTGGGCATGCTGAAGT

BO17710.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10255-PA 2550 Lap1-RA 1..811 17..828 4020 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
Lap1-RB 3841 CG10255-RB 414..1224 17..828 4035 99.9 Plus
Lap1-RA 4587 CG10255-RA 397..1207 17..828 4035 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14936547..14936836 306..595 1450 100 Plus
2R 25286936 2R 14937049..14937281 595..828 1120 99.6 Plus
2R 25286936 2R 14936146..14936298 17..169 765 100 Plus
2R 25286936 2R 14936355..14936490 170..305 680 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:38:23 has no hits.

BO17710.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:52 Download gff for BO17710.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10255-PA 1..811 17..828 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:23:50 Download gff for BO17710.5prime
Subject Subject Range Query Range Percent Splice Strand
Lap1-RA 397..1207 17..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:26 Download gff for BO17710.5prime
Subject Subject Range Query Range Percent Splice Strand
Lap1-RA 397..1207 17..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:26 Download gff for BO17710.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14937050..14937281 596..828 99   Plus
2R 14936146..14936298 17..169 100 -> Plus
2R 14936355..14936490 170..305 100 -> Plus
2R 14936547..14936836 306..595 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:23:50 Download gff for BO17710.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10824052..10824341 306..595 100 -> Plus
arm_2R 10823651..10823803 17..169 100 -> Plus
arm_2R 10823860..10823995 170..305 100 -> Plus
arm_2R 10824555..10824786 596..828 99   Plus

BO17710.complete Sequence

2581 bp assembled on 2010-05-05

GenBank Submission: KX793817

> BO17710.complete
GAAGTTATCAGTCGACATGCCGCTGCTGAGCAAATGCTTCCCCTGCTTCA
AATTCAAGCGCGAGGAGGTGATCGACAAGCTGGACTACAGTAATACCCCG
CTAACGGATTTCCCAGAAGTTTGGCAGCACGAGCGAACCCTGGAGGAGCT
TTACCTGAGCACCACAAGATTGCAAGCTCTGCCACCGCAATTGTTTTATT
GCCAAGGATTAAGGGTGCTTCACGTAAACAGCAACAATTTGGAGAGCATT
CCACAGGCCATTGGCAGTCTGCGACAGCTGCAGCATCTGGATCTCAACCG
GAATCTTATTGTCAATGTGCCCGAGGAAATCAAGTCCTGTAAGCACTTAA
CCCACTTGGACCTGAGCTGCAACAGTTTGCAACGTCTTCCCGATGCCATT
ACCTCGCTAATTTCGCTGCAGGAGCTGCTGCTAAACGAGACCTATCTAGA
ATTCCTACCAGCCAACTTTGGCCGATTGGTAAATCTGAGAATTCTGGAGC
TGCGACTCAACAATCTCATGACACTTCCCAAATCCATGGTGAGACTAATC
AACCTACAGAGGCTGGACATTGGCGGTAATGAATTTACCGAGTTGCCCGA
AGTTGTCGGCGAGTTGAAGTCCCTTCGCGAACTATGGATCGACTTCAATC
AAATACGTCGTGTTTCGGCCAACATTGGAAAGCTACGCGATCTGCAGCAC
TTCGAGGCCAATGGCAACTTGCTGGACACTCTTCCCAGCGAGCTGAGCAA
CTGGCGCAATGTGGAGGTACTATCTATATGCTCCAACAGCCTGGAGGCCT
TTCCCTTCAGCGTGGGCATGCTGAAGTCCCTGGTGACATTCAAGTGCGAG
TCAAACGGTTTGACAGAGTTACCCGACAGCATAAGCTACTTGGAACAGCT
CGAGGAACTAGTATTAAGCCACAACAAGCTTATACGCCTACCTAGCACAA
TTGGGATGTTGCGTAGCCTTCGCTTTCTGTTCGCCGATGATAATCAACTA
CGACAACTACCAGATGAGCTGTGCAGCTGTCAGCAGTTGAGTGTGCTAAG
TGTGGCGAACAATCAGTTGTCCGCTCTACCACAGAACATTGGAAACCTGA
GCAAGATGAAGGTACTCAATGTGGTGAATAACTACATAAATGCATTGCCA
GTTTCGATGTTAAATCTGGTTAATCTCACATCGATGTGGCTAAGCGATAA
CCAATCGCAGCCCTTGGTGCCGCTGCAATATCTAGATGCAAGTACAAAGA
CCCAGTTGACCTGCTTCATGCTGCCCCAAGTCACATTCAAGATGAACAGT
ATACAGGCCCAACAGCAGGCTCAGGAGCAGTATGAGTTCGTTTACGCCAA
CCAGCAGCAGCCTCACGCGAGTCCCTCGAGAAGGATTTGCTTCGCCGAGG
AGGCCACCATTCTTAGCAACGCCAAAGCACAGCCAGCGCCCAATTATCCC
AGCTTTGTGGCCGCTCCGCCGACGCCAACGCCCGATCAGATGGCTGGGTC
TGTGCGGTTAATGCGTTCACCCACACCTTATCCCAAGGAGCTGCGACAAA
TGTCCAAATATGTGAGGCAGGCTCAGGCGGCGACCTCATCGGCCAATGCC
AGCGAGGTAAGGGAGGCACGCGTAGTAACCAATGGACAAATTCACTGTGA
TAGCAACAATGCCAACCAGGATGTTGTGGACCAGGCCACAACAAGTGCAA
TATACGGCATTGCGCCCGAAACGACACACATCTACGGAGTCTATCAGCAA
CCGCAGCAGATGGCGCACCCGGTGCCAACGCAGGAGTACTACGGCCTGCC
ACTGGTCAACTACGAAGCACACTATCAGCAGCTTTACGTCGAGGCCAACA
CGCCGCTTCCCACCACGCATTTAAACGGGGATCAGGACTATGAGTTGCAA
CCGCTGCAGCAACAACCAATGCAGCAACAGGCGCTGCCAACACCCCGGTT
GGAACCACCACCATACCACATAGCTCGAGTTTACACAAAGAAAACGCCCG
AGGATCTCAACCTTTACGAGTCCATGAGGCAGCGAAAGCAGCAACAACAG
CTGCAAGAACAAACCATCTACCAAGATGCTTTGAATAGCAATAGTAACTT
TAAAACGACAGCGATTGGCGCTCAGGACGTCGAAGAGTCAGTCGATCAGT
TGGACTACCAAAATAATATTAGCAATAATTTAGAGCCAAATCCGGAGGAG
GAAGACCAGGAGCTGGATGACACTATGTCGCAGCACTCGCTTAATTCCAC
GGCCACTAACAATACTTCCAAAGCGAGCCATAAGAAATCCACCTGGATCT
TTGGTGTCCACAAAAATCCGACAGTCAAACAGGTTACTCTAAAATGGGAG
AACTCTATAGGCTTTGATATAGCCGAGCTTCTTAATCAGGTTGGCATCTT
TGTGAGCTCCATAACGCCCAATACGAATGCCGCCCGCCTGCTTAATCTGA
ACGACAAGTTGCTGGAAATCGACGGCTACGACCTGACCAATGCCAACCTG
AGCGATGCCAAACGAGTGCTGCTAAACTGCGGCACGGTCATGAACATAAT
GTTGTCGAGAAAAGCAAGCTTTCTAGACCAT

BO17710.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
Lap1-RB 2550 CG10255-PB 1..2547 17..2563 12735 100 Plus
Lap1-RA 2550 CG10255-PA 1..2547 17..2563 12735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
Lap1-RB 3841 CG10255-RB 414..2960 17..2563 12735 100 Plus
Lap1-RA 4587 CG10255-RA 397..2943 17..2563 12735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14937049..14938846 595..2392 8990 100 Plus
2R 25286936 2R 14936547..14936836 306..595 1450 100 Plus
2R 25286936 2R 14938902..14939078 2387..2563 885 100 Plus
2R 25286936 2R 14936146..14936298 17..169 765 100 Plus
2R 25286936 2R 14936355..14936490 170..305 680 100 Plus
Blast to na_te.dros performed 2014-11-28 02:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2496..2663 1898..2062 139 58.7 Plus
roo 9092 roo DM_ROO 9092bp 1108..1156 2029..2076 116 73.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6834..6893 2037..2098 115 71.4 Plus

BO17710.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 18:40:20 Download gff for BO17710.complete
Subject Subject Range Query Range Percent Splice Strand
Lap1-RA 398..2940 17..2559 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:04 Download gff for BO17710.complete
Subject Subject Range Query Range Percent Splice Strand
Lap1-RA 397..2939 17..2559 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:28 Download gff for BO17710.complete
Subject Subject Range Query Range Percent Splice Strand
Lap1-RA 397..2939 17..2559 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:28 Download gff for BO17710.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14936355..14936490 170..305 100 -> Plus
2R 14936547..14936836 306..595 100 -> Plus
2R 14936146..14936298 17..169 100 -> Plus
2R 14937050..14938843 596..2389 100 -> Plus
2R 14938905..14939074 2390..2559 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:04 Download gff for BO17710.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10823651..10823803 17..169 100 -> Plus
arm_2R 10823860..10823995 170..305 100 -> Plus
arm_2R 10824052..10824341 306..595 100 -> Plus
arm_2R 10824555..10826348 596..2389 100 -> Plus
arm_2R 10826410..10826579 2390..2559 100   Plus

BO17710.pep Sequence

Translation from 16 to 2581

> BO17710.pep
MPLLSKCFPCFKFKREEVIDKLDYSNTPLTDFPEVWQHERTLEELYLSTT
RLQALPPQLFYCQGLRVLHVNSNNLESIPQAIGSLRQLQHLDLNRNLIVN
VPEEIKSCKHLTHLDLSCNSLQRLPDAITSLISLQELLLNETYLEFLPAN
FGRLVNLRILELRLNNLMTLPKSMVRLINLQRLDIGGNEFTELPEVVGEL
KSLRELWIDFNQIRRVSANIGKLRDLQHFEANGNLLDTLPSELSNWRNVE
VLSICSNSLEAFPFSVGMLKSLVTFKCESNGLTELPDSISYLEQLEELVL
SHNKLIRLPSTIGMLRSLRFLFADDNQLRQLPDELCSCQQLSVLSVANNQ
LSALPQNIGNLSKMKVLNVVNNYINALPVSMLNLVNLTSMWLSDNQSQPL
VPLQYLDASTKTQLTCFMLPQVTFKMNSIQAQQQAQEQYEFVYANQQQPH
ASPSRRICFAEEATILSNAKAQPAPNYPSFVAAPPTPTPDQMAGSVRLMR
SPTPYPKELRQMSKYVRQAQAATSSANASEVREARVVTNGQIHCDSNNAN
QDVVDQATTSAIYGIAPETTHIYGVYQQPQQMAHPVPTQEYYGLPLVNYE
AHYQQLYVEANTPLPTTHLNGDQDYELQPLQQQPMQQQALPTPRLEPPPY
HIARVYTKKTPEDLNLYESMRQRKQQQQLQEQTIYQDALNSNSNFKTTAI
GAQDVEESVDQLDYQNNISNNLEPNPEEEDQELDDTMSQHSLNSTATNNT
SKASHKKSTWIFGVHKNPTVKQVTLKWENSIGFDIAELLNQVGIFVSSIT
PNTNAARLLNLNDKLLEIDGYDLTNANLSDAKRVLLNCGTVMNIMLSRKA
SFLDH

BO17710.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
Lap1-PB 849 CG10255-PB 1..849 1..849 4381 100 Plus
Lap1-PA 849 CG10255-PA 1..849 1..849 4381 100 Plus
scrib-PC 1247 CG43398-PC 3..821 6..853 749 28.6 Plus
scrib-PI 1711 CG43398-PI 3..821 6..853 749 28.6 Plus
scrib-PB 1756 CG43398-PB 3..821 6..853 749 28.6 Plus