Clone Sequence Records
BO17752.5prime Sequence
753 bp (701 high quality bases) assembled on 2006-10-13
> BO17752.5prime
GAAGTTATCAGTCGACATGAACTCGGCAATCAAGGTGGGGGAGATATTCA
CGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGATCTAACCATGCAGCTG
CATCCCAATGCGGAGTCGCCATCGGGTTCTCAGATCCGCCAGGCGCTGAA
GAAGAAGGCCTTCGAGGACGCCGGCATTCCCGCCAAGCAAGTGCCCGTCC
AGCAGGTGCAACACGTTCTCCAGACGCTGCCACAACAGCAGCCGCAGCAG
CCCCTTCAGCAGCCACCTCCTCAAGTATTCAAGTCACAGCCAATCGTGCA
GCACGTACAGCTGGTGGCGCAGCCAAAGCAGATCATCCTGCATCCACAGT
CTAATACAACTACGACGGGCACGACGGTGACTGTTAAGCAGTACCAGCAG
ATGCAGAAGGCTGCGGCATTAGCGGCAGCCCAGGCTGCAGCCTCGACGGC
CAACAACACGCCCACCATCACGGAGAACATCATTATCCAGCAGCCCACTT
CGACTACGGCGACAGTGGTGCAGCAGCCACATATGGTGTCCACCTGCTCG
TCGACGCAGATCGTGGTGCCCGTTGTGTCGGCAGTGTCCACTGTTCCAAC
AGTACTCTCGCCCACGGTGGTGATTGCCGACGATGTGGTTAGCACCTCCA
ATCCTCCAGCGGCAGCGGCGACAGTAGGATCGCCAGCAGGGGCGCCAGCA
GGCTTAAAGTGCGGACCAGACGTGTCCATGACCCTCAATCGCATCAATGT
CCA
BO17752.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-PC | 819 | CG33695-RC | 1..737 | 17..753 | 3685 | 100 | Plus |
CG33695-PD | 825 | CG33695-RD | 23..743 | 33..753 | 3605 | 100 | Plus |
CG33695-PA | 918 | CG33695-RA | 210..836 | 127..753 | 3135 | 100 | Plus |
CG33695-PE | 918 | CG33695-RE | 210..836 | 127..753 | 3135 | 100 | Plus |
CG33695-PF | 843 | CG33695-RF | 135..761 | 127..753 | 3135 | 100 | Plus |
CG33695-PA | 918 | CG33695-RA | 1..110 | 17..126 | 550 | 100 | Plus |
CG33695-PE | 918 | CG33695-RE | 1..110 | 17..126 | 550 | 100 | Plus |
CG33695-PF | 843 | CG33695-RF | 1..35 | 92..126 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-RC | 1430 | CG33695-RC | 92..829 | 16..753 | 3690 | 100 | Plus |
CG33695-RD | 1300 | CG33695-RD | 114..834 | 33..753 | 3605 | 100 | Plus |
CG33695-RE | 1394 | CG33695-RE | 302..928 | 127..753 | 3135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11278754..11279381 | 126..753 | 3140 | 100 | Plus |
2L | 23513712 | 2L | 11278392..11278485 | 33..126 | 470 | 100 | Plus |
Blast to na_te.dros performed 2015-01-30 18:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7028 | 201..507 | 198 | 55.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6939 | 200..330 | 169 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6941 | 226..444 | 163 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 200..263 | 140 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6827 | 200..266 | 137 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2860 | 200..273 | 136 | 64.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2602 | 221..531 | 135 | 54 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 92..194 | 163..263 | 132 | 60.2 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9122..9224 | 163..263 | 132 | 60.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1108 | 221..262 | 129 | 78.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1091..1168 | 200..276 | 126 | 64.1 | Plus |
BO17752.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:30 Download gff for
BO17752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-PC | 1..736 | 17..752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:54 Download gff for
BO17752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 88..828 | 10..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:09:05 Download gff for
BO17752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 88..828 | 10..752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:09:05 Download gff for
BO17752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11278394..11278485 | 35..126 | 100 | -> | Plus |
2L | 11278755..11279380 | 127..752 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:54 Download gff for
BO17752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11278394..11278485 | 35..126 | 100 | -> | Plus |
arm_2L | 11278755..11279380 | 127..752 | 100 | | Plus |
BO17752.3prime Sequence
729 bp (707 high quality bases) assembled on 2006-10-13
> BO17752.3prime
ATGGTCTAGAAAGCTTGCCCCGGCCACCTCCTCGCTGACAAAATCCAGCT
TGACCACCTCTGCGGGCAGGCACTCCTCCACGTCCACCTCGTTCTCCTGG
ACATTGATGCGATTGAGGGTCATGGACACGTCTGGTCCGCACTTTAAGCC
TGCTGGCGCCCCTGCTGGCGATCCTACTGTCGCCGCTGCCGCTGGAGGAT
TGGAGGTGCTAACCACATCGTCGGCAATCACCACCGTGGGCGAGAGTACT
GTTGGAACAGTGGACACTGCCGACACAACGGGCACCACGATCTGCGTCGA
CGAGCAGGTGGACACCATATGTGGCTGCTGCACCACTGTCGCCGTAGTCG
AAGTGGGCTGCTGGATAATGATGTTCTCCGTGATGGTGGGCGTGTTGTTG
GCCGTCGAGGCTGCAGCCTGGGCTGCCGCTAATGCCGCAGCCTTCTGCAT
CTGCTGGTACTGCTTAACAGTCACCGTCGTGCCCGTCGTAGTTGTATTAG
ACTGTGGATGCAGGATGATCTGCTTTGGCTGCGCCACCAGCTGTACGTGC
TGCACGATTGGCTGTGACTTGAATACTTGAGGAGGTGGCTGCTGAAGGGG
CTGCTGCGGCTGCTGTTGTGGCAGCGTCTGGAGAACGTGTTGCACCTGCT
GGACGGGCACTTGCTTGGCGGGGAATGCCGGCGTCCTCGAAGGCCTTCTT
CTTCAGCGCCTGGCGGATCTGAGAACCCG
BO17752.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-PC | 819 | CG33695-RC | 163..816 | 672..19 | 3270 | 100 | Minus |
CG33695-PD | 825 | CG33695-RD | 169..822 | 672..19 | 3270 | 100 | Minus |
CG33695-PF | 843 | CG33695-RF | 187..840 | 672..19 | 3270 | 100 | Minus |
CG33695-PA | 918 | CG33695-RA | 262..915 | 672..19 | 3270 | 100 | Minus |
CG33695-PE | 918 | CG33695-RE | 262..915 | 672..19 | 3270 | 100 | Minus |
CG33695-PC | 819 | CG33695-RC | 107..165 | 729..671 | 295 | 100 | Minus |
CG33695-PD | 825 | CG33695-RD | 113..171 | 729..671 | 295 | 100 | Minus |
CG33695-PF | 843 | CG33695-RF | 135..189 | 725..671 | 275 | 100 | Minus |
CG33695-PA | 918 | CG33695-RA | 210..264 | 725..671 | 275 | 100 | Minus |
CG33695-PE | 918 | CG33695-RE | 210..264 | 725..671 | 275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-RD | 1300 | CG33695-RD | 204..913 | 729..19 | 3530 | 99.9 | Minus |
CG33695-RC | 1430 | CG33695-RC | 199..908 | 729..19 | 3530 | 99.9 | Minus |
CG33695-RE | 1394 | CG33695-RE | 302..1007 | 725..19 | 3510 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:23:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11278754..11279460 | 726..19 | 3490 | 99.9 | Minus |
Blast to na_te.dros performed 2015-01-31 10:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7028 | 650..344 | 198 | 55.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6939 | 651..521 | 169 | 58.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6941 | 625..407 | 163 | 58.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 651..588 | 140 | 68.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6827 | 651..585 | 137 | 67.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2602 | 630..320 | 135 | 54 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1108 | 630..589 | 129 | 78.6 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1091..1168 | 651..575 | 126 | 64.1 | Minus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 92..194 | 689..588 | 125 | 60.6 | Minus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9122..9224 | 689..588 | 125 | 60.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..2860 | 630..578 | 121 | 69.8 | Minus |
BO17752.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:29 Download gff for
BO17752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-PD | 113..825 | 16..729 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:38:00 Download gff for
BO17752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 199..915 | 11..729 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:49 Download gff for
BO17752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 199..915 | 11..729 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:49 Download gff for
BO17752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11278752..11279467 | 11..729 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:38:00 Download gff for
BO17752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11278752..11279467 | 11..729 | 99 | | Minus |
BO17752.complete Sequence
850 bp assembled on 2006-10-11
GenBank Submission: FJ634201
> BO17752.complete
GAAGTTATCAGTCGACATGAACTCGGCAATCAAGGTGGGGGAGATATTCA
CGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGATCTAACCATGCAGCTG
CATCCCAATGCGGAGTCGCCATCGGGTTCTCAGATCCGCCAGGCGCTGAA
GAAGAAGGCCTTCGAGGACGCCGGCATTCCCGCCAAGCAAGTGCCCGTCC
AGCAGGTGCAACACGTTCTCCAGACGCTGCCACAACAGCAGCCGCAGCAG
CCCCTTCAGCAGCCACCTCCTCAAGTATTCAAGTCACAGCCAATCGTGCA
GCACGTACAGCTGGTGGCGCAGCCAAAGCAGATCATCCTGCATCCACAGT
CTAATACAACTACGACGGGCACGACGGTGACTGTTAAGCAGTACCAGCAG
ATGCAGAAGGCTGCGGCATTAGCGGCAGCCCAGGCTGCAGCCTCGACGGC
CAACAACACGCCCACCATCACGGAGAACATCATTATCCAGCAGCCCACTT
CGACTACGGCGACAGTGGTGCAGCAGCCACATATGGTGTCCACCTGCTCG
TCGACGCAGATCGTGGTGCCCGTTGTGTCGGCAGTGTCCACTGTTCCAAC
AGTACTCTCGCCCACGGTGGTGATTGCCGACGATGTGGTTAGCACCTCCA
ATCCTCCAGCGGCAGCGGCGACAGTAGGATCGCCAGCAGGGGCGCCAGCA
GGCTTAAAGTGCGGACCAGACGTGTCCATGACCCTCAATCGCATCAATGT
CCAGGAGAACGAGGTGGACGTGGAGGAGTGCCTGCCCGCAGAGGTGGTCA
AGCTGGATTTTGTCAGCGAGGAGGTGGCCGGGGCAAGCTTTCTAGACCAT
BO17752.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-RC | 819 | CG33695-PC | 1..816 | 17..832 | 4080 | 100 | Plus |
CG33695-RD | 825 | CG33695-PD | 23..822 | 33..832 | 4000 | 100 | Plus |
CG33695-RE | 918 | CG33695-PE | 210..915 | 127..832 | 3530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-RC | 1430 | CG33695-RC | 92..908 | 16..832 | 4085 | 100 | Plus |
CG33695-RD | 1300 | CG33695-RD | 114..913 | 33..832 | 4000 | 100 | Plus |
CG33695-RE | 1394 | CG33695-RE | 302..1007 | 127..832 | 3530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11278754..11279460 | 126..832 | 3535 | 100 | Plus |
2L | 23513712 | 2L | 11278392..11278485 | 33..126 | 470 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7028 | 201..507 | 198 | 55.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6939 | 200..330 | 169 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6941 | 226..444 | 163 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 200..263 | 140 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6827 | 200..266 | 137 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2860 | 200..273 | 136 | 64.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2602 | 221..531 | 135 | 54 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 92..194 | 163..263 | 132 | 60.2 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9122..9224 | 163..263 | 132 | 60.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1108 | 221..262 | 129 | 78.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1091..1168 | 200..276 | 126 | 64.1 | Plus |
BO17752.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:02 Download gff for
BO17752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 1..819 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:45 Download gff for
BO17752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 86..913 | 10..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:49 Download gff for
BO17752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 93..908 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:02 Download gff for
BO17752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 86..913 | 10..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:50 Download gff for
BO17752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 93..908 | 17..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:50 Download gff for
BO17752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11278113..11278130 | 17..34 | 100 | -> | Plus |
2L | 11278394..11278485 | 35..126 | 100 | -> | Plus |
2L | 11278755..11279460 | 127..834 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:49 Download gff for
BO17752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11278113..11278130 | 17..34 | 100 | -> | Plus |
arm_2L | 11278394..11278485 | 35..126 | 100 | -> | Plus |
arm_2L | 11278755..11279460 | 127..834 | 99 | | Plus |
BO17752.pep Sequence
Translation from 16 to 850
> BO17752.pep
MNSAIKVGEIFTAAGQAFSRLGDLTMQLHPNAESPSGSQIRQALKKKAFE
DAGIPAKQVPVQQVQHVLQTLPQQQPQQPLQQPPPQVFKSQPIVQHVQLV
AQPKQIILHPQSNTTTTGTTVTVKQYQQMQKAAALAAAQAAASTANNTPT
ITENIIIQQPTSTTATVVQQPHMVSTCSSTQIVVPVVSAVSTVPTVLSPT
VVIADDVVSTSNPPAAAATVGSPAGAPAGLKCGPDVSMTLNRINVQENEV
DVEECLPAEVVKLDFVSEEVAGASFLDH
BO17752.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-PC | 272 | CG33695-PC | 1..272 | 1..272 | 1357 | 100 | Plus |
CG33695-PD | 274 | CG33695-PD | 7..274 | 5..272 | 1332 | 99.3 | Plus |
CG33695-PE | 305 | CG33695-PE | 1..305 | 1..272 | 1313 | 89.2 | Plus |
CG33695-PF | 280 | CG33695-PF | 1..280 | 26..272 | 1192 | 88.2 | Plus |