Clone Sequence Records
BO17734.3prime Sequence
629 bp (588 high quality bases) assembled on 2006-10-13
> BO17734.3prime
ATGGTCTAGAAAGCTTGCCTTCCTAAAGTTCAGCAACGTGTCGGGTATTT
CATTGATGTAGTTATAGAGAGAGGGATCTACGCCATGACCGCCAAAGTCC
GCCCATTTAGTCAGATCAATTGATGGTATAATACCGCTCTTACAGGGCAC
TCGTGGGTTGATTTCATGATCCGGCAAGACCATGGGGTAGATTTGCACAG
TATCAATCAAGTCGGTGTTGTCGCAGATCAATCGGGATAGCTTCGCCTTG
CGAATCTCCTGCAGTTGCTCGGGCGTAAATGATGAGGGCTGGTTGGGCAG
CTCGTACCAAAAGCGATCTCCACGACGCAGGTAACTCATCTGGGTGGCGA
TAACACAGGCAAAAGTCGGTCCCAACATGGAACCGGGAAGTGATTTTTCA
GAGACGCCTCCAGACCAAAGATCAATATCGGCAGGGTGTTCAAAAATGCT
GCCATAGCGCAGAACAGTCTCGTTGGGCATGGATCCGTACATCTCATCCC
AGGTGTTTGAGGTGGGCAGACCGCAGAATTTTCGGAACTCCATGTAACCG
GGAATACCAAACTCCCGACCGCGCTGCATATTAAACGACACCAGATCCAT
TCCAAACCCGGGCGCCCTCCTTCTTGAAC
BO17734.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5873-PA | 2262 | CG5873-RA | 1650..2259 | 629..19 | 3015 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:45:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5873-RA | 3081 | CG5873-RA | 2092..2701 | 629..19 | 3030 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:45:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17445569..17445847 | 439..161 | 1395 | 100 | Minus |
3R | 32079331 | 3R | 17445325..17445513 | 629..440 | 900 | 99.5 | Minus |
3R | 32079331 | 3R | 17445911..17446007 | 160..64 | 485 | 100 | Minus |
3R | 32079331 | 3R | 17446075..17446119 | 63..19 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:45:45 has no hits.
BO17734.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:11 Download gff for
BO17734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-PA | 1650..2262 | 15..629 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:14:18 Download gff for
BO17734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-RA | 2092..2704 | 15..629 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:30:18 Download gff for
BO17734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-RA | 2092..2704 | 15..629 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:30:18 Download gff for
BO17734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17445325..17445513 | 440..629 | 99 | -> | Minus |
3R | 17445569..17445847 | 161..439 | 100 | -> | Minus |
3R | 17445911..17446007 | 64..160 | 100 | -> | Minus |
3R | 17446075..17446122 | 15..63 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:14:18 Download gff for
BO17734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13271047..13271235 | 440..629 | 99 | -> | Minus |
arm_3R | 13271291..13271569 | 161..439 | 100 | -> | Minus |
arm_3R | 13271633..13271729 | 64..160 | 100 | -> | Minus |
arm_3R | 13271797..13271844 | 15..63 | 95 | | Minus |
BO17734.5prime Sequence
656 bp (653 high quality bases) assembled on 2006-10-13
> BO17734.5prime
GAAGTTATCAGTCGACATGATCTTAAGAATACTTCTACTGTCACTGGCGG
CGGTGGCGCACGCGCAGTACCATCAGTTTGGTGAGCAACTCCAGACGGCC
CACGGATCCGACTGTGCACTTCTGTTGGCCGGACCCGGTCGCTCCTCCGT
CTACGACTACAATGTGAATCTATTTCGCGGCACTTTAAACCCGTACAACA
ATGGACCGGGCACTTGCATCACCTACGATGCCATCAATGCGGCCTACTTG
GATGCACGCAAGCGTATTCATGTGGCGCAGCCAAAGTCTGACTGGAAGCC
GGAGGAACTGGCCACCGTGGGCGAGCTGCTGCTCGACATTTCCATTCAAT
TGGCCCGAACATATGGCTTATCGTATGAAGAAATCGAAAAAGGATTACCT
ACGATTGATACCTCAAAGACGCTGATTCGTGAGGTGTGTCCACCCTTCTT
CGCTGGAGTTGAGTGTCGCCCTGGAAAATATCGCCGTTTCGATGGCCTTT
GCAACAACATCGAGCACCCGACATGGGGGGCAGCTAATGCTCCGTTCCAG
CGCCTGATCGGTCCACTTTACTCGGACGGAATCAATGCTCCCAGAATTTC
GGTGACTGGTCGGGATTTGCCCTTCTCTCGAGTGGTTTCACGCACCATGC
ATCCCG
BO17734.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5873-PA | 2262 | CG5873-RA | 1..640 | 17..656 | 3200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5873-RA | 3081 | CG5873-RA | 443..1082 | 17..656 | 3200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17443744..17444039 | 361..656 | 1480 | 100 | Plus |
3R | 32079331 | 3R | 17435904..17436064 | 26..186 | 805 | 100 | Plus |
3R | 32079331 | 3R | 17441289..17441379 | 270..360 | 455 | 100 | Plus |
3R | 32079331 | 3R | 17440931..17441013 | 187..269 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:57:53 has no hits.
BO17734.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:13 Download gff for
BO17734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-PA | 1..640 | 17..656 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:49:52 Download gff for
BO17734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-RA | 435..1082 | 8..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:11 Download gff for
BO17734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-RA | 435..1082 | 8..656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:11 Download gff for
BO17734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17435906..17436064 | 28..186 | 100 | -> | Plus |
3R | 17440931..17441013 | 187..269 | 100 | -> | Plus |
3R | 17441289..17441379 | 270..360 | 100 | -> | Plus |
3R | 17443744..17444039 | 361..656 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:49:52 Download gff for
BO17734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13261628..13261786 | 28..186 | 100 | -> | Plus |
arm_3R | 13266653..13266735 | 187..269 | 100 | -> | Plus |
arm_3R | 13267011..13267101 | 270..360 | 100 | -> | Plus |
arm_3R | 13269466..13269761 | 361..656 | 100 | | Plus |
BO17734.complete Sequence
2293 bp assembled on 2007-03-23
GenBank Submission: FJ634196
> BO17734.complete
GAAGTTATCAGTCGACATGATCTTAAGAATACTTCTACTGTCACTGGCGG
CGGTGGCGCACGCGCAGTACCATCAGTTTGGTGAGCAACTCCAGACGGCC
CACGGATCCGACTGTGCACTTCTGTTGGCCGGACCCGGTCGCTCCTCCGT
CTACGACTACAATGTGAATCTATTTCGCGGCACTTTAAACCCGTACAACA
ATGGACCGGGCACTTGCATCACCTACGATGCCATCAATGCGGCCTACTTG
GATGCACGCAAGCGTATTCATGTGGCGCAGCCAAAGTCTGACTGGAAGCC
GGAGGAACTGGCCACCGTGGGCGAGCTGCTGCTCGACATTTCCATTCAAT
TGGCCCGAACATATGGCTTATCGTATGAAGAAATCGAAAAAGGATTACCT
ACGATTGATACCTCAAAGACGCTGATTCGTGAGGTGTGTCCACCCTTCTT
CGCTGGAGTTGAGTGTCGCCCTGGAAAATATCGCCGTTTCGATGGCCTTT
GCAACAACATCGAGCACCCGACATGGGGGGCAGCTAATGCTCCGTTCCAG
CGCCTGATCGGTCCACTTTACTCGGACGGAATCAATGCTCCCAGAATTTC
GGTGACTGGTCGGGATTTGCCCTTCTCTCGAGTGGTTTCACGCACCATGC
ATCCCGACGACGGTTTCCACGATCACGCGGGCACCGTTATGGTCATCGCC
TGGGGTCAGTTCATGGATCACGACTTCACGCTGACGGGAACGCCGTTGGA
TCCCATTAACCGTAACGATCCCGAGGAGTGCTGCAAGCGACCATTGCATC
TAAAGCATCCGTACTGCAATGAGATTCGCATTCCCGATGACGATTACTTC
TATCGCCTGTTTAATGTCAAGTGCATTGACTTCGTGCGTGGATTCCCCTC
TCCTCGTCCAGGCTGCAAATTAGGCTCCCGTCAGCAGTTCAACACCTTGA
CTGGTGTCATCGATGCGAACACCGTTTACGGAGTGAAGGAGTCGTTTGCC
CGCAAGCTAAGAACTGGCTACGGAGGTCTGATGCGCATGAATCCCGTGTT
CCAGGAGTACGGCCTGAAGGACCTGCTTCCCCTGAAGCTGGATATCCCCG
ACGAGGGATGCACGCGTCCCAACAAGAGCATGTACTGTTTCGAGGGCGGT
GAGATTCGCGTGAATGAGCAGCTGGTGCTCACGTGCATGCACACCTTGAT
GGCGCGAGAGCACAATCGACTGGCGACTGCATTGGCGCAGATTAACAAAC
ACTGGGATGATGAGACGCTGTTCCAGGAGGCCAGACGCATCAATATCGCC
ATAGTTCAGCATGTCACCTTCAACGAATTTCTGCCCATTCTGCTGGGCAA
GGAAGTGATGGAGAAGTTCGGTTTGGTGCTCCAGAAAGATGGCTACTGGG
ATGGTTATGATTCAACAGTGAATCCGGGCATTATTGACTCTTTTGCTGGA
GCTGCCTTCCGATTTGGCCACTCTCTGTTGCCAACTGCCGTGGAACGCTG
GTCCAAGGCCCACAAGTTTATTGCCTCGAAACGTCTGTCGGATTTGATCA
GGAGACCCTATGATCTGTACCGTGCAGGAGTGCTGGATGAATATTTCATG
GGTCTGATGAACCAAGTGGCCCAGGCAATGGACGACTCGATAACCCAGGA
GGTCACCAATCATCTGTTCAAGAAGGAGGGCGCCCGGTTTGGAATGGATC
TGGTGTCGTTTAATATGCAGCGCGGTCGGGAGTTTGGTATTCCCGGTTAC
ATGGAGTTCCGAAAATTCTGCGGTCTGCCCACCTCAAACACCTGGGATGA
GATGTACGGATCCATGCCCAACGAGACTGTTCTGCGCTATGGCAGCATTT
TTGAACACCCTGCCGATATTGATCTTTGGTCTGGAGGCGTCTCTGAAAAA
TCACTTCCCGGTTCCATGTTGGGACCGACTTTTGCCTGTGTTATCGCCAC
CCAGATGAGTTACCTGCGTCGTGGAGATCGCTTTTGGTACGAGCTGCCCA
ACCAGCCCTCATCATTTACGCCCGAGCAACTGCAGGAGATTCGCAAGGCG
AAGCTATCCCGATTGATCTGCGACAACACCGACTTGATTGATACTGTGCA
AATCTACCCCATGGTCTTGCCGGATCATGAAATCAACCCACGAGTGCCCT
GTAAGAGCGGTATTATACCATCAATTGATCTGACTAAATGGGCGGACTTT
GGCGGTCATGGCGTAGATCCCTCTCTCTATAACTACATCAATGAAATACC
CGACACGTTGCTGAACTTTAGGAAGGCAAGCTTTCTAGACCAT
BO17734.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5873-RA | 2262 | CG5873-PA | 1..2259 | 17..2275 | 11295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5873-RA | 3081 | CG5873-RA | 443..2701 | 17..2275 | 11295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:07:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17444581..17445513 | 922..1854 | 4665 | 100 | Plus |
3R | 32079331 | 3R | 17443744..17444132 | 361..749 | 1945 | 100 | Plus |
3R | 32079331 | 3R | 17445569..17445847 | 1855..2133 | 1395 | 100 | Plus |
3R | 32079331 | 3R | 17444309..17444484 | 749..924 | 880 | 100 | Plus |
3R | 32079331 | 3R | 17435904..17436064 | 26..186 | 805 | 100 | Plus |
3R | 32079331 | 3R | 17445911..17446007 | 2134..2230 | 485 | 100 | Plus |
3R | 32079331 | 3R | 17441289..17441379 | 270..360 | 455 | 100 | Plus |
3R | 32079331 | 3R | 17440931..17441013 | 187..269 | 415 | 100 | Plus |
3R | 32079331 | 3R | 17446075..17446119 | 2231..2275 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:07:08 has no hits.
BO17734.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:10 Download gff for
BO17734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-RA | 1..2262 | 17..2279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:13 Download gff for
BO17734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-RA | 439..2697 | 17..2277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:06 Download gff for
BO17734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-RA | 443..2701 | 17..2277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:10 Download gff for
BO17734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-RA | 431..2700 | 8..2279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:19 Download gff for
BO17734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5873-RA | 443..2701 | 17..2277 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:19 Download gff for
BO17734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17446075..17446119 | 2231..2277 | 95 | | Plus |
3R | 17445569..17445847 | 1855..2133 | 100 | -> | Plus |
3R | 17445911..17446007 | 2134..2230 | 100 | -> | Plus |
3R | 17435896..17436064 | 20..186 | 98 | -> | Plus |
3R | 17440931..17441013 | 187..269 | 100 | -> | Plus |
3R | 17441289..17441379 | 270..360 | 100 | -> | Plus |
3R | 17443744..17444132 | 361..749 | 100 | -> | Plus |
3R | 17444310..17444483 | 750..923 | 100 | -> | Plus |
3R | 17444583..17445513 | 924..1854 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:06 Download gff for
BO17734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13261618..13261786 | 20..186 | 98 | -> | Plus |
arm_3R | 13266653..13266735 | 187..269 | 100 | -> | Plus |
arm_3R | 13267011..13267101 | 270..360 | 100 | -> | Plus |
arm_3R | 13269466..13269854 | 361..749 | 100 | -> | Plus |
arm_3R | 13270032..13270205 | 750..923 | 100 | -> | Plus |
arm_3R | 13270305..13271235 | 924..1854 | 100 | -> | Plus |
arm_3R | 13271291..13271569 | 1855..2133 | 100 | -> | Plus |
arm_3R | 13271633..13271729 | 2134..2230 | 100 | -> | Plus |
arm_3R | 13271797..13271841 | 2231..2277 | 95 | | Plus |
BO17734.pep Sequence
Translation from 16 to 2293
> BO17734.pep
MILRILLLSLAAVAHAQYHQFGEQLQTAHGSDCALLLAGPGRSSVYDYNV
NLFRGTLNPYNNGPGTCITYDAINAAYLDARKRIHVAQPKSDWKPEELAT
VGELLLDISIQLARTYGLSYEEIEKGLPTIDTSKTLIREVCPPFFAGVEC
RPGKYRRFDGLCNNIEHPTWGAANAPFQRLIGPLYSDGINAPRISVTGRD
LPFSRVVSRTMHPDDGFHDHAGTVMVIAWGQFMDHDFTLTGTPLDPINRN
DPEECCKRPLHLKHPYCNEIRIPDDDYFYRLFNVKCIDFVRGFPSPRPGC
KLGSRQQFNTLTGVIDANTVYGVKESFARKLRTGYGGLMRMNPVFQEYGL
KDLLPLKLDIPDEGCTRPNKSMYCFEGGEIRVNEQLVLTCMHTLMAREHN
RLATALAQINKHWDDETLFQEARRINIAIVQHVTFNEFLPILLGKEVMEK
FGLVLQKDGYWDGYDSTVNPGIIDSFAGAAFRFGHSLLPTAVERWSKAHK
FIASKRLSDLIRRPYDLYRAGVLDEYFMGLMNQVAQAMDDSITQEVTNHL
FKKEGARFGMDLVSFNMQRGREFGIPGYMEFRKFCGLPTSNTWDEMYGSM
PNETVLRYGSIFEHPADIDLWSGGVSEKSLPGSMLGPTFACVIATQMSYL
RRGDRFWYELPNQPSSFTPEQLQEIRKAKLSRLICDNTDLIDTVQIYPMV
LPDHEINPRVPCKSGIIPSIDLTKWADFGGHGVDPSLYNYINEIPDTLLN
FRKASFLDH
BO17734.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5873-PA | 753 | CG5873-PA | 1..753 | 1..753 | 4055 | 100 | Plus |
CG42331-PD | 1615 | CG42331-PD | 117..735 | 89..727 | 1024 | 37 | Plus |
CG42331-PB | 1615 | CG13632-PA | 117..735 | 89..727 | 1024 | 37 | Plus |
cd-PA | 830 | CG6969-PA | 217..776 | 154..713 | 1014 | 40.4 | Plus |
CG42331-PC | 1439 | CG6879-PA | 6..559 | 154..727 | 1010 | 39.2 | Plus |