Clone Sequence Records
BO17711.complete Sequence
2050 bp assembled on 2010-07-15
GenBank Submission: KX797566
> BO17711.complete
GAAGTTATCAGTCGACATGGCCATGGCAGGACCCCACCGCCTGCCACGCC
CACATACACGCCGCCGCTTCCGCCTACAGGCGGAGTTTAACGTCCGGCAG
TTGGCCATCACGATAATAGCCACTGCCGCGGTTACCATGCTGATGACAGC
CACGCCCACCCTCGCCGAAATCCCCTCAAAGGGAAAACACACGCGACTGG
ACACCCAGCAGACGGCACAGGAAGATTCCGACTTTCCGCGATTCGCGGAA
CCCATTGCCAATGTCACCGTTTCCGTGGGTCGAGATGCTCTAATGGCATG
TGTGGTGGAGAACCTTAAGGGATACAAGGTGGCCTGGGTGCGGGTGGACA
CGCAGACGATCCTGTCCATTCACCACAACGTGATCTCGCAGAACAGCCGC
ATCAGCCTGACCTACAATGACCATCGATCGTGGTACTTACACATCAAGGA
GGTTGAGGAGACGGATCGCGGTTGGTACATGTGCCAAGTGAACACGGATC
CCATGCGCTCCAGGAAGGGCTATTTGCAGGTGGTGGTTCCACCGATTATT
GTCGAGGGCCTGACCAGCAACGATATGGTGGTGCGCGAGGGTCAGAACAT
CTCGCTGGTTTGCAAGGCACGTGGCTATCCGGAGCCCTACGTCATGTGGC
GACGCGAGGACGGCGAGGAGATGCTAATTGGCGGGGAGCACGTTAACGTG
GTCGACGGTGAGCTGCTGCACATCACCAAAGTGAGTCGCCTGCACATGGC
CGCGTACCTGTGCGTCGCCTCCAACGGAGTCCCACCTTCGATTAGCAAAC
GGGTCCACCTTCGTGTGCAATTTCCGCCGATGCTATCCATACCCAATCAG
CTGGAGGGAGCCTATCTGGGCCAAGATGTTATACTCGAGTGCCACACGGA
GGCCTATCCAGCATCGATTAACTATTGGACCACGGAACGCGGAGATATGA
TCATATCGGACACCTCGCGAGCCGGCGATAAATACGAGACCACATCGACC
GTCAGCGGTTACACAAAGTACATGAAGTTGAAAATCCGTGCCGTTGGACC
CAACGATTTCGGCACATATCGCTGCGTGGCCAAGAATTCGCTTGGCGAAA
CGGATGGAAATATAAAACTGGACGAAATGCCGACACCAACCACGGCCATC
ATTTCAGAAATGTCCTTGCTGAACCGCAGCTATGATGGCAAGAGACGTCA
TAGAAATAAATTTGACTCGGCTAACGCTCTGCCTGATTATGGGGTTGAGG
AGTGGCGTGACGGAGCCCAAGGCAACAATGCTGGAAACAATGGCGATAAC
AATCAAACGCCCGTGCGTAATCCGCCCGGAGCATTCCACAATTCTGCAGG
CTCACTGGCGCAGCATAATCTACTTGCTAAAATAATGCTCGGCATTAAAA
CGCAATCATTTGGGATTTTCAAACGTTTATCGAGCTCTTTGCCGCTGGCG
GCGGGACAGAGCTTTCTCTGGCTGTCGACGTTATCGCTGGTCTCAGCCCC
AAGTCGGTGGCGTATGAGTAATGTGGAAAATCGGCCGAACTCACCGGAGA
CCGTTGTCAACAACGATACCGCCGCCGAATGCTGGGAGACCAGAAGCCAT
TGCGTGAGCGAAAGCAACAACAACAACAACAGTCGCATTACCCAACGCCC
ACCGATGTGGGCGCGGCATTTGCGCATATTTCACATTGCTCATACGCCGT
GTGGCGCGTCAACGCAATACCAACGCCTATGCGAACGCCAATGGCAATGG
CAAAGGCTGTGGCAGTGGCAATGTCAGTGGAAGTGGCAACATCAATGGCA
GTGGCCAATGCTCATTTGCATAGTTATATTGGCTGGCTGTTTTGTTCGGT
GGCTGCCAATGTTGCTGCATTTTATCGGCCGGCACATCGGAACATTTTCT
ATTAGCGCGACGCATAGGCAACATTTAATGTGCACATTTTGGGACAACCG
TGGTAATAAGGTTGTCGCCAAAAATACCACCCCAGCCAGGCCAAGTACTT
TCGAAATGCTCTGCTCCCGGATGTTTTCAAGAGCAAGCTTTCTAGACCAT
BO17711.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31814-RA | 2019 | CG31814-PA | 1..2016 | 17..2032 | 10080 | 100 | Plus |
| CG31814-RB | 1932 | CG31814-PB | 1..1168 | 17..1184 | 5840 | 100 | Plus |
| CG31814-RB | 1932 | CG31814-PB | 1168..1929 | 1271..2032 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31814-RA | 3841 | CG31814-RA | 328..2344 | 16..2032 | 10085 | 100 | Plus |
| CG31814-RB | 2709 | CG31814-RB | 473..1641 | 16..1184 | 5845 | 100 | Plus |
| CG31814-RB | 2709 | CG31814-RB | 1641..2402 | 1271..2032 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13678357..13679119 | 2032..1270 | 3815 | 100 | Minus |
| 2L | 23513712 | 2L | 13690084..13690291 | 430..223 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 13713972..13714139 | 183..16 | 840 | 100 | Minus |
| 2L | 23513712 | 2L | 13684384..13684549 | 1124..959 | 830 | 100 | Minus |
| 2L | 23513712 | 2L | 13689586..13689746 | 696..536 | 790 | 99.4 | Minus |
| 2L | 23513712 | 2L | 13687521..13687658 | 959..822 | 690 | 100 | Minus |
| 2L | 23513712 | 2L | 13689356..13689485 | 821..692 | 650 | 100 | Minus |
| 2L | 23513712 | 2L | 13683122..13683210 | 1272..1184 | 445 | 100 | Minus |
| 2L | 23513712 | 2L | 13689947..13690014 | 497..430 | 340 | 100 | Minus |
| 2L | 23513712 | 2L | 13684204..13684264 | 1184..1124 | 305 | 100 | Minus |
| 2L | 23513712 | 2L | 13690490..13690532 | 224..182 | 215 | 100 | Minus |
| 2L | 23513712 | 2L | 13689845..13689885 | 536..496 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:32:37 has no hits.
BO17711.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:42:41 Download gff for
BO17711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31814-RA | 319..2334 | 17..2034 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:28 Download gff for
BO17711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31814-RA | 329..2344 | 17..2034 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:16 Download gff for
BO17711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31814-RA | 329..2344 | 17..2034 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:16 Download gff for
BO17711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13678354..13679117 | 1272..2034 | 99 | <- | Minus |
| 2L | 13683123..13683209 | 1185..1271 | 100 | <- | Minus |
| 2L | 13684204..13684263 | 1125..1184 | 100 | <- | Minus |
| 2L | 13684384..13684548 | 960..1124 | 100 | <- | Minus |
| 2L | 13687521..13687658 | 822..959 | 100 | <- | Minus |
| 2L | 13689356..13689484 | 693..821 | 100 | <- | Minus |
| 2L | 13689590..13689745 | 537..692 | 100 | <- | Minus |
| 2L | 13689845..13689884 | 497..536 | 100 | <- | Minus |
| 2L | 13689948..13690013 | 431..496 | 100 | <- | Minus |
| 2L | 13690084..13690289 | 225..430 | 100 | <- | Minus |
| 2L | 13690490..13690531 | 183..224 | 100 | <- | Minus |
| 2L | 13713973..13714138 | 17..182 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:28 Download gff for
BO17711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13690490..13690531 | 183..224 | 100 | <- | Minus |
| arm_2L | 13713973..13714138 | 17..182 | 100 | | Minus |
| arm_2L | 13678354..13679117 | 1272..2034 | 99 | <- | Minus |
| arm_2L | 13683123..13683209 | 1185..1271 | 100 | <- | Minus |
| arm_2L | 13684204..13684263 | 1125..1184 | 100 | <- | Minus |
| arm_2L | 13684384..13684548 | 960..1124 | 100 | <- | Minus |
| arm_2L | 13687521..13687658 | 822..959 | 100 | <- | Minus |
| arm_2L | 13689356..13689484 | 693..821 | 100 | <- | Minus |
| arm_2L | 13689590..13689745 | 537..692 | 100 | <- | Minus |
| arm_2L | 13689845..13689884 | 497..536 | 100 | <- | Minus |
| arm_2L | 13689948..13690013 | 431..496 | 100 | <- | Minus |
| arm_2L | 13690084..13690289 | 225..430 | 100 | <- | Minus |
BO17711.3prime Sequence
839 bp (703 high quality bases) assembled on 2006-10-13
> BO17711.3prime
ATGGTCTAGAAAGCTTGCTCTTGAAAACATCCGGGAGCAGAGCATTTCGA
AAGTACTTGGCCTGGCTGGGGTGGTATTTTTGGCGACAACCTTATTACCA
CGGTTGTCCCAAAATGTGCACATTAAATGTTGCCTATGCGTCGCGCTAAT
AGAAAATGTTCCGATGTGCCGGCCGATAAAATGCAGCAACATTGGCAGCC
ACCGAACAAAACAGCCAGCCAATATAACTATGCAAATGAGCATTGGCCAC
TGCCATTGATGTTGCCACTTCCACTGACATTGCCACTGCCACAGCCTTTG
CCATTGCCATTGGCGTTCGCATAGGCGTTGGTATTGCGTTGACGCGCCAC
ACGGCGTATGAGCAATGTGAAATATGCGCAAATGCCGCGCCCACATCGGT
GGGCGTTGGGTAATGCGACTGTTGTTGTTGTTGTTGCTTTCGCTCACGCA
ATGGCTTCTGGTCTCCCAGCATTCGGCGGCGGTATCGTTGTTGACAACGG
TCTCCGGTGAGTTCGGCCGATTTTCCACATTACTCATACGCCACCGACTT
GGGGCTGAGACCAGCGATAACGTCGACAGCCAGAGAAAGCTCTGTCCCGC
CGCCAGCGGCAAAGAGCTCGATAAACGTTTGAAAATCCCAAATGATTGCG
TTTTAATGCCGAGCATTATTTTAGCAAGTAGATTATGCTGCGCCAGTGAG
CCTGCAGAATTGTGGAATGCTCCGGGCGGATTACGCACGGGCGTTTGATT
GTTATCGCCATTGTTTCCAGCATTGTTGCCTTGGGCTCCGTCACGCCACT
CCTCACCCCATAATCAGGCAGAGCGTTAGCCGAGTCAAA
BO17711.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31814-PA | 2019 | CG31814-RA | 1195..2016 | 839..19 | 4070 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31814-RA | 3841 | CG31814-RA | 1523..2344 | 839..19 | 4085 | 99.9 | Minus |
| CG31814-RB | 2709 | CG31814-RB | 1641..2402 | 780..19 | 3810 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13678357..13679119 | 19..781 | 3815 | 100 | Plus |
| 2L | 23513712 | 2L | 13683122..13683183 | 779..839 | 260 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:33:38 has no hits.
BO17711.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:53 Download gff for
BO17711.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31814-PA | 1198..2019 | 16..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:02:33 Download gff for
BO17711.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31814-RA | 1526..2348 | 15..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:07 Download gff for
BO17711.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31814-RA | 1526..2348 | 15..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:07 Download gff for
BO17711.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13678352..13679117 | 15..779 | 99 | <- | Plus |
| 2L | 13683123..13683180 | 780..836 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:02:33 Download gff for
BO17711.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13678352..13679117 | 15..779 | 99 | <- | Plus |
| arm_2L | 13683123..13683180 | 780..836 | 98 | | Plus |
BO17711.pep Sequence
Translation from 16 to 2050
> BO17711.pep
MAMAGPHRLPRPHTRRRFRLQAEFNVRQLAITIIATAAVTMLMTATPTLA
EIPSKGKHTRLDTQQTAQEDSDFPRFAEPIANVTVSVGRDALMACVVENL
KGYKVAWVRVDTQTILSIHHNVISQNSRISLTYNDHRSWYLHIKEVEETD
RGWYMCQVNTDPMRSRKGYLQVVVPPIIVEGLTSNDMVVREGQNISLVCK
ARGYPEPYVMWRREDGEEMLIGGEHVNVVDGELLHITKVSRLHMAAYLCV
ASNGVPPSISKRVHLRVQFPPMLSIPNQLEGAYLGQDVILECHTEAYPAS
INYWTTERGDMIISDTSRAGDKYETTSTVSGYTKYMKLKIRAVGPNDFGT
YRCVAKNSLGETDGNIKLDEMPTPTTAIISEMSLLNRSYDGKRRHRNKFD
SANALPDYGVEEWRDGAQGNNAGNNGDNNQTPVRNPPGAFHNSAGSLAQH
NLLAKIMLGIKTQSFGIFKRLSSSLPLAAGQSFLWLSTLSLVSAPSRWRM
SNVENRPNSPETVVNNDTAAECWETRSHCVSESNNNNNSRITQRPPMWAR
HLRIFHIAHTPCGASTQYQRLCERQWQWQRLWQWQCQWKWQHQWQWPMLI
CIVILAGCFVRWLPMLLHFIGRHIGTFSISATHRQHLMCTFWDNRGNKVV
AKNTTPARPSTFEMLCSRMFSRASFLDH
BO17711.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:24:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31814-PA | 672 | CG31814-PA | 1..672 | 1..672 | 3616 | 100 | Plus |
| CG31814-PB | 643 | CG31814-PB | 1..643 | 1..672 | 3414 | 95.7 | Plus |
| CG14010-PB | 450 | CG14010-PB | 43..360 | 74..397 | 875 | 51.5 | Plus |
| CG14010-PD | 450 | CG14010-PD | 43..360 | 74..397 | 875 | 51.5 | Plus |
| CG31646-PA | 606 | CG31646-PA | 102..496 | 49..429 | 875 | 45.9 | Plus |
