Clone Sequence Records
BO17738.3prime Sequence
645 bp (618 high quality bases) assembled on 2006-10-13
> BO17738.3prime
ATGGTCTAGAAAGCTTGCCATGGCTGATGAGATCTGCTGCCCCTGTTGAT
AGAGTTGATCTTGCTGCTGCGGCTGTTGCTGCTGCTGCTGTTGTTGCTGC
TGCGGTTGGTACTGCTGCTGCTGCTGCTGCGGCTGTTGGTACTGCGGCTG
TTGCTGCTGCCCCATCTGCTGCTGCGGCGCCAGTTGCAATGGCGGCGGTG
TGTTGCCAATTGCTGCCGCAGCTGCTCGGGCATTTTGCTGCGTTGTGGCC
TCGTTGGTCTTCAGGAAATATGTTATTAAATCGATGGGCAGCGGGAACAC
AATCGTCGAGTTCTTCTCCGCAGATATGGTGTTGAGTGTCTGAAGGTAGC
GCAGTTGGAGGGCAGCCGGCGAATCGCCAATCACCTCGGACGCCTCGCGA
AGAGCCCTCGACGCCTTCTGTTCTCCTTCGGCGGCGATGACTTTGGCGCG
GGCTTCCCGGGCGGCTTCTGCCTCCGCGGCCATGGCACGTTGCAGTTGCA
CCGGCAGACGCACGTCCTTGATTTCCACACGTTCAACTTTGATGCCCCAG
GCATCGGTGGCTTCGTCGAGTTGAACCTGCATTGTGCCGGAAATCGTCAT
ACGCTCGCTGAGTAATCTCATGCAAATGCCGAGTTCCCATTGTGT
BO17738.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32245-PB | 1518 | CG32245-RB | 890..1515 | 645..19 | 3095 | 99.8 | Minus |
CG32245-PC | 1197 | CG32245-RC | 569..1194 | 645..19 | 3095 | 99.8 | Minus |
CG32245-PA | 1194 | CG32245-RA | 566..1191 | 645..19 | 3095 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42540-RG | 3802 | CG42540-RG | 1234..1859 | 645..19 | 3110 | 99.8 | Minus |
CG42540-RJ | 4175 | CG42540-RJ | 1607..2232 | 645..19 | 3110 | 99.8 | Minus |
CG42540-RI | 3899 | CG42540-RI | 1331..1956 | 645..19 | 3110 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4590026..4590352 | 345..19 | 1635 | 100 | Minus |
3L | 28110227 | 3L | 4589787..4589967 | 520..340 | 905 | 100 | Minus |
3L | 28110227 | 3L | 4586716..4586785 | 645..575 | 305 | 98.6 | Minus |
3L | 28110227 | 3L | 4588066..4588124 | 579..521 | 295 | 100 | Minus |
X | 23542271 | X | 19186315..19186413 | 483..385 | 210 | 80.8 | Minus |
Blast to na_te.dros performed 2015-02-11 18:25:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Tel | 2485 | Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). | 1502..1565 | 271..334 | 121 | 69.2 | Plus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 514..661 | 392..544 | 114 | 54.9 | Plus |
BO17738.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:16 Download gff for
BO17738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32245-PA | 566..1194 | 15..645 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:40:50 Download gff for
BO17738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42540-RI | 1331..1959 | 15..645 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:53:17 Download gff for
BO17738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42540-RI | 1331..1959 | 15..645 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:53:17 Download gff for
BO17738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4586716..4586783 | 577..645 | 98 | -> | Minus |
3L | 4588069..4588124 | 521..576 | 100 | -> | Minus |
3L | 4589787..4589967 | 340..520 | 100 | -> | Minus |
3L | 4590032..4590355 | 15..339 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:40:50 Download gff for
BO17738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4586716..4586783 | 577..645 | 98 | -> | Minus |
arm_3L | 4588069..4588124 | 521..576 | 100 | -> | Minus |
arm_3L | 4589787..4589967 | 340..520 | 100 | -> | Minus |
arm_3L | 4590032..4590355 | 15..339 | 99 | | Minus |
BO17738.5prime Sequence
581 bp (580 high quality bases) assembled on 2006-10-13
> BO17738.5prime
GAAGTTATCAGTCGACATGGCGGCAATGAGTGCGGATATTGTGCCCATGG
AACAAGTGAGCTCGATGGTCTCCAATGGCGGTGGCAGCGTGGCCATGCAG
CGCGATGATGAGTACAGGAATCGGATCATGAAAATACGTAGACTTGATAC
ACAAGCAAAACATTCACATGGATTTCTCTATTCGGACGAGGAAATCAGCG
ATAAGGCATCAACATGCGGAAAATTGCTAATATTTCTTTCCGTGGCTCTT
GTGATAATGACGCTACCCTTCAGTCTCTTTGTTTGCTTTAAGGTGGTGCA
GGAGTACGAGCGCGCGGTTATCTTCCGTTTGGGTCGTCTTATGCAGGGCG
GTGCCAAGGGCCCAGGTATCTTCTTCATCCTGCCCTGCATTGACTCCTAT
GCCCGTGTGGACTTGCGTACTCGCACATACGATGTGCCACCGCAGGAGGT
TCTCACAAAGGATAGCGTTACGGTTTCGGTGGATTGCAGTGGTTTACTAT
CGGGTATCAAATGCGACCGTCTCTATCGCGAACGTGGAGAATGCTCACCA
TTCGAACCGGCTACTGGCACAGACTACTCTA
BO17738.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:07:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32245-PC | 1197 | CG32245-RC | 1..564 | 17..581 | 2735 | 99.4 | Plus |
CG32245-PA | 1194 | CG32245-RA | 164..561 | 183..581 | 1905 | 99.2 | Plus |
CG32245-PB | 1518 | CG32245-RB | 488..885 | 183..581 | 1905 | 99.2 | Plus |
CG32245-PA | 1194 | CG32245-RA | 51..163 | 34..146 | 565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42540-RB | 3219 | CG42540-RB | 80..646 | 14..581 | 2785 | 99.5 | Plus |
CG42540-RI | 3899 | CG42540-RI | 780..1326 | 34..581 | 2685 | 99.5 | Plus |
CG42540-RK | 3887 | CG42540-RK | 780..1314 | 34..581 | 2495 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4586578..4586711 | 447..581 | 595 | 97.8 | Plus |
3L | 28110227 | 3L | 4578760..4578871 | 183..294 | 560 | 100 | Plus |
3L | 28110227 | 3L | 4563796..4563896 | 34..134 | 505 | 100 | Plus |
3L | 28110227 | 3L | 4580074..4580161 | 363..450 | 440 | 100 | Plus |
3L | 28110227 | 3L | 4579445..4579521 | 291..367 | 385 | 100 | Plus |
3L | 28110227 | 3L | 4577916..4577952 | 146..182 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:05:53 has no hits.
BO17738.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:17 Download gff for
BO17738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32245-PC | 1..563 | 17..580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:32:00 Download gff for
BO17738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42540-RB | 77..645 | 9..580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:22:24 Download gff for
BO17738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42540-RB | 77..645 | 9..580 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:22:24 Download gff for
BO17738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4556163..4556186 | 9..34 | 92 | -> | Plus |
3L | 4563797..4563904 | 35..146 | 93 | -> | Plus |
3L | 4577917..4577952 | 147..182 | 100 | -> | Plus |
3L | 4578760..4578869 | 183..292 | 100 | -> | Plus |
3L | 4579447..4579519 | 293..365 | 100 | -> | Plus |
3L | 4580077..4580159 | 366..448 | 100 | -> | Plus |
3L | 4586580..4586710 | 449..580 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:32:00 Download gff for
BO17738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4556163..4556186 | 9..34 | 92 | -> | Plus |
arm_3L | 4563797..4563904 | 35..146 | 93 | -> | Plus |
arm_3L | 4577917..4577952 | 147..182 | 100 | -> | Plus |
arm_3L | 4578760..4578869 | 183..292 | 100 | -> | Plus |
arm_3L | 4579447..4579519 | 293..365 | 100 | -> | Plus |
arm_3L | 4580077..4580159 | 366..448 | 100 | -> | Plus |
arm_3L | 4586580..4586710 | 449..580 | 97 | | Plus |
BO17738.complete Sequence
1228 bp assembled on 2007-03-23
GenBank Submission: FJ634197
> BO17738.complete
GAAGTTATCAGTCGACATGGCGGCAATGAGTGCGGATATTGTGCCCATGG
AACAAGTGAGCTCGATGGTCTCCAATGGCGGTGGCAGCGTGGCCATGCAG
CGCGATGATGAGTACAGGAATCGGATCATGAAAATACGTAGACTTGATAC
ACAAGCAAAACATTCACATGGATTTCTCTATTCGGACGAGGAAATCAGCG
ATAAGGCATCAACATGCGGAAAATTGCTAATATTTCTTTCCGTGGCTCTT
GTGATAATGACGCTACCCTTCAGTCTCTTTGTTTGCTTTAAGGTGGTGCA
GGAGTACGAGCGCGCGGTTATCTTCCGTTTGGGTCGTCTTATGCAGGGCG
GTGCCAAGGGCCCAGGTATCTTCTTCATCCTGCCCTGCATTGACTCCTAT
GCCCGTGTGGACTTGCGTACTCGCACATACGATGTGCCACCGCAGGAGGT
TCTCACAAAGGATAGCGTTACGGTTTCGGTGGATGCAGTGGTTTACTATC
GGGTATCAAATGCGACCGTCTCTATCGCGAACGTGGAGAATGCTCACCAT
TCGACCAGGCTACTGGCACAGACTACTCTACGAAACACAATGGGAACTCG
GCATTTGCATGAGATACTCAGCGAGCGTATGACGATTTCCGGCACAATGC
AGGTTCAACTCGACGAAGCCACCGATGCCTGGGGCATCAAAGTTGAACGT
GTGGAAATCAAGGACGTGCGTCTGCCGGTGCAACTGCAACGTGCCATGGC
CGCGGAGGCAGAAGCCGCCCGGGAAGCCCGCGCCAAAGTCATCGCCGCCG
AAGGAGAACAGAAGGCGTCGAGGGCTCTTCGCGAGGCGTCCGAGGTGATT
GGCGATTCGCCGGCTGCCCTCCAACTGCGCTACCTTCAGACACTCAACAC
CATATCTGCGGAGAAGAACTCGACGATTGTGTTCCCGCTGCCCATCGATT
TAATAACATATTTCCTGAAGACCAACGAGGCCACAACGCAGCAAAATGCC
CGAGCAGCTGCGGCAGCAATTGGCAACACACCGCCGCCATTGCAACTGGC
GCCGCAGCAGCAGATGGGGCAGCAGCAACAGCCGCAGTACCAACAGCCGC
AGCAGCAGCAGCAGCAGTACCAACCGCAGCAGCAACAACAGCAGCAGCAG
CAACAGCCGCAGCAGCAAGATCAACTCTATCAACAGGGGCAGCAGATCTC
ATCAGCCATGGCAAGCTTTCTAGACCAT
BO17738.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42540-RB | 1197 | CG42540-PB | 1..1194 | 17..1210 | 5970 | 100 | Plus |
CG42540-RI | 1230 | CG42540-PI | 51..1227 | 34..1210 | 5885 | 100 | Plus |
CG42540-RK | 1218 | CG42540-PK | 51..1215 | 34..1210 | 5670 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42540-RB | 3219 | CG42540-RB | 80..1276 | 14..1210 | 5985 | 100 | Plus |
CG42540-RI | 3899 | CG42540-RI | 780..1956 | 34..1210 | 5885 | 100 | Plus |
CG42540-RK | 3887 | CG42540-RK | 780..1944 | 34..1210 | 5670 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4590026..4590352 | 884..1210 | 1635 | 100 | Plus |
3L | 28110227 | 3L | 4586578..4586785 | 447..654 | 1040 | 100 | Plus |
3L | 28110227 | 3L | 4589787..4589967 | 709..889 | 905 | 100 | Plus |
3L | 28110227 | 3L | 4578760..4578871 | 183..294 | 560 | 100 | Plus |
3L | 28110227 | 3L | 4563796..4563896 | 34..134 | 505 | 100 | Plus |
3L | 28110227 | 3L | 4580074..4580161 | 363..450 | 440 | 100 | Plus |
3L | 28110227 | 3L | 4579445..4579521 | 291..367 | 385 | 100 | Plus |
3L | 28110227 | 3L | 4588066..4588124 | 650..708 | 295 | 100 | Plus |
X | 23542271 | X | 19186315..19186413 | 746..844 | 210 | 80.8 | Plus |
3L | 28110227 | 3L | 4577916..4577952 | 146..182 | 185 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:08:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Tel | 2485 | Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). | 1502..1565 | 958..895 | 121 | 69.2 | Minus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 514..661 | 837..685 | 114 | 54.9 | Minus |
BO17738.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:11 Download gff for
BO17738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32245-RC | 1..1197 | 17..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:16 Download gff for
BO17738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32245-RC | 83..1276 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:08 Download gff for
BO17738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42540-RB | 83..1276 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:12 Download gff for
BO17738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32245-RC | 77..1279 | 9..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:55 Download gff for
BO17738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42540-RB | 83..1276 | 17..1212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:55 Download gff for
BO17738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4556169..4556186 | 17..34 | 100 | -> | Plus |
3L | 4563797..4563904 | 35..146 | 93 | -> | Plus |
3L | 4577917..4577952 | 147..182 | 100 | -> | Plus |
3L | 4578760..4578869 | 183..292 | 100 | -> | Plus |
3L | 4579447..4579519 | 293..365 | 100 | -> | Plus |
3L | 4580077..4580159 | 366..448 | 100 | -> | Plus |
3L | 4586580..4586783 | 449..652 | 100 | -> | Plus |
3L | 4588069..4588124 | 653..708 | 100 | -> | Plus |
3L | 4589787..4589967 | 709..889 | 100 | -> | Plus |
3L | 4590032..4590352 | 890..1212 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:08 Download gff for
BO17738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4556169..4556186 | 17..34 | 100 | -> | Plus |
arm_3L | 4563797..4563904 | 35..146 | 93 | -> | Plus |
arm_3L | 4577917..4577952 | 147..182 | 100 | -> | Plus |
arm_3L | 4578760..4578869 | 183..292 | 100 | -> | Plus |
arm_3L | 4579447..4579519 | 293..365 | 100 | -> | Plus |
arm_3L | 4580077..4580159 | 366..448 | 100 | -> | Plus |
arm_3L | 4586580..4586783 | 449..652 | 100 | -> | Plus |
arm_3L | 4588069..4588124 | 653..708 | 100 | -> | Plus |
arm_3L | 4589787..4589967 | 709..889 | 100 | -> | Plus |
arm_3L | 4590032..4590352 | 890..1212 | 99 | | Plus |
BO17738.pep Sequence
Translation from 16 to 1228
> BO17738.pep
MAAMSADIVPMEQVSSMVSNGGGSVAMQRDDEYRNRIMKIRRLDTQAKHS
HGFLYSDEEISDKASTCGKLLIFLSVALVIMTLPFSLFVCFKVVQEYERA
VIFRLGRLMQGGAKGPGIFFILPCIDSYARVDLRTRTYDVPPQEVLTKDS
VTVSVDAVVYYRVSNATVSIANVENAHHSTRLLAQTTLRNTMGTRHLHEI
LSERMTISGTMQVQLDEATDAWGIKVERVEIKDVRLPVQLQRAMAAEAEA
AREARAKVIAAEGEQKASRALREASEVIGDSPAALQLRYLQTLNTISAEK
NSTIVFPLPIDLITYFLKTNEATTQQNARAAAAAIGNTPPPLQLAPQQQM
GQQQQPQYQQPQQQQQQYQPQQQQQQQQQQPQQQDQLYQQGQQISSAMAS
FLDH
BO17738.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42540-PB | 398 | CG32245-PC | 1..398 | 1..398 | 1990 | 100 | Plus |
CG42540-PI | 409 | CG42540-PI | 18..409 | 7..398 | 1964 | 100 | Plus |
CG42540-PK | 405 | CG42540-PK | 18..405 | 7..398 | 1926 | 98.7 | Plus |
CG42540-PC | 397 | CG32245-PA | 18..397 | 7..398 | 1870 | 96.7 | Plus |
CG42540-PH | 393 | CG42540-PH | 18..393 | 7..398 | 1848 | 95.7 | Plus |