Clone Sequence Records
BO17746.3prime Sequence
506 bp (506 high quality bases) assembled on 2006-10-13
> BO17746.3prime
ATGGTCTAGAAAGCTTGCGCATGCGCCATTGTAATTATCCAAATTCGGAA
TAATTACCAAACATTTTTCCACGTCGTCAGCATCAAATTGGGAAAAAAAA
ACAAGATGAGGAAAATGGGCGGAAAAACGCGGAGGGAGCAGATGAGTTAG
TGGCTTGCCAACTGAGATTTTGGCAGCATATTGCGAATGAGTTAAGTGTT
TGCTGGGGGAAATGAGGATGGCGAGCATGAGTTGGCAGCCCAGGGAGTTG
GTAATAGAAAGGAAAACAAGAAGAGGGCATAAAGCCGGCCACAAATCAGA
CAAATTTATCAACTCCAACTGCTGAATAACAGGGAAAGGCCACAGCTGTC
CAAAAGGGTTAACATGGAAAAAGGGAACTGCGAAAGCGCAAAGAAAGCGA
ATTGAGATGTAAAAGGATGTGGATCGAAAAGCTATTATAAATTTTGTGTT
ATAGTAAGTAAAACATTTAAACAGCGCTATATAGAAAGGCATGTCGACTG
ATAACT
BO17746.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15316-PB | 477 | CG15316-RB | 1..474 | 492..19 | 2370 | 100 | Minus |
CG15316-PA | 477 | CG15316-RA | 1..474 | 492..19 | 2370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 17:58:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9423985..9424458 | 19..492 | 2370 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 17:58:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 6331..6403 | 353..426 | 124 | 64.9 | Plus |
BO17746.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:25 Download gff for
BO17746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15316-PA | 1..477 | 15..492 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:42 Download gff for
BO17746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9423981..9424461 | 15..495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:42 Download gff for
BO17746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9423981..9424461 | 15..495 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:51 Download gff for
BO17746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9318014..9318494 | 15..495 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:51 Download gff for
BO17746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9318014..9318494 | 15..495 | 99 | | Plus |
BO17746.5prime Sequence
506 bp (506 high quality bases) assembled on 2006-10-13
> BO17746.5prime
GAAGTTATCAGTCGACATGCCTTTCTATATAGCGCTGTTTAAATGTTTTA
CTTACTATAACACAAAATTTATAATAGCTTTTCGATCCACATCCTTTTAC
ATCTCAATTCGCTTTCTTTGCGCTTTCGCAGTTCCCTTTTTCCATGTTAA
CCCTTTTGGACAGCTGTGGCCTTTCCCTGTTATTCAGCAGTTGGAGTTGA
TAAATTTGTCTGATTTGTGGCCGGCTTTATGCCCTCTTCTTGTTTTCCTT
TCTATTACCAACTCCCTGGGCTGCCAACTCATGCTCGCCATCCTCATTTC
CCCCAGCAAACACTTAACTCATTCGCAATATGCTGCCAAAATCTCAGTTG
GCAAGCCACTAACTCATCTGCTCCCTCCGCGTTTTTCCGCCCATTTTCCT
CATCTTGTTTTTTTTTCCCAATTTGATGCTGACGACGTGGAAAAATGTTT
GGTAATTATTCCGAATTTGGATAATTACAATGGCGCATGCGCAAGCTTTC
TAGACC
BO17746.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15316-PB | 477 | CG15316-RB | 1..474 | 17..490 | 2370 | 100 | Plus |
CG15316-PA | 477 | CG15316-RA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 17:58:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:58:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9423985..9424458 | 490..17 | 2370 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 17:58:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 6331..6403 | 156..83 | 124 | 64.9 | Minus |
BO17746.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:25 Download gff for
BO17746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15316-PA | 1..477 | 17..494 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:07 Download gff for
BO17746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9423981..9424461 | 14..494 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:07 Download gff for
BO17746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9423981..9424461 | 14..494 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:52 Download gff for
BO17746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9318014..9318494 | 14..494 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:52 Download gff for
BO17746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9318014..9318494 | 14..494 | 99 | | Minus |
BO17746.complete Sequence
508 bp assembled on 2006-10-11
GenBank Submission: FJ634199
> BO17746.complete
GAAGTTATCAGTCGACATGCCTTTCTATATAGCGCTGTTTAAATGTTTTA
CTTACTATAACACAAAATTTATAATAGCTTTTCGATCCACATCCTTTTAC
ATCTCAATTCGCTTTCTTTGCGCTTTCGCAGTTCCCTTTTTCCATGTTAA
CCCTTTTGGACAGCTGTGGCCTTTCCCTGTTATTCAGCAGTTGGAGTTGA
TAAATTTGTCTGATTTGTGGCCGGCTTTATGCCCTCTTCTTGTTTTCCTT
TCTATTACCAACTCCCTGGGCTGCCAACTCATGCTCGCCATCCTCATTTC
CCCCAGCAAACACTTAACTCATTCGCAATATGCTGCCAAAATCTCAGTTG
GCAAGCCACTAACTCATCTGCTCCCTCCGCGTTTTTCCGCCCATTTTCCT
CATCTTGTTTTTTTTTCCCAATTTGATGCTGACGACGTGGAAAAATGTTT
GGTAATTATTCCGAATTTGGATAATTACAATGGCGCATGCGCAAGCTTTC
TAGACCAT
BO17746.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 00:25:23 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 00:25:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9423985..9424458 | 490..17 | 2370 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:25:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 6331..6403 | 156..83 | 124 | 64.9 | Minus |
BO17746.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:35 Download gff for
BO17746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32138-RC | 1993..2013 | 217..237 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:11 Download gff for
BO17746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34339-RB | 1878..2357 | 14..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:35 Download gff for
BO17746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34339-RB | 1878..2357 | 14..494 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:12 Download gff for
BO17746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9423983..9424458 | 17..492 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:12 Download gff for
BO17746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9423983..9424458 | 17..492 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:51 Download gff for
BO17746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9318016..9318491 | 17..492 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:51 Download gff for
BO17746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9318016..9318491 | 17..492 | 99 | | Minus |
BO17746.pep Sequence
Translation from 16 to 508
> BO17746.pep
MPFYIALFKCFTYYNTKFIIAFRSTSFYISIRFLCAFAVPFFHVNPFGQL
WPFPVIQQLELINLSDLWPALCPLLVFLSITNSLGCQLMLAILISPSKHL
THSQYAAKISVGKPLTHLLPPRFSAHFPHLVFFSQFDADDVEKCLVIIPN
LDNYNGACASFLDH
Sequence BO17746.pep has no blast hits.