Clone BO17738 Report

Search the DGRC for BO17738

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG42540-RB
Protein status:BO17738.pep: validated full length
Sequenced Size:1228

Clone Sequence Records

BO17738.3prime Sequence

645 bp (618 high quality bases) assembled on 2006-10-13

> BO17738.3prime
ATGGTCTAGAAAGCTTGCCATGGCTGATGAGATCTGCTGCCCCTGTTGAT
AGAGTTGATCTTGCTGCTGCGGCTGTTGCTGCTGCTGCTGTTGTTGCTGC
TGCGGTTGGTACTGCTGCTGCTGCTGCTGCGGCTGTTGGTACTGCGGCTG
TTGCTGCTGCCCCATCTGCTGCTGCGGCGCCAGTTGCAATGGCGGCGGTG
TGTTGCCAATTGCTGCCGCAGCTGCTCGGGCATTTTGCTGCGTTGTGGCC
TCGTTGGTCTTCAGGAAATATGTTATTAAATCGATGGGCAGCGGGAACAC
AATCGTCGAGTTCTTCTCCGCAGATATGGTGTTGAGTGTCTGAAGGTAGC
GCAGTTGGAGGGCAGCCGGCGAATCGCCAATCACCTCGGACGCCTCGCGA
AGAGCCCTCGACGCCTTCTGTTCTCCTTCGGCGGCGATGACTTTGGCGCG
GGCTTCCCGGGCGGCTTCTGCCTCCGCGGCCATGGCACGTTGCAGTTGCA
CCGGCAGACGCACGTCCTTGATTTCCACACGTTCAACTTTGATGCCCCAG
GCATCGGTGGCTTCGTCGAGTTGAACCTGCATTGTGCCGGAAATCGTCAT
ACGCTCGCTGAGTAATCTCATGCAAATGCCGAGTTCCCATTGTGT

BO17738.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG32245-PB 1518 CG32245-RB 890..1515 645..19 3095 99.8 Minus
CG32245-PC 1197 CG32245-RC 569..1194 645..19 3095 99.8 Minus
CG32245-PA 1194 CG32245-RA 566..1191 645..19 3095 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG42540-RG 3802 CG42540-RG 1234..1859 645..19 3110 99.8 Minus
CG42540-RJ 4175 CG42540-RJ 1607..2232 645..19 3110 99.8 Minus
CG42540-RI 3899 CG42540-RI 1331..1956 645..19 3110 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4590026..4590352 345..19 1635 100 Minus
3L 28110227 3L 4589787..4589967 520..340 905 100 Minus
3L 28110227 3L 4586716..4586785 645..575 305 98.6 Minus
3L 28110227 3L 4588066..4588124 579..521 295 100 Minus
X 23542271 X 19186315..19186413 483..385 210 80.8 Minus
Blast to na_te.dros performed 2015-02-11 18:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tel 2485 Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). 1502..1565 271..334 121 69.2 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 514..661 392..544 114 54.9 Plus

BO17738.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:16 Download gff for BO17738.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32245-PA 566..1194 15..645 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:40:50 Download gff for BO17738.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42540-RI 1331..1959 15..645 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:53:17 Download gff for BO17738.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42540-RI 1331..1959 15..645 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:53:17 Download gff for BO17738.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4586716..4586783 577..645 98 -> Minus
3L 4588069..4588124 521..576 100 -> Minus
3L 4589787..4589967 340..520 100 -> Minus
3L 4590032..4590355 15..339 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:40:50 Download gff for BO17738.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4586716..4586783 577..645 98 -> Minus
arm_3L 4588069..4588124 521..576 100 -> Minus
arm_3L 4589787..4589967 340..520 100 -> Minus
arm_3L 4590032..4590355 15..339 99   Minus

BO17738.5prime Sequence

581 bp (580 high quality bases) assembled on 2006-10-13

> BO17738.5prime
GAAGTTATCAGTCGACATGGCGGCAATGAGTGCGGATATTGTGCCCATGG
AACAAGTGAGCTCGATGGTCTCCAATGGCGGTGGCAGCGTGGCCATGCAG
CGCGATGATGAGTACAGGAATCGGATCATGAAAATACGTAGACTTGATAC
ACAAGCAAAACATTCACATGGATTTCTCTATTCGGACGAGGAAATCAGCG
ATAAGGCATCAACATGCGGAAAATTGCTAATATTTCTTTCCGTGGCTCTT
GTGATAATGACGCTACCCTTCAGTCTCTTTGTTTGCTTTAAGGTGGTGCA
GGAGTACGAGCGCGCGGTTATCTTCCGTTTGGGTCGTCTTATGCAGGGCG
GTGCCAAGGGCCCAGGTATCTTCTTCATCCTGCCCTGCATTGACTCCTAT
GCCCGTGTGGACTTGCGTACTCGCACATACGATGTGCCACCGCAGGAGGT
TCTCACAAAGGATAGCGTTACGGTTTCGGTGGATTGCAGTGGTTTACTAT
CGGGTATCAAATGCGACCGTCTCTATCGCGAACGTGGAGAATGCTCACCA
TTCGAACCGGCTACTGGCACAGACTACTCTA

BO17738.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32245-PC 1197 CG32245-RC 1..564 17..581 2735 99.4 Plus
CG32245-PA 1194 CG32245-RA 164..561 183..581 1905 99.2 Plus
CG32245-PB 1518 CG32245-RB 488..885 183..581 1905 99.2 Plus
CG32245-PA 1194 CG32245-RA 51..163 34..146 565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG42540-RB 3219 CG42540-RB 80..646 14..581 2785 99.5 Plus
CG42540-RI 3899 CG42540-RI 780..1326 34..581 2685 99.5 Plus
CG42540-RK 3887 CG42540-RK 780..1314 34..581 2495 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4586578..4586711 447..581 595 97.8 Plus
3L 28110227 3L 4578760..4578871 183..294 560 100 Plus
3L 28110227 3L 4563796..4563896 34..134 505 100 Plus
3L 28110227 3L 4580074..4580161 363..450 440 100 Plus
3L 28110227 3L 4579445..4579521 291..367 385 100 Plus
3L 28110227 3L 4577916..4577952 146..182 185 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:05:53 has no hits.

BO17738.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:17 Download gff for BO17738.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32245-PC 1..563 17..580 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:32:00 Download gff for BO17738.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42540-RB 77..645 9..580 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:22:24 Download gff for BO17738.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42540-RB 77..645 9..580 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:22:24 Download gff for BO17738.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4556163..4556186 9..34 92 -> Plus
3L 4563797..4563904 35..146 93 -> Plus
3L 4577917..4577952 147..182 100 -> Plus
3L 4578760..4578869 183..292 100 -> Plus
3L 4579447..4579519 293..365 100 -> Plus
3L 4580077..4580159 366..448 100 -> Plus
3L 4586580..4586710 449..580 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:32:00 Download gff for BO17738.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4556163..4556186 9..34 92 -> Plus
arm_3L 4563797..4563904 35..146 93 -> Plus
arm_3L 4577917..4577952 147..182 100 -> Plus
arm_3L 4578760..4578869 183..292 100 -> Plus
arm_3L 4579447..4579519 293..365 100 -> Plus
arm_3L 4580077..4580159 366..448 100 -> Plus
arm_3L 4586580..4586710 449..580 97   Plus

BO17738.complete Sequence

1228 bp assembled on 2007-03-23

GenBank Submission: FJ634197

> BO17738.complete
GAAGTTATCAGTCGACATGGCGGCAATGAGTGCGGATATTGTGCCCATGG
AACAAGTGAGCTCGATGGTCTCCAATGGCGGTGGCAGCGTGGCCATGCAG
CGCGATGATGAGTACAGGAATCGGATCATGAAAATACGTAGACTTGATAC
ACAAGCAAAACATTCACATGGATTTCTCTATTCGGACGAGGAAATCAGCG
ATAAGGCATCAACATGCGGAAAATTGCTAATATTTCTTTCCGTGGCTCTT
GTGATAATGACGCTACCCTTCAGTCTCTTTGTTTGCTTTAAGGTGGTGCA
GGAGTACGAGCGCGCGGTTATCTTCCGTTTGGGTCGTCTTATGCAGGGCG
GTGCCAAGGGCCCAGGTATCTTCTTCATCCTGCCCTGCATTGACTCCTAT
GCCCGTGTGGACTTGCGTACTCGCACATACGATGTGCCACCGCAGGAGGT
TCTCACAAAGGATAGCGTTACGGTTTCGGTGGATGCAGTGGTTTACTATC
GGGTATCAAATGCGACCGTCTCTATCGCGAACGTGGAGAATGCTCACCAT
TCGACCAGGCTACTGGCACAGACTACTCTACGAAACACAATGGGAACTCG
GCATTTGCATGAGATACTCAGCGAGCGTATGACGATTTCCGGCACAATGC
AGGTTCAACTCGACGAAGCCACCGATGCCTGGGGCATCAAAGTTGAACGT
GTGGAAATCAAGGACGTGCGTCTGCCGGTGCAACTGCAACGTGCCATGGC
CGCGGAGGCAGAAGCCGCCCGGGAAGCCCGCGCCAAAGTCATCGCCGCCG
AAGGAGAACAGAAGGCGTCGAGGGCTCTTCGCGAGGCGTCCGAGGTGATT
GGCGATTCGCCGGCTGCCCTCCAACTGCGCTACCTTCAGACACTCAACAC
CATATCTGCGGAGAAGAACTCGACGATTGTGTTCCCGCTGCCCATCGATT
TAATAACATATTTCCTGAAGACCAACGAGGCCACAACGCAGCAAAATGCC
CGAGCAGCTGCGGCAGCAATTGGCAACACACCGCCGCCATTGCAACTGGC
GCCGCAGCAGCAGATGGGGCAGCAGCAACAGCCGCAGTACCAACAGCCGC
AGCAGCAGCAGCAGCAGTACCAACCGCAGCAGCAACAACAGCAGCAGCAG
CAACAGCCGCAGCAGCAAGATCAACTCTATCAACAGGGGCAGCAGATCTC
ATCAGCCATGGCAAGCTTTCTAGACCAT

BO17738.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG42540-RB 1197 CG42540-PB 1..1194 17..1210 5970 100 Plus
CG42540-RI 1230 CG42540-PI 51..1227 34..1210 5885 100 Plus
CG42540-RK 1218 CG42540-PK 51..1215 34..1210 5670 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG42540-RB 3219 CG42540-RB 80..1276 14..1210 5985 100 Plus
CG42540-RI 3899 CG42540-RI 780..1956 34..1210 5885 100 Plus
CG42540-RK 3887 CG42540-RK 780..1944 34..1210 5670 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4590026..4590352 884..1210 1635 100 Plus
3L 28110227 3L 4586578..4586785 447..654 1040 100 Plus
3L 28110227 3L 4589787..4589967 709..889 905 100 Plus
3L 28110227 3L 4578760..4578871 183..294 560 100 Plus
3L 28110227 3L 4563796..4563896 34..134 505 100 Plus
3L 28110227 3L 4580074..4580161 363..450 440 100 Plus
3L 28110227 3L 4579445..4579521 291..367 385 100 Plus
3L 28110227 3L 4588066..4588124 650..708 295 100 Plus
X 23542271 X 19186315..19186413 746..844 210 80.8 Plus
3L 28110227 3L 4577916..4577952 146..182 185 100 Plus
Blast to na_te.dros performed 2014-11-28 08:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tel 2485 Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). 1502..1565 958..895 121 69.2 Minus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 514..661 837..685 114 54.9 Minus

BO17738.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:11 Download gff for BO17738.complete
Subject Subject Range Query Range Percent Splice Strand
CG32245-RC 1..1197 17..1214 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:16 Download gff for BO17738.complete
Subject Subject Range Query Range Percent Splice Strand
CG32245-RC 83..1276 17..1212 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:08 Download gff for BO17738.complete
Subject Subject Range Query Range Percent Splice Strand
CG42540-RB 83..1276 17..1212 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:12 Download gff for BO17738.complete
Subject Subject Range Query Range Percent Splice Strand
CG32245-RC 77..1279 9..1214 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:55 Download gff for BO17738.complete
Subject Subject Range Query Range Percent Splice Strand
CG42540-RB 83..1276 17..1212 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:55 Download gff for BO17738.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4556169..4556186 17..34 100 -> Plus
3L 4563797..4563904 35..146 93 -> Plus
3L 4577917..4577952 147..182 100 -> Plus
3L 4578760..4578869 183..292 100 -> Plus
3L 4579447..4579519 293..365 100 -> Plus
3L 4580077..4580159 366..448 100 -> Plus
3L 4586580..4586783 449..652 100 -> Plus
3L 4588069..4588124 653..708 100 -> Plus
3L 4589787..4589967 709..889 100 -> Plus
3L 4590032..4590352 890..1212 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:08 Download gff for BO17738.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4556169..4556186 17..34 100 -> Plus
arm_3L 4563797..4563904 35..146 93 -> Plus
arm_3L 4577917..4577952 147..182 100 -> Plus
arm_3L 4578760..4578869 183..292 100 -> Plus
arm_3L 4579447..4579519 293..365 100 -> Plus
arm_3L 4580077..4580159 366..448 100 -> Plus
arm_3L 4586580..4586783 449..652 100 -> Plus
arm_3L 4588069..4588124 653..708 100 -> Plus
arm_3L 4589787..4589967 709..889 100 -> Plus
arm_3L 4590032..4590352 890..1212 99   Plus

BO17738.pep Sequence

Translation from 16 to 1228

> BO17738.pep
MAAMSADIVPMEQVSSMVSNGGGSVAMQRDDEYRNRIMKIRRLDTQAKHS
HGFLYSDEEISDKASTCGKLLIFLSVALVIMTLPFSLFVCFKVVQEYERA
VIFRLGRLMQGGAKGPGIFFILPCIDSYARVDLRTRTYDVPPQEVLTKDS
VTVSVDAVVYYRVSNATVSIANVENAHHSTRLLAQTTLRNTMGTRHLHEI
LSERMTISGTMQVQLDEATDAWGIKVERVEIKDVRLPVQLQRAMAAEAEA
AREARAKVIAAEGEQKASRALREASEVIGDSPAALQLRYLQTLNTISAEK
NSTIVFPLPIDLITYFLKTNEATTQQNARAAAAAIGNTPPPLQLAPQQQM
GQQQQPQYQQPQQQQQQYQPQQQQQQQQQQPQQQDQLYQQGQQISSAMAS
FLDH

BO17738.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG42540-PB 398 CG32245-PC 1..398 1..398 1990 100 Plus
CG42540-PI 409 CG42540-PI 18..409 7..398 1964 100 Plus
CG42540-PK 405 CG42540-PK 18..405 7..398 1926 98.7 Plus
CG42540-PC 397 CG32245-PA 18..397 7..398 1870 96.7 Plus
CG42540-PH 393 CG42540-PH 18..393 7..398 1848 95.7 Plus