Clone Sequence Records
BO17713.complete Sequence
2200 bp assembled on 2008-09-11
GenBank Submission: KX794443
> BO17713.complete
GAAGTTATCACTCGACATGCTAGAACCGCCGAAATTTATAGAGAATGATT
GCTACAACGGCAGCCGGACCTTCACTTGGCTGGCGGATATGGTGGGCCTC
TCCGTGGACTTGGTAAACTTTTTGATTTGCCAAATATCTGCTCTCTTCCT
GGCCTCGCTATTTCGGTCGATGCTGCATCCTTCGAAGGTTTCCAGCAAAT
TGCGCCACACATTCGCCCTATCGATTGGCCTGGCCTTCGGCTACTTTTGC
TTTGGTCAGCAGGCAATCCACATTGCCGGATTGCCGGCAATATGTTACAT
CGTTATCCGCACCCAAGATCCACGTATTGTCCAAAGAGCCGTCCTGCTGG
TAGCCATGAGTTATCTGCTGTGCGTACATTTGATGCGCCAGCTTTACGAC
TACGGATCCTACGCCCTGGACATAACCGGGCCCCTTATGATCATCACTCA
GAAGGTAACCAGCCTGGCGTTCAGCATTCACGATGGGTTTGTGCGGGGCG
ATGAGGAACTCACCAAAGCGCAACAGTACCACGCCATCCGCAAAATGCCC
TCTGCTTTGGAGTACTTCTCCTACGTGTGGCACTTCCAAAGCATCCTAGC
CGGTCCTCTCGTTTTCTACAAGGATTATATCGAGTTTGTCGAAGGCTACA
ATTTGCTTAGTACTCCACCGGGCAATGGAAATCTCGACAGCAGCAAGAGA
GAAGTAGTACTGGAACCTTCGCCTACTAAAGCGGTAATACGTAAAGTAGT
TGGTAGTCTTGTGTGCGCTTTCATCTTCATGAAGTTCGTGAAAATATATC
CCGTGAAAGACATGAAGGAGGATGACTTTATGAACAATACCAGCATGGTT
TACAAGTACTGGTACGCCATGATGGCTACCACCTGCATACGCTTTAAGTA
TTATCACGCCTGGCTCCTAGCGGATGCCATATGCAACAACTCAGGTCTAG
GTTTCACCGGCTACGATAAGGATGGCAATTCCAAGTGGGACCTGATATCT
AACATCAATGTGCTGTCGTTCGAGTTTTCAACGAACATGCGCGATGCCAT
CAACAACTGGAACTGCGGCACCAACCGCTGGCTGCGAACGCTTGTCTATG
AACGAGTGCCCCAGCAGTACGGCACGCTCCTTACCTTCGCCCTCAGCGCC
GTCTGGCACGGCTTTTATCCGGGCTACTACCTGACCTTCGCCACCGGCGC
TGTCGTTGTAACGGCTGCGCGCACCGGCCGGCGACTCTTCCGTCATCGCT
TCCAGAGCACGCAGGTCACGCGAATGTTCTACGACATCCTCACCTGCCTG
ATCACACGCGTCGTACTGGGCTACGCCACATTCCCATTCGTTCTGCTTGA
ATTTATGGGCAGCATCAAATTGTACCTGAGATTTTATTTGTGCCTTCACA
TCATTTCACTAGTGACCATATTTATTTTACCCAAGTTTATACGCGGCGAA
CGCCGGCTTCGGACGTCGAATGGCAACGGAAACGTGCGCTTGTCGGGCAG
CGGCAATACCAAGGATGCAGTGACCACTAGTGTGGAGTCTACGGCAGCCC
TAACCGCTGGCAATGATCTCAACGAGGATAAAGAGGAGGATAAACACGCT
CAATGTAAAGTCCACACGCCCACACAACAGCAGCCAGCTGCTGGCCCACA
CAAAACAACCGTAGAACAACCAACCGAGCAACCAAACAATGTAAATCTTC
GATCACGCCCACAGCAGCAGCAGCCACATCTCGAAAAGAAGGCAATGCCG
CCCACATGCGCCCGGGACGCGGTTAGTGTTCCTCATGACCAATGCGAGAT
GGATCAGTTGTCCAGCAAGCTTAAGGAGAAGATCGAGGCGGAGACCAAAA
ACATAGAGGAGTTTATTGATAAGACTGTTACCGAAACCGTGAGCGGCATT
GTAGAGTTCAAGAACGACCTGATGCGGGACATCGAGTTCCCCAAGTTAAA
GCTACCCGGCAGCAACGGGGCAATTTCTTTGGACTCTTCAAATGGCGGTG
GGCTGCGCAAGCGCAACATATCCTCTGTCCATGACAATGGCACAGATCCT
GGCCATGCTACCGCTGACCTCCATCCTCCTCTCGAGGAGAATGGCGCCGC
CTTTCTAAAGAAGGAGATCGAGGTAATCAACGCGGTGGTGCAACAAGCAG
TGCCGGCAGTGCTTAGCAACGGTCATGCAAAAGCAAGCTTTCTAGACCAT
BO17713.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:14:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oys-RE | 2169 | CG18445-PE | 1..2166 | 17..2182 | 10830 | 100 | Plus |
| oys-RB | 2169 | CG18445-PB | 1..2166 | 17..2182 | 10830 | 100 | Plus |
| oys-RA | 2169 | CG18445-PA | 1..2166 | 17..2182 | 10830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:15:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oys-RE | 4791 | CG18445-RE | 274..2439 | 17..2182 | 10830 | 100 | Plus |
| oys-RB | 3850 | CG18445-RB | 274..2439 | 17..2182 | 10830 | 100 | Plus |
| oys-RA | 3613 | CG18445-RA | 274..2439 | 17..2182 | 10830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:14:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10036947..10037772 | 2182..1357 | 4130 | 100 | Minus |
| 2R | 25286936 | 2R | 10038581..10038928 | 1024..677 | 1740 | 100 | Minus |
| 2R | 25286936 | 2R | 10038179..10038514 | 1358..1023 | 1680 | 100 | Minus |
| 2R | 25286936 | 2R | 10039626..10039850 | 336..112 | 1125 | 100 | Minus |
| 2R | 25286936 | 2R | 10039172..10039345 | 677..504 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 10039403..10039574 | 506..335 | 860 | 100 | Minus |
| 2R | 25286936 | 2R | 10048249..10048346 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:14:57 has no hits.
BO17713.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:18:01 Download gff for
BO17713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18445-RA | 266..2438 | 9..2182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:11 Download gff for
BO17713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oys-RA | 274..2435 | 17..2178 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-11 13:12:21 Download gff for
BO17713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18445-RA | 273..2434 | 17..2178 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:08 Download gff for
BO17713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oys-RA | 274..2435 | 17..2178 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:08 Download gff for
BO17713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10039626..10039849 | 113..336 | 100 | <- | Minus |
| 2R | 10048251..10048346 | 17..112 | 100 | | Minus |
| 2R | 10038581..10038928 | 677..1024 | 100 | <- | Minus |
| 2R | 10039173..10039343 | 506..676 | 100 | <- | Minus |
| 2R | 10039404..10039572 | 337..505 | 100 | <- | Minus |
| 2R | 10036951..10037771 | 1358..2178 | 100 | <- | Minus |
| 2R | 10038180..10038512 | 1025..1357 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:11 Download gff for
BO17713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5924456..5925276 | 1358..2178 | 100 | <- | Minus |
| arm_2R | 5925685..5926017 | 1025..1357 | 100 | <- | Minus |
| arm_2R | 5926086..5926433 | 677..1024 | 100 | <- | Minus |
| arm_2R | 5926678..5926848 | 506..676 | 100 | <- | Minus |
| arm_2R | 5926909..5927077 | 337..505 | 100 | <- | Minus |
| arm_2R | 5927131..5927354 | 113..336 | 100 | <- | Minus |
| arm_2R | 5935756..5935851 | 17..112 | 100 | | Minus |
BO17713.3prime Sequence
772 bp (690 high quality bases) assembled on 2006-10-13
> BO17713.3prime
ATGGTCTAGAAAGCTTGCTTTTGCATGACCGTTGCTAAGCACTGCCGGCA
CTGCTTGTTGCACCACCGCGTTGATTACCTCGATCTCCTTCTTTAGAAAG
GCGGCGCCATTCTCCTCGAGAGGAGGATGGAGGTCAGCGGTAGCATGGCC
AGGATCTGTGCCATTGTCATGGACAGAGGATATGTTGCGCTTGCGCAGCC
CACCGCCATTTGAAGAGTCCAAAGAAATTGCCCCGTTGCTGCCGGGTAGC
TTTAACTTGGGGAACTCGATGTCCCGCATCAGGTCGTTCTTGAACTCTAC
AATGCCGCTCACGGTTTCGGTAACAGTCTTATCAATAAACTCCTCTATGT
TTTTGGTCTCCGCCTCGATCTTCTCCTTAAGCTTGCTGGACAACTGATCC
ATCTCGCATTGGTCATGAGGAACACTAACCGCGTCCCGGGCGCATGTGGG
CGGCATTGCCTTCTTTTCGAGATGTGGCTGCTGCTGCTGTGGGCGTGATC
GAAGATTTACATTGTTTGGTTGCTCGGTTGGTTGTTCTACGGTTGTTTTG
TGTGGGCCAGCAGCTGGCTGCTGTTGTGTGGGCGTGTGGACTTTACATTG
AGCGTGTTTATCCTCCTCTTTATCCTCGTTGAGATCATTGCCAGCGGTTA
GGGCTGCCGTAGACTCCACACTAGTGGTCACTGCATCCTTGGTATTGCCG
CTGCCCGACAAGCGCACGTTTCCGTTGCCATTTCAACGCCCGAAGCCGGC
GTTCGCCGCGTATAAACTTGGG
BO17713.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18445-PA | 2169 | CG18445-RA | 1453..2166 | 732..19 | 3570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oys-RE | 4791 | CG18445-RE | 1687..2439 | 772..19 | 3715 | 99.6 | Minus |
| oys-RD | 3556 | CG18445-RD | 1393..2145 | 772..19 | 3715 | 99.6 | Minus |
| oys-RB | 3850 | CG18445-RB | 1687..2439 | 772..19 | 3715 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10036947..10037699 | 19..772 | 3690 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:59:26 has no hits.
BO17713.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:54 Download gff for
BO17713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18445-PA | 1414..2169 | 18..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:34:03 Download gff for
BO17713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oys-RA | 1687..2439 | 19..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:12 Download gff for
BO17713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oys-RB | 1687..2439 | 19..772 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:12 Download gff for
BO17713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10036947..10037699 | 19..772 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:34:03 Download gff for
BO17713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5924452..5925204 | 19..772 | 99 | | Plus |
BO17713.5prime Sequence
705 bp (657 high quality bases) assembled on 2006-10-13
> BO17713.5prime
GAAGTTATCACTCGACATGCTAGAACCGCCGAAATTTATAGAGAATGATT
GCTACAACGGCAGCCGGACCTTCACTTGGCTGGCGGATATGGTGGGCCTC
TCCGTGGACTTGGTAAACTTTTTGATTTGCCAAATATCTGCTCTCTTCCT
GGCCTCGCTATTTCGGTCGATGCTGCATCCTTCGAAGGTTTCCAGCAAAT
TGCGCCACACATTCGCCCTATCGATTGGCCTGGCCTTCGGCTACTTTTGC
TTTGGTCAGCAGGCAATCCACATTGCCGGATTGCCGGCAATATGTTACAT
CGTTATCCGCACCCAAGATCCACGTATTGTCCAAAGAGCCGTCCTGCTGG
TAGCCATGAGTTATCTGCTGTGCGTACATTTGATGCGCCAGCTTTACGAC
TACGGATCCTACGCCCTGGACATAACCGGGCCCCTTATGATCATCACTCA
GAAGGTAACCAGCCTGGCGTTCAGCATTCACGATGGGTTTGTGCGGGGCG
ATGAGGAACTCACCAAAGCGCAACAGTACCACGCCATCCGCAAAATGCCC
TCTGCTTTGGAGTACTTCTCCTACGTGTGGCACTTCCAAAGCATCCTAGC
CGGTCCTCTCGTTTTCTACAAGGATTATATCGAGTTTGTCGAAGGCTACA
ATTTGCTTAGTACTCCACCGGGCAATGGAAATCTCGACAGCAGCAAGAGA
GAAGT
BO17713.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18445-PA | 2169 | CG18445-RA | 1..689 | 17..705 | 3445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oys-RE | 4791 | CG18445-RE | 274..962 | 17..705 | 3445 | 100 | Plus |
| oys-RB | 3850 | CG18445-RB | 274..962 | 17..705 | 3445 | 100 | Plus |
| oys-RA | 3613 | CG18445-RA | 274..962 | 17..705 | 3445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10039626..10039850 | 336..112 | 1125 | 100 | Minus |
| 2R | 25286936 | 2R | 10039172..10039345 | 677..504 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 10039403..10039574 | 506..335 | 860 | 100 | Minus |
| 2R | 25286936 | 2R | 10048249..10048346 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:57:38 has no hits.
BO17713.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:11:55 Download gff for
BO17713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18445-PA | 1..689 | 17..705 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:10:39 Download gff for
BO17713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oys-RA | 267..962 | 9..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:30 Download gff for
BO17713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oys-RA | 267..962 | 9..705 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:30 Download gff for
BO17713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10048251..10048353 | 9..112 | 96 | | Minus |
| 2R | 10039626..10039849 | 113..336 | 100 | <- | Minus |
| 2R | 10038900..10038928 | 677..705 | 100 | <- | Minus |
| 2R | 10039173..10039343 | 506..676 | 100 | <- | Minus |
| 2R | 10039404..10039572 | 337..505 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:10:39 Download gff for
BO17713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5926405..5926433 | 677..705 | 100 | <- | Minus |
| arm_2R | 5926678..5926848 | 506..676 | 100 | <- | Minus |
| arm_2R | 5926909..5927077 | 337..505 | 100 | <- | Minus |
| arm_2R | 5927131..5927354 | 113..336 | 100 | <- | Minus |
| arm_2R | 5935756..5935858 | 9..112 | 96 | | Minus |
BO17713.pep Sequence
Translation from 16 to 2200
> BO17713.pep
MLEPPKFIENDCYNGSRTFTWLADMVGLSVDLVNFLICQISALFLASLFR
SMLHPSKVSSKLRHTFALSIGLAFGYFCFGQQAIHIAGLPAICYIVIRTQ
DPRIVQRAVLLVAMSYLLCVHLMRQLYDYGSYALDITGPLMIITQKVTSL
AFSIHDGFVRGDEELTKAQQYHAIRKMPSALEYFSYVWHFQSILAGPLVF
YKDYIEFVEGYNLLSTPPGNGNLDSSKREVVLEPSPTKAVIRKVVGSLVC
AFIFMKFVKIYPVKDMKEDDFMNNTSMVYKYWYAMMATTCIRFKYYHAWL
LADAICNNSGLGFTGYDKDGNSKWDLISNINVLSFEFSTNMRDAINNWNC
GTNRWLRTLVYERVPQQYGTLLTFALSAVWHGFYPGYYLTFATGAVVVTA
ARTGRRLFRHRFQSTQVTRMFYDILTCLITRVVLGYATFPFVLLEFMGSI
KLYLRFYLCLHIISLVTIFILPKFIRGERRLRTSNGNGNVRLSGSGNTKD
AVTTSVESTAALTAGNDLNEDKEEDKHAQCKVHTPTQQQPAAGPHKTTVE
QPTEQPNNVNLRSRPQQQQPHLEKKAMPPTCARDAVSVPHDQCEMDQLSS
KLKEKIEAETKNIEEFIDKTVTETVSGIVEFKNDLMRDIEFPKLKLPGSN
GAISLDSSNGGGLRKRNISSVHDNGTDPGHATADLHPPLEENGAAFLKKE
IEVINAVVQQAVPAVLSNGHAKASFLDH
BO17713.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oys-PE | 722 | CG18445-PE | 1..722 | 1..722 | 3786 | 100 | Plus |
| oys-PB | 722 | CG18445-PB | 1..722 | 1..722 | 3786 | 100 | Plus |
| oys-PA | 722 | CG18445-PA | 1..722 | 1..722 | 3786 | 100 | Plus |
| oys-PD | 702 | CG18445-PD | 9..702 | 29..722 | 3623 | 99.9 | Plus |
| nes-PC | 497 | CG9655-PC | 17..438 | 22..453 | 309 | 24.2 | Plus |
