Clone Sequence Records
BO17731.3prime Sequence
744 bp (663 high quality bases) assembled on 2006-10-13
> BO17731.3prime
ATGGTCTAGAAAGCTTGCCTGTGTAGATATAATATTGCGCATTTGCCGAA
TGGCTGTTACCAGTCGCGGCTCGCATCCGCTGCTGAGGGTCAGATACTGA
TCTGGAGCAGCCTTTAGCAGCGTGAGGATCTGAGACAACTGAAGGTTGAT
GGACAAGCCCAACTCTTCAAGAACGTTGGACAGGTACTCGATATCCACGC
TGAGCTGAGTAGCCGCCGAGGAAGGCAACGACTTGATTTGCAGTATTTGC
GTAACGTACAGAACACAGCACTGCTCTACGACCAGCGAGAGCAGGACGTC
GGCGCATGGAATGGCCTGCGTATACTTGATGTTGCACACCTCGAGAGCCT
GTTTCAGCAGAGAAGATGGCGACAGCAGCAGCGGCTCCAGGTGCTGCGGC
AAAGTCAGTAGATACTGACCTATTTGGGTGATGCTTTCCTGCGGGGCGAA
GCTGAACGAGGGCATTTCAATGCCCGACGCAGCGTGATCCTGCACAGGCG
GACGAATGTGCGCCAAGTGAGTTTCAATCGGTTGCAGCAATATATTAAGA
GTGATGTCATGCGTATCGGCAAAGTGACTCTTTAACGTGGCATAAATCTG
CGGAAAGATACCCAGGCTATCCGTTGCCTCCGACTTCTTTTGCTGATAAT
CAGCTATGCTATTCAATAGCTGGGTGCGAGCCGCATGGTCACAGGTCTGG
AATATGGTGATGGGGGCTCGGTTGGATGGCTTATTCAGCCTATT
BO17731.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31040-PA | 2229 | Cog7-RA | 1501..2226 | 744..19 | 3580 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog7-RA | 2340 | CG31040-RA | 1530..2255 | 744..19 | 3600 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29930636..29931361 | 19..744 | 3600 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-13 13:01:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 167..213 | 355..401 | 118 | 72.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9197..9243 | 355..401 | 118 | 72.3 | Plus |
BO17731.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:07 Download gff for
BO17731.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31040-PA | 1501..2229 | 18..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:06:37 Download gff for
BO17731.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 1530..2263 | 9..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:29:53 Download gff for
BO17731.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 1530..2263 | 9..744 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:29:53 Download gff for
BO17731.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29930628..29931361 | 9..744 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:06:37 Download gff for
BO17731.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25756350..25757083 | 9..744 | 99 | | Plus |
BO17731.5prime Sequence
746 bp (666 high quality bases) assembled on 2006-10-13
> BO17731.5prime
GAAGTTATCAGTCGACATGGATGTTTCGGCTCTTTCGGAGACAACTTTTA
GTCCTGCGGAATGGATAAACGCAAACTACAAGAAGTTTGTGGAGGAGAAT
GGTCGCGATGATAGCGAGGCTGCCTCCGCCTTCATCAGGAGTTACGTGGC
CAAGTTGCAGCTGTATATATTCAACGTAAACAATGCTGTGGAGGAGTCAA
GTCGCCAAGTGGTGGCCAGCATGCCAAGGATCGCTAAGGAATCCGCAGCG
CTGCAGGCAGATGTACACCGGCTGCAAGAGAAGATGAGTGCCATGCGATT
GGAGGTAGCTGCAGTGCAAAGCGAAACCGGCGAATGCATGGCCACCTTGG
AGCGCTTGAACACCAAAAGCCAAAAGCTCCAAGTGGCCAAGGAATCGCTA
CAGGAGTCTGATGGCTGGGGAAACCTACTAGCTGAACTAGAGGATGGATT
TGAACGCAATGATCTAAAGGGAGTCTGTGATAAGCTAATAGCCCTGCAAA
AGTCCCTGCACGCCCAGGAACAGCTGCCAGGCCACGCTGAGCGACAGACC
CAAGTGGAGGACTTCAAAAACCGCTTGGAGGCGCTTGCCTCCCCCAGCGT
GGTACAGTGCTTTGCTGAAGGCAATACGGAGCAAGCCCAGCACTTCGTTC
AGATCTTCACCAGCATTCACCGGCTGCCACAGCTGCAGCAGTATTACCGA
GCTGTGCAAAAAAATTTTTGGCAGCAGCAATGGAAGCAAACTCTGG
BO17731.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:06:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31040-PA | 2229 | Cog7-RA | 1..730 | 17..746 | 3625 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:44:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog7-RA | 2340 | CG31040-RA | 29..759 | 16..746 | 3640 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29932523..29932817 | 470..176 | 1475 | 100 | Minus |
| 3R | 32079331 | 3R | 29932190..29932468 | 746..468 | 1380 | 99.6 | Minus |
| 3R | 32079331 | 3R | 29932866..29933029 | 179..16 | 820 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 03:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 1471..1529 | 699..640 | 108 | 66.7 | Minus |
BO17731.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:08 Download gff for
BO17731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31040-PA | 1..730 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:02:49 Download gff for
BO17731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 21..759 | 7..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:58:02 Download gff for
BO17731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 21..759 | 7..746 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:58:02 Download gff for
BO17731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29932190..29932466 | 470..746 | 99 | <- | Minus |
| 3R | 29932524..29932817 | 176..469 | 100 | <- | Minus |
| 3R | 29932870..29933037 | 7..175 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:02:49 Download gff for
BO17731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25757912..25758188 | 470..746 | 99 | <- | Minus |
| arm_3R | 25758246..25758539 | 176..469 | 100 | <- | Minus |
| arm_3R | 25758592..25758759 | 7..175 | 97 | | Minus |
BO17731.complete Sequence
2260 bp assembled on 2006-12-18
GenBank Submission: FJ634194
> BO17731.complete
GAAGTTATCAGTCGACATGGATGTTTCGGCTCTTTCGGAGACAACTTTTA
GTCCTGCGGAATGGATAAACGCAAACTACAAGAAGTTTGTGGAGGAGAAT
GGTCGCGATGATAGCGAGGCTGCCTCCGCCTTCATCAGGAGTTACGTGGC
CAAGTTGCAGCTGTATATATTCAACGTAAACAATGCTGTGGAGGAGTCAA
GTCGCCAAGTGGTGGCCAGCATGCCAAGGATCGCTAAGGAATCCGCAGCG
CTGCAGGCAGATGTACACCGGCTGCAAGAGAAGATGAGTGCCATGCGATT
GGAGGTAGCTGCAGTGCAAAGCGAAACCGGCGAATGCATGGCCACCTTGG
AGCGCTTGAACACCAAAAGCCAAAAGCTCCAAGTGGCCAAGGAATCGCTA
CAGGAGTCTGATGGCTGGGGAAACCTACTAGCTGAACTAGAGGATGGATT
TGAACGCAATGATCTAAAGGGAGTCTGTGATAAGCTAATAGCCCTGCAAA
AGTCCCTGCACGCCCAGGAACAGCTGCCAGGCCACGCTGAGCGACAGACC
CAAGTGGAGGACTTCAAAAACCGCTTGGAGGCGCTTGCCTCCCCCAGCGT
GGTACAGTGCTTTGCTGAAGGCAATACGGAGCAAGCCCAGCACTTCGTTC
AGATCTTCACCAGCATTCAGCGGCTGCCACAGCTGCAGCAGTATTACCGA
GCTGTGCAAAAAAATTTTTGGCAGCAGCAATGGAAGCAAACTCTGGAGTT
GCAGGGCACGGAGTCCCAGCCTCAGCAGCAGCAGTTTCTTACCCTTTACT
ACGATCAGCTGCTCGAGCACTGCCAGCGCCAGGTCAAGTGGTGCTCCAAC
CTTTTCGGCGAGAACTCCCCGCAGCCCTTCCTGGTTATTGCCGAACTATT
GCCGGCATTGCAACCCACACGGGATGCCCATATTTTGCAGCTTTTGAAGA
CCTCCAATGAAAGATTAGAGATGCTGGCCTTGTTCGCCAAGGTTAATCAC
AGTTTTGTGCTGCACTTAAACTCCCTTCTTGAGCAATCGCACATAACCTT
GTCCGAGGAATTGCATCGCCTGCTCGGTGAGGCGATTTTCGAGTATTTCC
ACAAGTTTATCCAACAGTACCCGCGCCTGGAGGAGACCCAACTATCCACA
CAGGTGGATCGCCTTTCCTCCAACCAAGCCACTCCCAGCGATGGTGTGCG
ACATCTAGAGGAGAGTACCCGGAAGCTCTACGAGTGGCTGAAAGAGGCCT
GCGAACGTTGTGCCTCTATTACGAGTGATTTGGCTCTTTGCAAACTTATC
ACCTTGCTAAACGGCATATTCAAGCGGCAGCTGGAGAGCTTTGGGCGCAT
CCAACGTCAGATTGGACTCAGCCTGGGATCCAGCAGCTATGCGGCTCAGA
GTGAAAACTGGTCGCTGTTGCAGTACACCATGTCTCAGCTGCAATGCCTG
GCCGACTTTCAGGTTCAACTGCATCAGTTCGAACAGGACTTGCACACGCG
CATGGTCATGTTGTCCAATAGGCTGACTAAGCCATCCAACCGAGGCCCCA
TCACCATATTCCAGACCTGTGACCATGCGGCTCGCACCCAGCTATTGAAT
AGCATAGCTGATTATCAGCAAAAGAAGTCGGAGGCAACGGATAGCCTGGG
TATCTTTCCGCAGATTTATGCCACGTTAAAGAGTCACTTTGCCGATACGC
ATGACATCACTCTTAATATATTGCTGCAACCGATTGAAACTCACTTGGCG
CACATTCGTCCGCCTGTGCAGGATCACGCTGCGTCGGGCATTGAAATGCC
CTCGTTCAGCTTCGCCCCGCAGGAAAGCATCACCCAAATAGGTCAGTATC
TACTGACTTTGCCGCAGCACCTGGAGCCGCTGCTGCTGTCGCCATCTTCT
CTGCTGAAACAGGCTCTCGAGGTGTGCAACATCAAGTATACGCAGGCCAT
TCCATGCGCCGACGTCCTGCTCTCGCTGGTCGTAGAGCAGTGCTGTGTTC
TGTACGTTACGCAAATACTGCAAATCAAGTCGTTGCCTTCCTCGGCGGCT
ACTCAGCTCAGCGTGGATATCGAGTACCTGTCCAACGTTCTTGAAGAGTT
GGGCTTGTCCATCAACCTTCAGTTGTCTCAGATCCTCACGCTGCTAAAGG
CTGCTCCAGATCAGTATCTGACCCTCAGCAGCGGATGCGAGCCGCGACTG
GTAACAGCCATTCGGCAAATGCGCAATATTATATCTACACAGGCAAGCTT
TCTAGACCAT
BO17731.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:10:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog7-RA | 2229 | CG31040-PA | 1..2226 | 17..2242 | 11130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog7-RA | 2340 | CG31040-RA | 29..2255 | 16..2242 | 11135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29930636..29931727 | 2242..1151 | 5460 | 100 | Minus |
| 3R | 32079331 | 3R | 29931781..29932468 | 1155..468 | 3440 | 100 | Minus |
| 3R | 32079331 | 3R | 29932523..29932817 | 470..176 | 1475 | 100 | Minus |
| 3R | 32079331 | 3R | 29932866..29933029 | 179..16 | 820 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 167..213 | 1906..1860 | 118 | 72.3 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9197..9243 | 1906..1860 | 118 | 72.3 | Minus |
BO17731.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:34 Download gff for
BO17731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 1..2229 | 17..2243 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:02 Download gff for
BO17731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 21..2263 | 7..2252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:20 Download gff for
BO17731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 30..2255 | 17..2244 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:34 Download gff for
BO17731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 21..2263 | 7..2252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:32 Download gff for
BO17731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 30..2255 | 17..2244 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:32 Download gff for
BO17731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29930634..29931724 | 1154..2244 | 99 | <- | Minus |
| 3R | 29931783..29932466 | 470..1153 | 100 | <- | Minus |
| 3R | 29932524..29932817 | 176..469 | 100 | <- | Minus |
| 3R | 29932870..29933028 | 17..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:20 Download gff for
BO17731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25756356..25757446 | 1154..2244 | 99 | <- | Minus |
| arm_3R | 25757505..25758188 | 470..1153 | 100 | <- | Minus |
| arm_3R | 25758246..25758539 | 176..469 | 100 | <- | Minus |
| arm_3R | 25758592..25758750 | 17..175 | 100 | | Minus |
BO17731.pep Sequence
Translation from 16 to 2260
> BO17731.pep
MDVSALSETTFSPAEWINANYKKFVEENGRDDSEAASAFIRSYVAKLQLY
IFNVNNAVEESSRQVVASMPRIAKESAALQADVHRLQEKMSAMRLEVAAV
QSETGECMATLERLNTKSQKLQVAKESLQESDGWGNLLAELEDGFERNDL
KGVCDKLIALQKSLHAQEQLPGHAERQTQVEDFKNRLEALASPSVVQCFA
EGNTEQAQHFVQIFTSIQRLPQLQQYYRAVQKNFWQQQWKQTLELQGTES
QPQQQQFLTLYYDQLLEHCQRQVKWCSNLFGENSPQPFLVIAELLPALQP
TRDAHILQLLKTSNERLEMLALFAKVNHSFVLHLNSLLEQSHITLSEELH
RLLGEAIFEYFHKFIQQYPRLEETQLSTQVDRLSSNQATPSDGVRHLEES
TRKLYEWLKEACERCASITSDLALCKLITLLNGIFKRQLESFGRIQRQIG
LSLGSSSYAAQSENWSLLQYTMSQLQCLADFQVQLHQFEQDLHTRMVMLS
NRLTKPSNRGPITIFQTCDHAARTQLLNSIADYQQKKSEATDSLGIFPQI
YATLKSHFADTHDITLNILLQPIETHLAHIRPPVQDHAASGIEMPSFSFA
PQESITQIGQYLLTLPQHLEPLLLSPSSLLKQALEVCNIKYTQAIPCADV
LLSLVVEQCCVLYVTQILQIKSLPSSAATQLSVDIEYLSNVLEELGLSIN
LQLSQILTLLKAAPDQYLTLSSGCEPRLVTAIRQMRNIISTQASFLDH
BO17731.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog7-PA | 742 | CG31040-PA | 1..742 | 1..742 | 3765 | 100 | Plus |
