Clone BO17752 Report

Search the DGRC for BO17752

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG33695-RC
Protein status:BO17752.pep: validated full length
Sequenced Size:850

Clone Sequence Records

BO17752.5prime Sequence

753 bp (701 high quality bases) assembled on 2006-10-13

> BO17752.5prime
GAAGTTATCAGTCGACATGAACTCGGCAATCAAGGTGGGGGAGATATTCA
CGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGATCTAACCATGCAGCTG
CATCCCAATGCGGAGTCGCCATCGGGTTCTCAGATCCGCCAGGCGCTGAA
GAAGAAGGCCTTCGAGGACGCCGGCATTCCCGCCAAGCAAGTGCCCGTCC
AGCAGGTGCAACACGTTCTCCAGACGCTGCCACAACAGCAGCCGCAGCAG
CCCCTTCAGCAGCCACCTCCTCAAGTATTCAAGTCACAGCCAATCGTGCA
GCACGTACAGCTGGTGGCGCAGCCAAAGCAGATCATCCTGCATCCACAGT
CTAATACAACTACGACGGGCACGACGGTGACTGTTAAGCAGTACCAGCAG
ATGCAGAAGGCTGCGGCATTAGCGGCAGCCCAGGCTGCAGCCTCGACGGC
CAACAACACGCCCACCATCACGGAGAACATCATTATCCAGCAGCCCACTT
CGACTACGGCGACAGTGGTGCAGCAGCCACATATGGTGTCCACCTGCTCG
TCGACGCAGATCGTGGTGCCCGTTGTGTCGGCAGTGTCCACTGTTCCAAC
AGTACTCTCGCCCACGGTGGTGATTGCCGACGATGTGGTTAGCACCTCCA
ATCCTCCAGCGGCAGCGGCGACAGTAGGATCGCCAGCAGGGGCGCCAGCA
GGCTTAAAGTGCGGACCAGACGTGTCCATGACCCTCAATCGCATCAATGT
CCA

BO17752.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-PC 819 CG33695-RC 1..737 17..753 3685 100 Plus
CG33695-PD 825 CG33695-RD 23..743 33..753 3605 100 Plus
CG33695-PA 918 CG33695-RA 210..836 127..753 3135 100 Plus
CG33695-PE 918 CG33695-RE 210..836 127..753 3135 100 Plus
CG33695-PF 843 CG33695-RF 135..761 127..753 3135 100 Plus
CG33695-PA 918 CG33695-RA 1..110 17..126 550 100 Plus
CG33695-PE 918 CG33695-RE 1..110 17..126 550 100 Plus
CG33695-PF 843 CG33695-RF 1..35 92..126 175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-RC 1430 CG33695-RC 92..829 16..753 3690 100 Plus
CG33695-RD 1300 CG33695-RD 114..834 33..753 3605 100 Plus
CG33695-RE 1394 CG33695-RE 302..928 127..753 3135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11278754..11279381 126..753 3140 100 Plus
2L 23513712 2L 11278392..11278485 33..126 470 100 Plus
Blast to na_te.dros performed 2015-01-30 18:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..7028 201..507 198 55.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6939 200..330 169 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6941 226..444 163 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2373 200..263 140 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6827 200..266 137 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2787..2860 200..273 136 64.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2602 221..531 135 54 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 92..194 163..263 132 60.2 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9122..9224 163..263 132 60.2 Plus
roo 9092 roo DM_ROO 9092bp 1067..1108 221..262 129 78.6 Plus
roo 9092 roo DM_ROO 9092bp 1091..1168 200..276 126 64.1 Plus

BO17752.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:30 Download gff for BO17752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-PC 1..736 17..752 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:54 Download gff for BO17752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-RC 88..828 10..752 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:09:05 Download gff for BO17752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-RC 88..828 10..752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:09:05 Download gff for BO17752.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11278394..11278485 35..126 100 -> Plus
2L 11278755..11279380 127..752 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:54 Download gff for BO17752.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11278394..11278485 35..126 100 -> Plus
arm_2L 11278755..11279380 127..752 100   Plus

BO17752.3prime Sequence

729 bp (707 high quality bases) assembled on 2006-10-13

> BO17752.3prime
ATGGTCTAGAAAGCTTGCCCCGGCCACCTCCTCGCTGACAAAATCCAGCT
TGACCACCTCTGCGGGCAGGCACTCCTCCACGTCCACCTCGTTCTCCTGG
ACATTGATGCGATTGAGGGTCATGGACACGTCTGGTCCGCACTTTAAGCC
TGCTGGCGCCCCTGCTGGCGATCCTACTGTCGCCGCTGCCGCTGGAGGAT
TGGAGGTGCTAACCACATCGTCGGCAATCACCACCGTGGGCGAGAGTACT
GTTGGAACAGTGGACACTGCCGACACAACGGGCACCACGATCTGCGTCGA
CGAGCAGGTGGACACCATATGTGGCTGCTGCACCACTGTCGCCGTAGTCG
AAGTGGGCTGCTGGATAATGATGTTCTCCGTGATGGTGGGCGTGTTGTTG
GCCGTCGAGGCTGCAGCCTGGGCTGCCGCTAATGCCGCAGCCTTCTGCAT
CTGCTGGTACTGCTTAACAGTCACCGTCGTGCCCGTCGTAGTTGTATTAG
ACTGTGGATGCAGGATGATCTGCTTTGGCTGCGCCACCAGCTGTACGTGC
TGCACGATTGGCTGTGACTTGAATACTTGAGGAGGTGGCTGCTGAAGGGG
CTGCTGCGGCTGCTGTTGTGGCAGCGTCTGGAGAACGTGTTGCACCTGCT
GGACGGGCACTTGCTTGGCGGGGAATGCCGGCGTCCTCGAAGGCCTTCTT
CTTCAGCGCCTGGCGGATCTGAGAACCCG

BO17752.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-PC 819 CG33695-RC 163..816 672..19 3270 100 Minus
CG33695-PD 825 CG33695-RD 169..822 672..19 3270 100 Minus
CG33695-PF 843 CG33695-RF 187..840 672..19 3270 100 Minus
CG33695-PA 918 CG33695-RA 262..915 672..19 3270 100 Minus
CG33695-PE 918 CG33695-RE 262..915 672..19 3270 100 Minus
CG33695-PC 819 CG33695-RC 107..165 729..671 295 100 Minus
CG33695-PD 825 CG33695-RD 113..171 729..671 295 100 Minus
CG33695-PF 843 CG33695-RF 135..189 725..671 275 100 Minus
CG33695-PA 918 CG33695-RA 210..264 725..671 275 100 Minus
CG33695-PE 918 CG33695-RE 210..264 725..671 275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-RD 1300 CG33695-RD 204..913 729..19 3530 99.9 Minus
CG33695-RC 1430 CG33695-RC 199..908 729..19 3530 99.9 Minus
CG33695-RE 1394 CG33695-RE 302..1007 725..19 3510 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11278754..11279460 726..19 3490 99.9 Minus
Blast to na_te.dros performed 2015-01-31 10:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..7028 650..344 198 55.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6939 651..521 169 58.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6941 625..407 163 58.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2373 651..588 140 68.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6827 651..585 137 67.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2602 630..320 135 54 Minus
roo 9092 roo DM_ROO 9092bp 1067..1108 630..589 129 78.6 Minus
roo 9092 roo DM_ROO 9092bp 1091..1168 651..575 126 64.1 Minus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 92..194 689..588 125 60.6 Minus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9122..9224 689..588 125 60.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2808..2860 630..578 121 69.8 Minus

BO17752.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:29 Download gff for BO17752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-PD 113..825 16..729 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:38:00 Download gff for BO17752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-RC 199..915 11..729 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:49 Download gff for BO17752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-RC 199..915 11..729 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:49 Download gff for BO17752.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11278752..11279467 11..729 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:38:00 Download gff for BO17752.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11278752..11279467 11..729 99   Minus

BO17752.complete Sequence

850 bp assembled on 2006-10-11

GenBank Submission: FJ634201

> BO17752.complete
GAAGTTATCAGTCGACATGAACTCGGCAATCAAGGTGGGGGAGATATTCA
CGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGATCTAACCATGCAGCTG
CATCCCAATGCGGAGTCGCCATCGGGTTCTCAGATCCGCCAGGCGCTGAA
GAAGAAGGCCTTCGAGGACGCCGGCATTCCCGCCAAGCAAGTGCCCGTCC
AGCAGGTGCAACACGTTCTCCAGACGCTGCCACAACAGCAGCCGCAGCAG
CCCCTTCAGCAGCCACCTCCTCAAGTATTCAAGTCACAGCCAATCGTGCA
GCACGTACAGCTGGTGGCGCAGCCAAAGCAGATCATCCTGCATCCACAGT
CTAATACAACTACGACGGGCACGACGGTGACTGTTAAGCAGTACCAGCAG
ATGCAGAAGGCTGCGGCATTAGCGGCAGCCCAGGCTGCAGCCTCGACGGC
CAACAACACGCCCACCATCACGGAGAACATCATTATCCAGCAGCCCACTT
CGACTACGGCGACAGTGGTGCAGCAGCCACATATGGTGTCCACCTGCTCG
TCGACGCAGATCGTGGTGCCCGTTGTGTCGGCAGTGTCCACTGTTCCAAC
AGTACTCTCGCCCACGGTGGTGATTGCCGACGATGTGGTTAGCACCTCCA
ATCCTCCAGCGGCAGCGGCGACAGTAGGATCGCCAGCAGGGGCGCCAGCA
GGCTTAAAGTGCGGACCAGACGTGTCCATGACCCTCAATCGCATCAATGT
CCAGGAGAACGAGGTGGACGTGGAGGAGTGCCTGCCCGCAGAGGTGGTCA
AGCTGGATTTTGTCAGCGAGGAGGTGGCCGGGGCAAGCTTTCTAGACCAT

BO17752.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-RC 819 CG33695-PC 1..816 17..832 4080 100 Plus
CG33695-RD 825 CG33695-PD 23..822 33..832 4000 100 Plus
CG33695-RE 918 CG33695-PE 210..915 127..832 3530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-RC 1430 CG33695-RC 92..908 16..832 4085 100 Plus
CG33695-RD 1300 CG33695-RD 114..913 33..832 4000 100 Plus
CG33695-RE 1394 CG33695-RE 302..1007 127..832 3530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11278754..11279460 126..832 3535 100 Plus
2L 23513712 2L 11278392..11278485 33..126 470 100 Plus
Blast to na_te.dros performed 2014-11-28 00:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..7028 201..507 198 55.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6939 200..330 169 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6941 226..444 163 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2373 200..263 140 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6827 200..266 137 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2787..2860 200..273 136 64.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2602 221..531 135 54 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 92..194 163..263 132 60.2 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9122..9224 163..263 132 60.2 Plus
roo 9092 roo DM_ROO 9092bp 1067..1108 221..262 129 78.6 Plus
roo 9092 roo DM_ROO 9092bp 1091..1168 200..276 126 64.1 Plus

BO17752.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:02 Download gff for BO17752.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RC 1..819 17..835 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:45 Download gff for BO17752.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RC 86..913 10..840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:49 Download gff for BO17752.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RC 93..908 17..834 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:02 Download gff for BO17752.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RC 86..913 10..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:50 Download gff for BO17752.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RC 93..908 17..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:50 Download gff for BO17752.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11278113..11278130 17..34 100 -> Plus
2L 11278394..11278485 35..126 100 -> Plus
2L 11278755..11279460 127..834 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:49 Download gff for BO17752.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11278113..11278130 17..34 100 -> Plus
arm_2L 11278394..11278485 35..126 100 -> Plus
arm_2L 11278755..11279460 127..834 99   Plus

BO17752.pep Sequence

Translation from 16 to 850

> BO17752.pep
MNSAIKVGEIFTAAGQAFSRLGDLTMQLHPNAESPSGSQIRQALKKKAFE
DAGIPAKQVPVQQVQHVLQTLPQQQPQQPLQQPPPQVFKSQPIVQHVQLV
AQPKQIILHPQSNTTTTGTTVTVKQYQQMQKAAALAAAQAAASTANNTPT
ITENIIIQQPTSTTATVVQQPHMVSTCSSTQIVVPVVSAVSTVPTVLSPT
VVIADDVVSTSNPPAAAATVGSPAGAPAGLKCGPDVSMTLNRINVQENEV
DVEECLPAEVVKLDFVSEEVAGASFLDH

BO17752.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-PC 272 CG33695-PC 1..272 1..272 1357 100 Plus
CG33695-PD 274 CG33695-PD 7..274 5..272 1332 99.3 Plus
CG33695-PE 305 CG33695-PE 1..305 1..272 1313 89.2 Plus
CG33695-PF 280 CG33695-PF 1..280 26..272 1192 88.2 Plus