Clone Sequence Records
BO17732.3prime Sequence
885 bp (710 high quality bases) assembled on 2006-10-13
> BO17732.3prime
ATGGTCTAGAAAGCTTGCGGCCTCCTCGCACTCCTCCTCCTCGCGCTGAA
CAAACAACCGATGGTTGCGGGCCTCCAGGATGGACCACACAATCAGCGGA
GTGGTCCCGAGCACCATGCAGGATCCCATGCAGTAGAAGCATATCTCGTA
GTCTCCGGAAAGGTCTCGCATCAGTCCTGCCAGCGGAGGCACCGATATGG
CCCCGATGCTCTGGAACATCCTCACCAGCCCGTAGCTCGAGCTGATCCTG
TCCGTGCCAAAGACGTCCGCAAGGAGGACCGGCATAAGTACATACCAGCT
ACCCAGGCAAAGTCCGTAGACAGCGGCCGATAGACCCACCAAAACCAGAG
TCTTGGCGAAGGGAATTGTGAGCACGGCACATCCGGCGCCCAAAATGCAC
AAGGTGTAGGTCTTCTTGCGATCGAATAGCTGCAGGTCGCACAGCCAGCC
AAGTCCAAGGCGCCCAATTAAATCTAGGACCGCGCTGATGGCCACCAGGT
ATCCCGCCTCACTTTTATTGTATCCTATTGAAATAACGTGGGCGGGCAGA
TAGTACAACATGTAGGGACAGCCGACGGACATCAAGGTGACGGATAGGCA
CATCAGGATAAAGCTCGGGTCCTGCAGCAGACTGATGTCCAGGTACATCT
CGATGCGCTCGCAGCAAGTGCGTGGTCCCCGCTCTTCGTCGTCATCGTCA
TCCTCATCGGCGGCAAGGTGGCCGTCGCCATCGATAATGGACTCCACCAG
CTGGGAGTCTAGAATGCCGAGCTCCGCCTGCTCCACCGGCTGCTGCTTGA
GATCACTGAGGTTGCTAACCGGAGTGGGTATCTCCATGCTCTTGCTGAGT
CCGCGACTGACCACACTCGGCGGCGAAAGAGGCTT
BO17732.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8271-PA | 2568 | CG8271-RA | 1699..2565 | 885..19 | 4335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sln-RA | 3918 | CG8271-RA | 2453..3319 | 885..19 | 4335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:05:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11851346..11851725 | 398..19 | 1900 | 100 | Minus |
| 2R | 25286936 | 2R | 11850722..11851083 | 885..524 | 1810 | 100 | Minus |
| 2R | 25286936 | 2R | 11851156..11851285 | 527..398 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:05:45 has no hits.
BO17732.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:09 Download gff for
BO17732.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8271-PA | 1699..2568 | 18..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:31:58 Download gff for
BO17732.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sln-RA | 2453..3319 | 19..885 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:50 Download gff for
BO17732.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sln-RA | 2453..3319 | 19..885 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:50 Download gff for
BO17732.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11850722..11851082 | 525..885 | 100 | -> | Minus |
| 2R | 11851159..11851285 | 398..524 | 100 | -> | Minus |
| 2R | 11851347..11851725 | 19..397 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:31:58 Download gff for
BO17732.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7738227..7738587 | 525..885 | 100 | -> | Minus |
| arm_2R | 7738664..7738790 | 398..524 | 100 | -> | Minus |
| arm_2R | 7738852..7739230 | 19..397 | 100 | | Minus |
BO17732.5prime Sequence
862 bp (785 high quality bases) assembled on 2006-10-13
> BO17732.5prime
GAAGTTATCAGTCGACATGTCGTCCCTACAGCGTGACTGGCATTTACAGG
GTTCCCGGGGATCGGTTTACTGCGCGAGTGAACCGGACCCAACTGGTGGA
GTCCAGTACGAGTCGGGAGGGTGCCTTCTCCACACGAAGACGGCTGAGGG
CTCCGGCGGAGGGGCGGGCGTGGACGGGTCCGGTGGCGGAGTCGGCCTCG
AATGCGGCTCCCTGTTCTCGGTGGTATCAGCGCCGCCGGCTCCACTGCCC
GACATCGTTGTGCCCACCGAGATGGATGGCAAACACATGGAGTCCGCCGC
CTTCCGCTCCGGATGCTGTTCACCCAACGCCTCGCCCATGCGACGACCCG
CCACCCTCAGCCTGGACACGCAATGCTGCCCGAGGACCCTGCACGCCAGC
CTGCTGGAGCATCAGATCTCCGAGCTGGAGGAGGACGACAATGAGAACCT
GCTGACCGTGTCCAGCATCACGGCGCGACCGTTGATTGCCAAATCGCATG
AGCTTCGCAGCAGTCGGAAGTCGGGTTCAGGTTCCGGATCTGGTTTGAAT
ACGGCCCGCAGCAGGTGCGTCCGCCGGGCCAAGGAGCGCGAGCGGGATCG
CGTGACCGTCGCCAGGCGTAGCAAGCAAGTGGTCAAGGATCGGGACTCCT
CAACGACCACAACGGAGAGCGGTGGTCCGAATGTGGAGCCACCGGACGGC
GGTTACGGTTGGTTCATCGTCTTTGGGGCCTTCTCCGTGCAATTCTGGGT
GGCCGGACTGGTCAAGTCGTACGGCGTGCTGTATGTGGAGATTATGGAGA
CATTTCCCAGCTCTACGGCCACCGTGGCCTCCTGGATTCCAGCGATCCTG
TCGGCTCTATGT
BO17732.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8271-PA | 2568 | CG8271-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:02:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sln-RA | 3918 | CG8271-RA | 755..1600 | 17..862 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:02:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11848894..11849709 | 47..862 | 4080 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:02:00 has no hits.
BO17732.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:10 Download gff for
BO17732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8271-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:06:39 Download gff for
BO17732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sln-RA | 755..1600 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:30:09 Download gff for
BO17732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sln-RA | 755..1600 | 17..862 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:30:09 Download gff for
BO17732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11846078..11846110 | 17..49 | 100 | -> | Plus |
| 2R | 11848897..11849709 | 50..862 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:06:39 Download gff for
BO17732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7733583..7733615 | 17..49 | 100 | -> | Plus |
| arm_2R | 7736402..7737214 | 50..862 | 100 | | Plus |
BO17732.complete Sequence
2599 bp assembled on 2007-03-23
GenBank Submission: FJ634195
> BO17732.complete
GAAGTTATCAGTCGACATGTCGTCCCTACAGCGTGACTGGCATTTACAGG
GTTCCCGGGGATCGGTTTACTGCGCGAGTGAACCGGACCCAACTGGTGGA
GTCCAGTACGAGTCGGGAGGGTGCCTTCTCCACACGAAGACGGCTGAGGG
CTCCGGCGGAGGGGCGGGCGTGGACGGGTCCGGTGGCGGAGTCGGCCTCG
AATGCGGCTCCCTGTTCTCGGTGGTATCAGCGCCGCCGGCTCCACTGCCC
GACATCGTTGTGCCCACCGAGATGGATGGCAAACACATGGAGTCCGCCGC
CTTCCGCTCCGGATGCTGTTCACCCAACGCCTCGCCCATGCGACGACCCG
CCACCCTCAGCCTGGACACGCAATGCTGCCCGAGGACCCTGCACGCCAGC
CTGCTGGAGCATCAGATCTCCGAGCTGGAGGAGGACGACAATGAGAACCT
GCTGACCGTGTCCAGCATCACGGCGCGACCGTTGATTGCCAAATCGCATG
AGCTTCGCAGCAGTCGGAAGTCGGGTTCAGGTTCCGGATCTGGTTTGAAT
ACGGCCCGCAGCAGGTGCGTCCGCCGGGCCAAGGAGCGCGAGCGGGATCG
CGTGACCGTCGCCAGGCGTAGCAAGCAAGTGGTCAAGGATCGGGACTCCT
CAACGACCACAACGGAGAGCGGTGGTCCGAATGTGGAGCCACCGGACGGC
GGTTACGGTTGGTTCATCGTCTTTGGGGCCTTCTCCGTGCAATTCTGGGT
GGCCGGACTGGTCAAGTCGTACGGCGTGCTGTATGTGGAGATTATGGAGA
CATTTCCCAGCTCTACGGCCACCGTGGCCTCCTGGATTCCAGCGATCCTG
TCGGCTCTATGTCTGGTCCTGGCCCCGCTGTCCAGTGCTCTTTGCCAGCG
ATTCTCCTGCCGAACGGTGGTCTTCGTCGGCGGCATTTTCTGCGCCATGG
GCATGATACTGAGCTACTTTGCCACCAGTCTGCTGCACCTCCTCCTAACA
TTTGGCGTACTCACAGGTATTGGAGGTGGCCTCTCGACTACTCCGGGCAT
AGTGATAGTGTCCCAATACTTTGACAAGCACCGTGCATTGGCCAATGGAA
TCTGCGTTTCGGGCACTGCCGCCGGCAGCTTCATCCTACCCGTTCTGATA
AAGCACCTCGCGGAGAACTGTGGCTTCCACGGCACTATTCTGATCCTGGG
CGGTTGCATGCTTCACGTGTGCGTTTCGGCCACACTTTACCGCCCAATCA
GTGCTTACACGGATCAGGACTCGGGCCAGGGACAGGAGGAGACGGCAAAG
CCCCTCAACGAAGACATCAATCCGAGCACCACGGGCATTCTGACTACATC
CACCTACCTAGACACCTGCGATGTGGGTGCAGGCCACGAGCTGAGCGACA
AGTTTATCGAGCATCTGTTCCTGGAGGAGTCCAAGAACCACCTGAACTAC
TATGCCAGCAAGCAGCCAGCCCAGGACAAGTCAGCGCAGGAGAGTGACGA
CGAGGTAAAGGATATTATTGGCGAGACCACTTTCATCAAGCCCATGAAGA
AGGTGCGCAGTTCCGGATTGCTGCACTCCGTCGAAGATCTGAGCACGGAC
TCCACTTGGGTCTATCGCAAGCACTCCGGCACGGACTCCAATCGCGGAAG
TCGTCGTCGGCGCAATGTCTTTGCCAACGACGAGGTGATATCCAAGATAC
AAGCCCACTTGGAGAAGCCTCTTTCGCCGCCGAGTGTGGTCAGTCGCGGA
CTCAGCAAGAGCATGGAGATACCCACTCCGGTTAGCAACCTCAGTGATCT
CAAGCAGCAGCCGGTGGAGCAGGCGGAGCTCGGCATTCTAGACTCCCAGC
TGGTGGAGTCCATTATCGATGGCGACGGCCACCTTGCCGCCGATGAGGAT
GACGATGACGACGAAGAGCGGGGACCACGCACTTGCTGCGAGCGCATCGA
GATGTACCTGGACATCAGTCTGCTGCAGGACCCGAGCTTTATCCTGATGT
GCCTATCCGTCACCTTGATGTCCGTCGGCTGTCCCTACATGTTGTACTAT
CTGCCCGCCCACGTTATTTCAATAGGATACAATAAAAGTGAGGCGGGATA
CCTGGTGGCCATCAGCGCGGTCCTAGATTTAATTGGGCGCCTTGGACTTG
GCTGGCTGTGCGACCTGCAGCTATTCGATCGCAAGAAGACCTACACCTTG
TGCATTTTGGGCGCCGGATGTGCCGTGCTCACAATTCCCTTCGCCAAGAC
TCTGGTTTTGGTGGGTCTATCGGCCGCTGTCTACGGACTTTGCCTGGGTA
GCTGGTATGTACTTATGCCGGTCCTCCTTGCGGACGTCTTTGGCACGGAC
AGGATCAGCTCGAGCTACGGGCTGGTGAGGATGTTCCAGAGCATCGGGGC
CATATCGGTGCCTCCGCTGGCAGGACTGATGCGAGACCTTTCCGGAGACT
ACGAGATATGCTTCTACTGCATGGGATCCTGCATGGTGCTCGGGACCACT
CCGCTGATTGTGTGGTCCATCCTGGAGGCCCGCAACCATCGGTTGTTTGT
TCAGCGCGAGGAGGAGGAGTGCGAGGAGGCCGCAAGCTTTCTAGACCAT
BO17732.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:14:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sln-RA | 2568 | CG8271-PA | 1..2565 | 17..2581 | 12825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sln-RA | 3918 | CG8271-RA | 755..3319 | 17..2581 | 12825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11848894..11849865 | 47..1018 | 4860 | 100 | Plus |
| 2R | 25286936 | 2R | 11850475..11851083 | 1468..2076 | 3045 | 100 | Plus |
| 2R | 25286936 | 2R | 11849962..11850417 | 1014..1469 | 2280 | 100 | Plus |
| 2R | 25286936 | 2R | 11851346..11851725 | 2202..2581 | 1900 | 100 | Plus |
| 2R | 25286936 | 2R | 11851156..11851285 | 2073..2202 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:14:14 has no hits.
BO17732.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:09 Download gff for
BO17732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8271-RA | 1..2568 | 17..2582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:36 Download gff for
BO17732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8271-RA | 753..3317 | 17..2581 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:25 Download gff for
BO17732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sln-RA | 755..3319 | 17..2583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:09 Download gff for
BO17732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8271-RA | 753..3317 | 17..2581 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:36 Download gff for
BO17732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sln-RA | 755..3319 | 17..2583 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:36 Download gff for
BO17732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11846078..11846110 | 17..49 | 100 | -> | Plus |
| 2R | 11848897..11849863 | 50..1016 | 100 | -> | Plus |
| 2R | 11849965..11850417 | 1017..1469 | 100 | -> | Plus |
| 2R | 11850477..11851082 | 1470..2075 | 100 | -> | Plus |
| 2R | 11851159..11851285 | 2076..2202 | 100 | -> | Plus |
| 2R | 11851347..11851725 | 2203..2583 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:25 Download gff for
BO17732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7738664..7738790 | 2076..2202 | 100 | -> | Plus |
| arm_2R | 7733583..7733615 | 17..49 | 100 | -> | Plus |
| arm_2R | 7736402..7737368 | 50..1016 | 100 | -> | Plus |
| arm_2R | 7737470..7737922 | 1017..1469 | 100 | -> | Plus |
| arm_2R | 7737982..7738587 | 1470..2075 | 100 | -> | Plus |
| arm_2R | 7738852..7739230 | 2203..2583 | 99 | | Plus |
BO17732.pep Sequence
Translation from 16 to 2599
> BO17732.pep
MSSLQRDWHLQGSRGSVYCASEPDPTGGVQYESGGCLLHTKTAEGSGGGA
GVDGSGGGVGLECGSLFSVVSAPPAPLPDIVVPTEMDGKHMESAAFRSGC
CSPNASPMRRPATLSLDTQCCPRTLHASLLEHQISELEEDDNENLLTVSS
ITARPLIAKSHELRSSRKSGSGSGSGLNTARSRCVRRAKERERDRVTVAR
RSKQVVKDRDSSTTTTESGGPNVEPPDGGYGWFIVFGAFSVQFWVAGLVK
SYGVLYVEIMETFPSSTATVASWIPAILSALCLVLAPLSSALCQRFSCRT
VVFVGGIFCAMGMILSYFATSLLHLLLTFGVLTGIGGGLSTTPGIVIVSQ
YFDKHRALANGICVSGTAAGSFILPVLIKHLAENCGFHGTILILGGCMLH
VCVSATLYRPISAYTDQDSGQGQEETAKPLNEDINPSTTGILTTSTYLDT
CDVGAGHELSDKFIEHLFLEESKNHLNYYASKQPAQDKSAQESDDEVKDI
IGETTFIKPMKKVRSSGLLHSVEDLSTDSTWVYRKHSGTDSNRGSRRRRN
VFANDEVISKIQAHLEKPLSPPSVVSRGLSKSMEIPTPVSNLSDLKQQPV
EQAELGILDSQLVESIIDGDGHLAADEDDDDDEERGPRTCCERIEMYLDI
SLLQDPSFILMCLSVTLMSVGCPYMLYYLPAHVISIGYNKSEAGYLVAIS
AVLDLIGRLGLGWLCDLQLFDRKKTYTLCILGAGCAVLTIPFAKTLVLVG
LSAAVYGLCLGSWYVLMPVLLADVFGTDRISSSYGLVRMFQSIGAISVPP
LAGLMRDLSGDYEICFYCMGSCMVLGTTPLIVWSILEARNHRLFVQREEE
ECEEAASFLDH
BO17732.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sln-PA | 855 | CG8271-PA | 1..855 | 1..855 | 4445 | 100 | Plus |
| CG11665-PB | 658 | CG11665-PB | 49..656 | 225..860 | 652 | 29.7 | Plus |
| CG11665-PA | 658 | CG11665-PA | 49..656 | 225..860 | 652 | 29.7 | Plus |
| Mct1-PB | 626 | CG3456-PB | 28..617 | 225..851 | 568 | 26.2 | Plus |
| Mct1-PA | 626 | CG3456-PA | 28..617 | 225..851 | 568 | 26.2 | Plus |
