Clone BO17734 Report

Search the DGRC for BO17734

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG5873-RA
Protein status:BO17734.pep: validated full length
Sequenced Size:2293

Clone Sequence Records

BO17734.3prime Sequence

629 bp (588 high quality bases) assembled on 2006-10-13

> BO17734.3prime
ATGGTCTAGAAAGCTTGCCTTCCTAAAGTTCAGCAACGTGTCGGGTATTT
CATTGATGTAGTTATAGAGAGAGGGATCTACGCCATGACCGCCAAAGTCC
GCCCATTTAGTCAGATCAATTGATGGTATAATACCGCTCTTACAGGGCAC
TCGTGGGTTGATTTCATGATCCGGCAAGACCATGGGGTAGATTTGCACAG
TATCAATCAAGTCGGTGTTGTCGCAGATCAATCGGGATAGCTTCGCCTTG
CGAATCTCCTGCAGTTGCTCGGGCGTAAATGATGAGGGCTGGTTGGGCAG
CTCGTACCAAAAGCGATCTCCACGACGCAGGTAACTCATCTGGGTGGCGA
TAACACAGGCAAAAGTCGGTCCCAACATGGAACCGGGAAGTGATTTTTCA
GAGACGCCTCCAGACCAAAGATCAATATCGGCAGGGTGTTCAAAAATGCT
GCCATAGCGCAGAACAGTCTCGTTGGGCATGGATCCGTACATCTCATCCC
AGGTGTTTGAGGTGGGCAGACCGCAGAATTTTCGGAACTCCATGTAACCG
GGAATACCAAACTCCCGACCGCGCTGCATATTAAACGACACCAGATCCAT
TCCAAACCCGGGCGCCCTCCTTCTTGAAC

BO17734.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5873-PA 2262 CG5873-RA 1650..2259 629..19 3015 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5873-RA 3081 CG5873-RA 2092..2701 629..19 3030 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17445569..17445847 439..161 1395 100 Minus
3R 32079331 3R 17445325..17445513 629..440 900 99.5 Minus
3R 32079331 3R 17445911..17446007 160..64 485 100 Minus
3R 32079331 3R 17446075..17446119 63..19 225 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:45:45 has no hits.

BO17734.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:11 Download gff for BO17734.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5873-PA 1650..2262 15..629 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:14:18 Download gff for BO17734.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5873-RA 2092..2704 15..629 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:30:18 Download gff for BO17734.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5873-RA 2092..2704 15..629 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:30:18 Download gff for BO17734.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17445325..17445513 440..629 99 -> Minus
3R 17445569..17445847 161..439 100 -> Minus
3R 17445911..17446007 64..160 100 -> Minus
3R 17446075..17446122 15..63 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:14:18 Download gff for BO17734.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13271047..13271235 440..629 99 -> Minus
arm_3R 13271291..13271569 161..439 100 -> Minus
arm_3R 13271633..13271729 64..160 100 -> Minus
arm_3R 13271797..13271844 15..63 95   Minus

BO17734.5prime Sequence

656 bp (653 high quality bases) assembled on 2006-10-13

> BO17734.5prime
GAAGTTATCAGTCGACATGATCTTAAGAATACTTCTACTGTCACTGGCGG
CGGTGGCGCACGCGCAGTACCATCAGTTTGGTGAGCAACTCCAGACGGCC
CACGGATCCGACTGTGCACTTCTGTTGGCCGGACCCGGTCGCTCCTCCGT
CTACGACTACAATGTGAATCTATTTCGCGGCACTTTAAACCCGTACAACA
ATGGACCGGGCACTTGCATCACCTACGATGCCATCAATGCGGCCTACTTG
GATGCACGCAAGCGTATTCATGTGGCGCAGCCAAAGTCTGACTGGAAGCC
GGAGGAACTGGCCACCGTGGGCGAGCTGCTGCTCGACATTTCCATTCAAT
TGGCCCGAACATATGGCTTATCGTATGAAGAAATCGAAAAAGGATTACCT
ACGATTGATACCTCAAAGACGCTGATTCGTGAGGTGTGTCCACCCTTCTT
CGCTGGAGTTGAGTGTCGCCCTGGAAAATATCGCCGTTTCGATGGCCTTT
GCAACAACATCGAGCACCCGACATGGGGGGCAGCTAATGCTCCGTTCCAG
CGCCTGATCGGTCCACTTTACTCGGACGGAATCAATGCTCCCAGAATTTC
GGTGACTGGTCGGGATTTGCCCTTCTCTCGAGTGGTTTCACGCACCATGC
ATCCCG

BO17734.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5873-PA 2262 CG5873-RA 1..640 17..656 3200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5873-RA 3081 CG5873-RA 443..1082 17..656 3200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17443744..17444039 361..656 1480 100 Plus
3R 32079331 3R 17435904..17436064 26..186 805 100 Plus
3R 32079331 3R 17441289..17441379 270..360 455 100 Plus
3R 32079331 3R 17440931..17441013 187..269 415 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:57:53 has no hits.

BO17734.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:13 Download gff for BO17734.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5873-PA 1..640 17..656 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:49:52 Download gff for BO17734.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5873-RA 435..1082 8..656 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:11 Download gff for BO17734.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5873-RA 435..1082 8..656 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:11 Download gff for BO17734.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17435906..17436064 28..186 100 -> Plus
3R 17440931..17441013 187..269 100 -> Plus
3R 17441289..17441379 270..360 100 -> Plus
3R 17443744..17444039 361..656 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:49:52 Download gff for BO17734.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13261628..13261786 28..186 100 -> Plus
arm_3R 13266653..13266735 187..269 100 -> Plus
arm_3R 13267011..13267101 270..360 100 -> Plus
arm_3R 13269466..13269761 361..656 100   Plus

BO17734.complete Sequence

2293 bp assembled on 2007-03-23

GenBank Submission: FJ634196

> BO17734.complete
GAAGTTATCAGTCGACATGATCTTAAGAATACTTCTACTGTCACTGGCGG
CGGTGGCGCACGCGCAGTACCATCAGTTTGGTGAGCAACTCCAGACGGCC
CACGGATCCGACTGTGCACTTCTGTTGGCCGGACCCGGTCGCTCCTCCGT
CTACGACTACAATGTGAATCTATTTCGCGGCACTTTAAACCCGTACAACA
ATGGACCGGGCACTTGCATCACCTACGATGCCATCAATGCGGCCTACTTG
GATGCACGCAAGCGTATTCATGTGGCGCAGCCAAAGTCTGACTGGAAGCC
GGAGGAACTGGCCACCGTGGGCGAGCTGCTGCTCGACATTTCCATTCAAT
TGGCCCGAACATATGGCTTATCGTATGAAGAAATCGAAAAAGGATTACCT
ACGATTGATACCTCAAAGACGCTGATTCGTGAGGTGTGTCCACCCTTCTT
CGCTGGAGTTGAGTGTCGCCCTGGAAAATATCGCCGTTTCGATGGCCTTT
GCAACAACATCGAGCACCCGACATGGGGGGCAGCTAATGCTCCGTTCCAG
CGCCTGATCGGTCCACTTTACTCGGACGGAATCAATGCTCCCAGAATTTC
GGTGACTGGTCGGGATTTGCCCTTCTCTCGAGTGGTTTCACGCACCATGC
ATCCCGACGACGGTTTCCACGATCACGCGGGCACCGTTATGGTCATCGCC
TGGGGTCAGTTCATGGATCACGACTTCACGCTGACGGGAACGCCGTTGGA
TCCCATTAACCGTAACGATCCCGAGGAGTGCTGCAAGCGACCATTGCATC
TAAAGCATCCGTACTGCAATGAGATTCGCATTCCCGATGACGATTACTTC
TATCGCCTGTTTAATGTCAAGTGCATTGACTTCGTGCGTGGATTCCCCTC
TCCTCGTCCAGGCTGCAAATTAGGCTCCCGTCAGCAGTTCAACACCTTGA
CTGGTGTCATCGATGCGAACACCGTTTACGGAGTGAAGGAGTCGTTTGCC
CGCAAGCTAAGAACTGGCTACGGAGGTCTGATGCGCATGAATCCCGTGTT
CCAGGAGTACGGCCTGAAGGACCTGCTTCCCCTGAAGCTGGATATCCCCG
ACGAGGGATGCACGCGTCCCAACAAGAGCATGTACTGTTTCGAGGGCGGT
GAGATTCGCGTGAATGAGCAGCTGGTGCTCACGTGCATGCACACCTTGAT
GGCGCGAGAGCACAATCGACTGGCGACTGCATTGGCGCAGATTAACAAAC
ACTGGGATGATGAGACGCTGTTCCAGGAGGCCAGACGCATCAATATCGCC
ATAGTTCAGCATGTCACCTTCAACGAATTTCTGCCCATTCTGCTGGGCAA
GGAAGTGATGGAGAAGTTCGGTTTGGTGCTCCAGAAAGATGGCTACTGGG
ATGGTTATGATTCAACAGTGAATCCGGGCATTATTGACTCTTTTGCTGGA
GCTGCCTTCCGATTTGGCCACTCTCTGTTGCCAACTGCCGTGGAACGCTG
GTCCAAGGCCCACAAGTTTATTGCCTCGAAACGTCTGTCGGATTTGATCA
GGAGACCCTATGATCTGTACCGTGCAGGAGTGCTGGATGAATATTTCATG
GGTCTGATGAACCAAGTGGCCCAGGCAATGGACGACTCGATAACCCAGGA
GGTCACCAATCATCTGTTCAAGAAGGAGGGCGCCCGGTTTGGAATGGATC
TGGTGTCGTTTAATATGCAGCGCGGTCGGGAGTTTGGTATTCCCGGTTAC
ATGGAGTTCCGAAAATTCTGCGGTCTGCCCACCTCAAACACCTGGGATGA
GATGTACGGATCCATGCCCAACGAGACTGTTCTGCGCTATGGCAGCATTT
TTGAACACCCTGCCGATATTGATCTTTGGTCTGGAGGCGTCTCTGAAAAA
TCACTTCCCGGTTCCATGTTGGGACCGACTTTTGCCTGTGTTATCGCCAC
CCAGATGAGTTACCTGCGTCGTGGAGATCGCTTTTGGTACGAGCTGCCCA
ACCAGCCCTCATCATTTACGCCCGAGCAACTGCAGGAGATTCGCAAGGCG
AAGCTATCCCGATTGATCTGCGACAACACCGACTTGATTGATACTGTGCA
AATCTACCCCATGGTCTTGCCGGATCATGAAATCAACCCACGAGTGCCCT
GTAAGAGCGGTATTATACCATCAATTGATCTGACTAAATGGGCGGACTTT
GGCGGTCATGGCGTAGATCCCTCTCTCTATAACTACATCAATGAAATACC
CGACACGTTGCTGAACTTTAGGAAGGCAAGCTTTCTAGACCAT

BO17734.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5873-RA 2262 CG5873-PA 1..2259 17..2275 11295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5873-RA 3081 CG5873-RA 443..2701 17..2275 11295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17444581..17445513 922..1854 4665 100 Plus
3R 32079331 3R 17443744..17444132 361..749 1945 100 Plus
3R 32079331 3R 17445569..17445847 1855..2133 1395 100 Plus
3R 32079331 3R 17444309..17444484 749..924 880 100 Plus
3R 32079331 3R 17435904..17436064 26..186 805 100 Plus
3R 32079331 3R 17445911..17446007 2134..2230 485 100 Plus
3R 32079331 3R 17441289..17441379 270..360 455 100 Plus
3R 32079331 3R 17440931..17441013 187..269 415 100 Plus
3R 32079331 3R 17446075..17446119 2231..2275 225 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:07:08 has no hits.

BO17734.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:10 Download gff for BO17734.complete
Subject Subject Range Query Range Percent Splice Strand
CG5873-RA 1..2262 17..2279 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:13 Download gff for BO17734.complete
Subject Subject Range Query Range Percent Splice Strand
CG5873-RA 439..2697 17..2277 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:06 Download gff for BO17734.complete
Subject Subject Range Query Range Percent Splice Strand
CG5873-RA 443..2701 17..2277 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:10 Download gff for BO17734.complete
Subject Subject Range Query Range Percent Splice Strand
CG5873-RA 431..2700 8..2279 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:19 Download gff for BO17734.complete
Subject Subject Range Query Range Percent Splice Strand
CG5873-RA 443..2701 17..2277 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:19 Download gff for BO17734.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17446075..17446119 2231..2277 95   Plus
3R 17445569..17445847 1855..2133 100 -> Plus
3R 17445911..17446007 2134..2230 100 -> Plus
3R 17435896..17436064 20..186 98 -> Plus
3R 17440931..17441013 187..269 100 -> Plus
3R 17441289..17441379 270..360 100 -> Plus
3R 17443744..17444132 361..749 100 -> Plus
3R 17444310..17444483 750..923 100 -> Plus
3R 17444583..17445513 924..1854 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:06 Download gff for BO17734.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13261618..13261786 20..186 98 -> Plus
arm_3R 13266653..13266735 187..269 100 -> Plus
arm_3R 13267011..13267101 270..360 100 -> Plus
arm_3R 13269466..13269854 361..749 100 -> Plus
arm_3R 13270032..13270205 750..923 100 -> Plus
arm_3R 13270305..13271235 924..1854 100 -> Plus
arm_3R 13271291..13271569 1855..2133 100 -> Plus
arm_3R 13271633..13271729 2134..2230 100 -> Plus
arm_3R 13271797..13271841 2231..2277 95   Plus

BO17734.pep Sequence

Translation from 16 to 2293

> BO17734.pep
MILRILLLSLAAVAHAQYHQFGEQLQTAHGSDCALLLAGPGRSSVYDYNV
NLFRGTLNPYNNGPGTCITYDAINAAYLDARKRIHVAQPKSDWKPEELAT
VGELLLDISIQLARTYGLSYEEIEKGLPTIDTSKTLIREVCPPFFAGVEC
RPGKYRRFDGLCNNIEHPTWGAANAPFQRLIGPLYSDGINAPRISVTGRD
LPFSRVVSRTMHPDDGFHDHAGTVMVIAWGQFMDHDFTLTGTPLDPINRN
DPEECCKRPLHLKHPYCNEIRIPDDDYFYRLFNVKCIDFVRGFPSPRPGC
KLGSRQQFNTLTGVIDANTVYGVKESFARKLRTGYGGLMRMNPVFQEYGL
KDLLPLKLDIPDEGCTRPNKSMYCFEGGEIRVNEQLVLTCMHTLMAREHN
RLATALAQINKHWDDETLFQEARRINIAIVQHVTFNEFLPILLGKEVMEK
FGLVLQKDGYWDGYDSTVNPGIIDSFAGAAFRFGHSLLPTAVERWSKAHK
FIASKRLSDLIRRPYDLYRAGVLDEYFMGLMNQVAQAMDDSITQEVTNHL
FKKEGARFGMDLVSFNMQRGREFGIPGYMEFRKFCGLPTSNTWDEMYGSM
PNETVLRYGSIFEHPADIDLWSGGVSEKSLPGSMLGPTFACVIATQMSYL
RRGDRFWYELPNQPSSFTPEQLQEIRKAKLSRLICDNTDLIDTVQIYPMV
LPDHEINPRVPCKSGIIPSIDLTKWADFGGHGVDPSLYNYINEIPDTLLN
FRKASFLDH

BO17734.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5873-PA 753 CG5873-PA 1..753 1..753 4055 100 Plus
CG42331-PD 1615 CG42331-PD 117..735 89..727 1024 37 Plus
CG42331-PB 1615 CG13632-PA 117..735 89..727 1024 37 Plus
cd-PA 830 CG6969-PA 217..776 154..713 1014 40.4 Plus
CG42331-PC 1439 CG6879-PA 6..559 154..727 1010 39.2 Plus