Clone BO17746 Report

Search the DGRC for BO17746

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:46
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO17746.pep: validated full length
Sequenced Size:508

Clone Sequence Records

BO17746.3prime Sequence

506 bp (506 high quality bases) assembled on 2006-10-13

> BO17746.3prime
ATGGTCTAGAAAGCTTGCGCATGCGCCATTGTAATTATCCAAATTCGGAA
TAATTACCAAACATTTTTCCACGTCGTCAGCATCAAATTGGGAAAAAAAA
ACAAGATGAGGAAAATGGGCGGAAAAACGCGGAGGGAGCAGATGAGTTAG
TGGCTTGCCAACTGAGATTTTGGCAGCATATTGCGAATGAGTTAAGTGTT
TGCTGGGGGAAATGAGGATGGCGAGCATGAGTTGGCAGCCCAGGGAGTTG
GTAATAGAAAGGAAAACAAGAAGAGGGCATAAAGCCGGCCACAAATCAGA
CAAATTTATCAACTCCAACTGCTGAATAACAGGGAAAGGCCACAGCTGTC
CAAAAGGGTTAACATGGAAAAAGGGAACTGCGAAAGCGCAAAGAAAGCGA
ATTGAGATGTAAAAGGATGTGGATCGAAAAGCTATTATAAATTTTGTGTT
ATAGTAAGTAAAACATTTAAACAGCGCTATATAGAAAGGCATGTCGACTG
ATAACT

BO17746.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG15316-PB 477 CG15316-RB 1..474 492..19 2370 100 Minus
CG15316-PA 477 CG15316-RA 1..474 492..19 2370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 17:58:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9423985..9424458 19..492 2370 100 Plus
Blast to na_te.dros performed 2015-02-12 17:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 6331..6403 353..426 124 64.9 Plus

BO17746.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:25 Download gff for BO17746.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15316-PA 1..477 15..492 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:42 Download gff for BO17746.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9423981..9424461 15..495 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:42 Download gff for BO17746.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9423981..9424461 15..495 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:51 Download gff for BO17746.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9318014..9318494 15..495 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:51 Download gff for BO17746.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9318014..9318494 15..495 99   Plus

BO17746.5prime Sequence

506 bp (506 high quality bases) assembled on 2006-10-13

> BO17746.5prime
GAAGTTATCAGTCGACATGCCTTTCTATATAGCGCTGTTTAAATGTTTTA
CTTACTATAACACAAAATTTATAATAGCTTTTCGATCCACATCCTTTTAC
ATCTCAATTCGCTTTCTTTGCGCTTTCGCAGTTCCCTTTTTCCATGTTAA
CCCTTTTGGACAGCTGTGGCCTTTCCCTGTTATTCAGCAGTTGGAGTTGA
TAAATTTGTCTGATTTGTGGCCGGCTTTATGCCCTCTTCTTGTTTTCCTT
TCTATTACCAACTCCCTGGGCTGCCAACTCATGCTCGCCATCCTCATTTC
CCCCAGCAAACACTTAACTCATTCGCAATATGCTGCCAAAATCTCAGTTG
GCAAGCCACTAACTCATCTGCTCCCTCCGCGTTTTTCCGCCCATTTTCCT
CATCTTGTTTTTTTTTCCCAATTTGATGCTGACGACGTGGAAAAATGTTT
GGTAATTATTCCGAATTTGGATAATTACAATGGCGCATGCGCAAGCTTTC
TAGACC

BO17746.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15316-PB 477 CG15316-RB 1..474 17..490 2370 100 Plus
CG15316-PA 477 CG15316-RA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 17:58:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9423985..9424458 490..17 2370 100 Minus
Blast to na_te.dros performed 2015-02-12 17:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 6331..6403 156..83 124 64.9 Minus

BO17746.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:25 Download gff for BO17746.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15316-PA 1..477 17..494 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:07 Download gff for BO17746.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9423981..9424461 14..494 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:07 Download gff for BO17746.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9423981..9424461 14..494 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:52 Download gff for BO17746.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9318014..9318494 14..494 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:52 Download gff for BO17746.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9318014..9318494 14..494 99   Minus

BO17746.complete Sequence

508 bp assembled on 2006-10-11

GenBank Submission: FJ634199

> BO17746.complete
GAAGTTATCAGTCGACATGCCTTTCTATATAGCGCTGTTTAAATGTTTTA
CTTACTATAACACAAAATTTATAATAGCTTTTCGATCCACATCCTTTTAC
ATCTCAATTCGCTTTCTTTGCGCTTTCGCAGTTCCCTTTTTCCATGTTAA
CCCTTTTGGACAGCTGTGGCCTTTCCCTGTTATTCAGCAGTTGGAGTTGA
TAAATTTGTCTGATTTGTGGCCGGCTTTATGCCCTCTTCTTGTTTTCCTT
TCTATTACCAACTCCCTGGGCTGCCAACTCATGCTCGCCATCCTCATTTC
CCCCAGCAAACACTTAACTCATTCGCAATATGCTGCCAAAATCTCAGTTG
GCAAGCCACTAACTCATCTGCTCCCTCCGCGTTTTTCCGCCCATTTTCCT
CATCTTGTTTTTTTTTCCCAATTTGATGCTGACGACGTGGAAAAATGTTT
GGTAATTATTCCGAATTTGGATAATTACAATGGCGCATGCGCAAGCTTTC
TAGACCAT

BO17746.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 00:25:23 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 00:25:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9423985..9424458 490..17 2370 100 Minus
Blast to na_te.dros performed 2014-11-28 00:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 6331..6403 156..83 124 64.9 Minus

BO17746.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:35 Download gff for BO17746.complete
Subject Subject Range Query Range Percent Splice Strand
CG32138-RC 1993..2013 217..237 95   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:11 Download gff for BO17746.complete
Subject Subject Range Query Range Percent Splice Strand
CG34339-RB 1878..2357 14..494 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:35 Download gff for BO17746.complete
Subject Subject Range Query Range Percent Splice Strand
CG34339-RB 1878..2357 14..494 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:12 Download gff for BO17746.complete
Subject Subject Range Query Range Percent Splice Strand
X 9423983..9424458 17..492 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:12 Download gff for BO17746.complete
Subject Subject Range Query Range Percent Splice Strand
X 9423983..9424458 17..492 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:51 Download gff for BO17746.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9318016..9318491 17..492 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:51 Download gff for BO17746.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9318016..9318491 17..492 99   Minus

BO17746.pep Sequence

Translation from 16 to 508

> BO17746.pep
MPFYIALFKCFTYYNTKFIIAFRSTSFYISIRFLCAFAVPFFHVNPFGQL
WPFPVIQQLELINLSDLWPALCPLLVFLSITNSLGCQLMLAILISPSKHL
THSQYAAKISVGKPLTHLLPPRFSAHFPHLVFFSQFDADDVEKCLVIIPN
LDNYNGACASFLDH
Sequence BO17746.pep has no blast hits.