Clone BO17740 Report

Search the DGRC for BO17740

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG3558-RA
Protein status:BO17740.pep: validated full length
Sequenced Size:3157

Clone Sequence Records

BO17740.3prime Sequence

735 bp (664 high quality bases) assembled on 2006-10-13

> BO17740.3prime
ATGGTCTAGAAAGCTTGCTAAAGACCCCTGCTCCGTGACCAGCACAACGC
TCTGCTCCTGCGCAATGGCAGCCAGCTCCTTAAGCCACTCGTCCATGAGC
ACAGCACATAGGGCCAGATCGCGTGATCGCTCGGTGCCACTTGTGCTGGC
GATGATTCCCATGGAGGCCACCGAGTCCAGGGACGCCGGCTCCGAGTTGA
AACCACCCGTCGACGGGCCGCCATCCAGACCGTGCAGAGTGCTCGCCGAG
TGGGTGGTTGTGTTCGACTGGGCGGAGAGCGTTAGGGTGGAACCTGCGAT
GCTGCTGTTGCTTCCCGATGCCGCTGTTGACGTCGCGTTGGCTCCTGTGC
GTGATGCTCCCGCTGGGGGCTGCGTACTCAAGCTGGTCTCGCATGTGCCT
GCGGACGTCTGAGCTTGTGATATGCCTCTTCCATCGTTGCTGGCATTATT
CCCCACCAGATTCGAGGCAGCTCCGGTGAAGAATGCGTAAATTTGTGATA
AGCCAGATGAAGCGGAGGATCCATTGGGTGGCGCTGTGGACGTGGAGGCG
GACTTTCTGCTAAACATGCTGGTAATGGATTTGCTGATGCTGCGACGCTT
GTTATCACTGCGCTTGAACGGATCGTAGGCACTGGTGGGCGTGGCCTGCA
CGGGCGTGGCGGCCGAGAGGGTCGCGTAGGCTGATCGCAGTTGACCCTGC
TGCTGGCCGGAGTTCGTTACCATCTGTTGCTGTTG

BO17740.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3558-PA 3126 CG3558-RA 2407..3123 735..19 3585 100 Minus
CG3558-PB 3087 CG3558-RB 2627..3084 476..19 2290 100 Minus
CG3558-PB 3087 CG3558-RB 2407..2629 735..513 1115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3558-RC 4255 CG3558-RC 3058..3774 735..19 3585 100 Minus
CG3558-RA 4199 CG3558-RA 3002..3718 735..19 3585 100 Minus
CG3558-RD 4221 CG3558-RD 3283..3740 476..19 2290 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2997790..2998245 474..19 2280 100 Minus
2L 23513712 2L 2996837..2997059 735..513 1115 100 Minus
2L 23513712 2L 2997491..2997531 513..473 205 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:44:53 has no hits.

BO17740.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:18 Download gff for BO17740.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3558-PA 2407..3126 16..735 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:02:56 Download gff for BO17740.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3558-RA 3002..3727 11..735 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:58:08 Download gff for BO17740.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3558-RA 3002..3727 11..735 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:58:08 Download gff for BO17740.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2996837..2997059 513..735 100 -> Minus
2L 2997492..2997530 474..512 100 -> Minus
2L 2997791..2998254 11..473 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:02:56 Download gff for BO17740.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2996837..2997059 513..735 100 -> Minus
arm_2L 2997492..2997530 474..512 100 -> Minus
arm_2L 2997791..2998254 11..473 99   Minus

BO17740.5prime Sequence

699 bp (637 high quality bases) assembled on 2006-10-13

> BO17740.5prime
GAAGTTATCAGTCGACATGTGGCTGCGCCAGAGCAGCGGTGGAGGCGTTG
CCTCCGTCGGACACGTCGGCCCACTGCGACAGCGACCCATCGACGCTGCC
ACAGACTGCGATCCGCGCGCTTGCTACGACAGCTTCTGTAAGCACTGGCA
GCAGGCCTTCGAGATCATCCAGCACAGTGCACCGCCCTCGCACGACGACG
TGCTGGGCGTGGTCTCGCACTTGGACTACATGGTCACCCTGCTGCTCGTG
GAGCTGCATCACTGCAACAAAGTCTCGCTGCCGGCGGCCGAGGCTAGTGG
TCCGCCTGCGGCGCCCTGCCTGGAATTCCTGCTCAGCGAGAATCTGCTGG
ACAAGCTGTACGAGTGGGCCTGCACCACGGGACGGTATGCCAACGCTGTG
AGGCTGGAGCAGCTGAAGCTGTACGAACTGCTCGTCAGCCACTCGCGCCA
CCAGCTGCTCTGCCACGAGCCCTTCCTGCGACCCCTGCTCAAGATACTGG
CATCCAGCCAGGGCGAGATCTTTCCGCCCGATCTCGAGAAGCGCCTGGTG
ATCCTGCTGAACCAGCTGTGCGTGGTTCTTATGCAGAATGTCCACCTGCT
GGACCTCTTTTTCTTCTCCGCCCAGACGCAGGTGCAGGAGCAGATATTAA
ATGGCAACGTGCCGCCACCCAAAAGCGGAACCACTACCAACTTCATAAT

BO17740.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3558-PA 3126 CG3558-RA 1..683 17..699 3390 99.8 Plus
CG3558-PB 3087 CG3558-RB 1..683 17..699 3390 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3558-RD 4221 CG3558-RD 633..1315 17..699 3400 99.9 Plus
CG3558-RC 4255 CG3558-RC 628..1310 17..699 3400 99.9 Plus
CG3558-RB 4160 CG3558-RB 596..1278 17..699 3400 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2993735..2994408 17..690 3355 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 11:00:53 has no hits.

BO17740.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:19 Download gff for BO17740.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3558-PB 1..683 17..699 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:34:10 Download gff for BO17740.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3558-RB 596..1278 17..699 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:55 Download gff for BO17740.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3558-RB 596..1278 17..699 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:55 Download gff for BO17740.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2993735..2994408 17..690 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:34:10 Download gff for BO17740.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2993735..2994408 17..690 99   Plus

BO17740.complete Sequence

3157 bp assembled on 2006-12-18

GenBank Submission: FJ634198

> BO17740.complete
GAAGTTATCAGTCGACATGTGGCTGCGCCAGAGCAGCGGTGGAGGCGTTG
CCTCCGTCGGACACGTCGGCCCACTGCGACAGCGACCCATCGACGCTGCC
ACAGACTGCGATCCGCGCGCTTGCTACGACAGCTTCTGTAAGCACTGGCA
GCAGGCCTTCGAGATCATCCAGCACAGTGCACCGCCCTCGCACGACGACG
TGCTGGGCGTGGTCTCGCACTTGGACTACATGGTCACCCTGCTGCTCGTG
GAGCTGCATCACTGCAACAAAGTCTCGCTGCCGGCGGCCGAGGCTAGTGG
TCCGCCTGCGGCGCCCTGCCTGGAATTCCTGCTCAGCGAGAATCTGCTGG
ACAAGCTGTACGAGTGGGCCTGCACCACGGGACGGTATGCCAACGCTGTG
AGGCTGGAGCAGCTGAAGCTGTACGAACTGCTCGTCAGCCACTCGCGCCA
CCAGCTGCTCTGCCACGAGCCCTTCCTGCGACCCCTGCTCAAGATACTGG
CATCCAGCCAGGGCGAGATCTTTCCGCCCGATCTCGAGAAGCGCCTGGTG
ATCCTGCTGAACCAGCTGTGCGTGGTTCTTATGCAGAATGTCCACCTGCT
GGACCTCTTTTTCTTCTCCGCCCAGACGCAGGTGCAGGAGCAGATATTAA
ATGGCAACGTGGCGCCACCCAAAAGCGGAACCACTACCAACTTCATAATA
TTTTCGCTGCTTATCCCGTACGTGCATCGCGAAGGCAGTCTTGGTCACCA
AGCGCGCGATGCTCTGCTGCTGTGCATGGCGCTTTCGCAGAAGAACTCCA
ACATTGGAACGTACATAGCCCAGTACTCCTCGATCTGCCCGCTGTTGGTG
ACCGGTCTGGGTGGGCTTTACTCGCGTCTGCCCAACAGCATCGAGATTAG
CTCCATCGACTGGCACCGGATAACGCCAGACGATGTGACAGAGATCCCGG
AGCTGACGCTGTTCATGAACGCCCTCGAGTTTTGCAATGCGGTGGTGCAG
GTGGCCCATGAGATGATCAAGCAGCAGTTGCTGGACTTCATGTACCAGGG
CTTTATTGTTCCCGTGCTGGGACCTGCGATCCTTCAGACGAACATCGACT
CGCAAATCTCGGCAATGTCGTACCTGGACCTGATCCTGCGCTCCATCACG
GAGCCCGGACTGCTGAGGGCCTTCGTTCGGTTTCTGCTCGATACGGAAAA
GTTTGACGGCGAACGGATACTTGATGCCCTGGTCGAGCGCCTGAACTCGC
CGGATGCCAATCTGTGCATGGTCACGATGGCATTGTTTGACACCCTGCTG
GGTCTGCACTGCGAGGACCTGATGCTGGAGCTGCTGCTCAAGTTCATGCT
GCCGGGCAAGCATGTGCCCATCTCACATCGCCACAAGATCAACAAAATCG
ATCCGTATTTGAATAGCAGTGAGTTCTTCCTCGAGCTCTCGCCCGATGTG
ATGAAGAGAGCCAGAGATCTGGCCAGGCCGAAGAGCGTCCACGAGCCTGT
GGTGAGTGAACTGACGCCTCTGCCGAGTCTCCCCTCTCCGGTCATGAGCA
AGACGATTGGAGCCAACTGGAACTATTACGGAGTGCACACCGGTGATAGT
TTGTATGCGAATATACAGGCATATCTCTTCGAGGCTCATTGGCGAATCGC
CCAGTGTCAAAAGGATTGCCTAAAATGGGCCAACAGCTATCGCTACCAAA
AGTGGCCTCGTCACGGGCAAGGAAGAGTCCATGCCCATGCCTTGGAGCTG
GCGCGACAGTTCTTTAGTGAGTTCGGTGGCGGTCCTATCGCCGCCAACGA
GACGGGTGAAAAGCAGCTGGACAGCTTGCAGTCAATTGGCGAGTCAAGCG
GCTACGAATCCTTCAAGTGGCGGCCAGCGGACGAGGAAAGCGAAGCCACG
GATACAACTGTGGCCACGACAGCCAGCGAGGCGGATATGGATCACAATAG
CAGCAGCCTTAGCAGCGTTCTTGGTGCATCCGGCAAACGCGAGTCATGGC
GGACTTCGAACAGCAATCGCAATGAATTAATATTGACGGACCTTGACTTC
TCGGAAGATTTGTTTGCGCAGGGCACCGTAAGCTTAGGTCCCTTTCTCAA
TGCCATTTGGGGCAAACTGCAAACCTTCACGAGCAATTCGCTGTACGTCA
ATCTCCACTTGACCGGGCTGATCACTCGCTTGGCCTGGTATCCCCTGCCG
TTGATTCACTCGCTGCTGCTGCGCTCTGACATAGCCATCACATCGGATAC
GCCCTCTTTTCACCAGGTGCTGCGCATTCTGAAGCAGCAAATAGATGCCG
AGCTGCCAGTGACGGAGGATTCGCTGGAGATCATTGATGTGGCGCGTTCG
TCGCTGATTGATCGAGAGTTCCGCTTGGCAAACGCGCGCAAGGGCAACGA
GGGCTCTCCAATGCATCATAGCCAACAGCAACAGATGGTAACGAACTCCG
GCCAGCAGCAGGGTCAACTGCGATCAGCCTACGCGACCCTCTCGGCCGCC
ACGCCCGTGCAGGCCACGCCCACCAGTGCCTACGATCCGTTCAAGCGCAG
TGATAACAAGCGTCGCAGCATCAGCAAATCCATTACCAGCATGTTTAGCA
GAAAGTCCGCCTCCACGTCCACAGCGCCACCCAATGGATCCTCCGCTTCA
TCTGGCTTATCACAAATTTACGCATTCTTCACCGGAGCTGCCTCGAATCT
GGTGGGGAATAATGCCAGCAACGATGGAAGAGGCATATCACAAGCTCAGA
CGTCCGCAGGCACATGCGAGACCAGCTTGAGTACGCAGCCCCCAGCGGGA
GCATCACGCACAGGAGCCAACGCGACGTCAACAGCGGCATCGGGAAGCAA
CAGCAGCATCGCAGGTTCCACCCTAACGCTCTCCGCCCAGTCGAACACAA
CCACCCACTCGGCGAGCACTCTGCACGGTCTGGATGGCGGCCCGTCGACG
GGTGGTTTCAACTCGGAGCCGGCGTCCCTGGACTCGGTGGCCTCCATGGG
AATCATCGCCAGCACAAGTGGCACCGAGCGATCACGCGATCTGGCCCTAT
GTGCTGTGCTCATGGACGAGTGGCTTAAGGAGCTGGCTGCCATTGCGCAG
GAGCAGAGCGTTGTGCTGGTCACGGAGCAGGGGTCTTTAGCAAGCTTTCT
AGACCAT

BO17740.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3558-RA 3126 CG3558-PA 1..3123 17..3139 15615 100 Plus
CG3558-RB 3087 CG3558-PB 1..2629 17..2645 13145 100 Plus
CG3558-RC 3150 CG3558-PC 1091..3147 1083..3139 10285 100 Plus
CG3558-RB 3087 CG3558-PB 2627..3084 2682..3139 2290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3558-RA 4199 CG3558-RA 596..3718 17..3139 15615 100 Plus
CG3558-RB 4160 CG3558-RB 596..3224 17..2645 13145 100 Plus
CG3558-RC 4255 CG3558-RC 1718..3774 1083..3139 10285 100 Plus
CG3558-RB 4160 CG3558-RB 3222..3679 2682..3139 2290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2995431..2996437 1083..2089 5035 100 Plus
2L 23513712 2L 2993735..2994408 17..690 3370 100 Plus
2L 23513712 2L 2996500..2997059 2086..2645 2800 100 Plus
2L 23513712 2L 2997790..2998245 2684..3139 2280 100 Plus
2L 23513712 2L 2994674..2995070 691..1087 1985 100 Plus
2L 23513712 2L 2997491..2997531 2645..2685 205 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:51:05 has no hits.

BO17740.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:03 Download gff for BO17740.complete
Subject Subject Range Query Range Percent Splice Strand
CG3558-RA 1..3126 17..3142 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:38 Download gff for BO17740.complete
Subject Subject Range Query Range Percent Splice Strand
CG3558-RA 605..3736 17..3147 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:46 Download gff for BO17740.complete
Subject Subject Range Query Range Percent Splice Strand
CG3558-RA 596..3718 17..3141 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:03 Download gff for BO17740.complete
Subject Subject Range Query Range Percent Splice Strand
CG3558-RA 605..3736 17..3147 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:36 Download gff for BO17740.complete
Subject Subject Range Query Range Percent Splice Strand
CG3558-RA 596..3718 17..3141 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:36 Download gff for BO17740.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2997791..2998245 2685..3141 99   Plus
2L 2996502..2997059 2088..2645 100 -> Plus
2L 2993735..2994408 17..690 100 -> Plus
2L 2994674..2995070 691..1087 100 -> Plus
2L 2995436..2996435 1088..2087 100 -> Plus
2L 2997492..2997530 2646..2684 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:46 Download gff for BO17740.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2993735..2994408 17..690 100 -> Plus
arm_2L 2994674..2995070 691..1087 100 -> Plus
arm_2L 2995436..2996435 1088..2087 100 -> Plus
arm_2L 2996502..2997059 2088..2645 100 -> Plus
arm_2L 2997492..2997530 2646..2684 100 -> Plus
arm_2L 2997791..2998245 2685..3141 99   Plus

BO17740.pep Sequence

Translation from 16 to 3157

> BO17740.pep
MWLRQSSGGGVASVGHVGPLRQRPIDAATDCDPRACYDSFCKHWQQAFEI
IQHSAPPSHDDVLGVVSHLDYMVTLLLVELHHCNKVSLPAAEASGPPAAP
CLEFLLSENLLDKLYEWACTTGRYANAVRLEQLKLYELLVSHSRHQLLCH
EPFLRPLLKILASSQGEIFPPDLEKRLVILLNQLCVVLMQNVHLLDLFFF
SAQTQVQEQILNGNVAPPKSGTTTNFIIFSLLIPYVHREGSLGHQARDAL
LLCMALSQKNSNIGTYIAQYSSICPLLVTGLGGLYSRLPNSIEISSIDWH
RITPDDVTEIPELTLFMNALEFCNAVVQVAHEMIKQQLLDFMYQGFIVPV
LGPAILQTNIDSQISAMSYLDLILRSITEPGLLRAFVRFLLDTEKFDGER
ILDALVERLNSPDANLCMVTMALFDTLLGLHCEDLMLELLLKFMLPGKHV
PISHRHKINKIDPYLNSSEFFLELSPDVMKRARDLARPKSVHEPVVSELT
PLPSLPSPVMSKTIGANWNYYGVHTGDSLYANIQAYLFEAHWRIAQCQKD
CLKWANSYRYQKWPRHGQGRVHAHALELARQFFSEFGGGPIAANETGEKQ
LDSLQSIGESSGYESFKWRPADEESEATDTTVATTASEADMDHNSSSLSS
VLGASGKRESWRTSNSNRNELILTDLDFSEDLFAQGTVSLGPFLNAIWGK
LQTFTSNSLYVNLHLTGLITRLAWYPLPLIHSLLLRSDIAITSDTPSFHQ
VLRILKQQIDAELPVTEDSLEIIDVARSSLIDREFRLANARKGNEGSPMH
HSQQQQMVTNSGQQQGQLRSAYATLSAATPVQATPTSAYDPFKRSDNKRR
SISKSITSMFSRKSASTSTAPPNGSSASSGLSQIYAFFTGAASNLVGNNA
SNDGRGISQAQTSAGTCETSLSTQPPAGASRTGANATSTAASGSNSSIAG
STLTLSAQSNTTTHSASTLHGLDGGPSTGGFNSEPASLDSVASMGIIAST
SGTERSRDLALCAVLMDEWLKELAAIAQEQSVVLVTEQGSLASFLDH

BO17740.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3558-PA 1041 CG3558-PA 1..1041 1..1041 5352 100 Plus
CG3558-PC 1049 CG3558-PC 1..1049 1..1041 5333 99.2 Plus
CG3558-PB 1028 CG3558-PB 1..1028 1..1041 5265 98.8 Plus
CG3558-PD 1036 CG3558-PD 1..1036 1..1041 5246 98 Plus