Clone Sequence Records
BO17753.3prime Sequence
844 bp (763 high quality bases) assembled on 2006-10-13
> BO17753.3prime
ATGGTCTAGAAAGCTTGCGTACAAATTAAATATTTCCAAATTTACATAAT
CGCGGTTAGCCATGACAAAAGCCTTGTGCGCATTGACTTGAATGGCCAGA
TCCACGATATTCGTATTGCTAAAGTAGTCCATGGCAACCACATTGGCATT
ATAGCCCCAAGGTCCTTTTAGCCACTTATTTATCTTGGGATTCAGCACCG
CCGCCCGCTCCTTGGCGGTCTGCAATTGGTGGGCGTTCAGTGTCTGCTCC
ATGCTCCTCACCGCCGTGAATATCCATCCAACATTCCGAACTGGAGAATC
CGGCTTCCTGCTGAACAACAGACGCATATAGTCCAGAGTTTGAGAAATAT
TCATAAAGCTGGTGCTAAAACGCTGCCACGGCGGGCAGAGCATGTTCGAT
TCTCTGTCCGGATAGGGCAGCTCCTGCGTGGGAAATAATATCACCAGATG
CCTCTTTTGAAGCAGTATTTCGCTGAAATTTCGATTCGCACAGTTTTCGT
CCTTGCCCACATTACGCCGATAGGTCTCATCGCCCAGCTCCTGGCGAATT
AGCCGGAATAGCGAGCTGTAGATCTCTGGATGCTTGTAAAAGCCGATGGG
AAAACTACTAAAATCCAGGACTACCACTTCGCCAGATCTTTTAACAAACT
GACGAACATCACGTAGAACTGTGAGTAGCGGTGTAATCAGCATATTCTCG
TTGGCTATCCAGAAATTATCGGCATCATTCTCGGTGTTCATGTTCTTGTA
TCCAATGCTTAAATCGAGATAACGTATGCCAAAGACTAGCTGCGACCAAA
CATCGAGCTGCTGGGCCACCAGGTAATCCCTGACCAGTATCGAA
BO17753.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5895-PA | 1362 | CG5895-RA | 534..1359 | 844..19 | 4130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:24:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5895-RC | 1415 | CG5895-RC | 522..1347 | 844..19 | 4130 | 100 | Minus |
CG5895-RA | 1512 | CG5895-RA | 619..1444 | 844..19 | 4130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:23:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16036775..16037159 | 403..19 | 1925 | 100 | Minus |
3L | 28110227 | 3L | 16036351..16036701 | 752..402 | 1755 | 100 | Minus |
3L | 28110227 | 3L | 16036199..16036291 | 844..752 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:23:58 has no hits.
BO17753.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:30 Download gff for
BO17753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-PA | 536..1362 | 16..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:38:01 Download gff for
BO17753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-RA | 619..1450 | 11..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:51 Download gff for
BO17753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-RA | 619..1450 | 11..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:51 Download gff for
BO17753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16036199..16036291 | 752..844 | 100 | -> | Minus |
3L | 16036352..16036701 | 402..751 | 100 | -> | Minus |
3L | 16036777..16037165 | 11..401 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:38:01 Download gff for
BO17753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16029299..16029391 | 752..844 | 100 | -> | Minus |
arm_3L | 16029452..16029801 | 402..751 | 100 | -> | Minus |
arm_3L | 16029877..16030265 | 11..401 | 98 | | Minus |
BO17753.5prime Sequence
812 bp (780 high quality bases) assembled on 2006-10-13
> BO17753.5prime
GAAGTTATCAGTCGACATGATAAAAGCGTATATAATTTTGGTGCCTTTGC
TGCAGTCAATTCTTTTGATTGGCTCCCTTGAAGCGGGCTGTCCTGTTTAC
CTAACCATTTCGCTGACGGGCAAAACCCTGCAGGACACCTTTCTCGAGAT
CAACTGGGGCCCGAACTGCTATGGACCACCCGAGTGGGTGGGTATCTACA
GCCAGGATCCGGCCATCTCCAACTTTCAGCCAGATCTGCGCATCAATGGT
ATTTTCAATATAACCGGCAAAATGCAGACGCCCATCAAGCTGGGCAAGCT
TCGTTTTCCCGGTGGCTGGAACAAAAAAGATAGTAGCGATCAGCCGGCAA
CGCAATATCTCAAGGGCAAGTGCCTGCCACACTATGTGGCCAGCTACAAT
GGCACCGAGCTGCTCACGGTGGATTGCCTTAAGATACAGCCCAATTGGAT
GGGCCAGATCAAGGACATCAATCGAATGGCGCTGAAGGATATCTTCCTGC
CCGGCACACATGCCTCGGCGGCCGTCTTGGGCAGCTCCAGTAAGTCCAAT
TCGATACTGGTCAGGGATTACCTGGTGGCCCAGCAGCTCGATGTTTGGTC
GCAGCTAGTCTTTGGCATACGTTATCTCGATTTAAGCATTGGATACAAGA
ACATGAACACCGAGAATGATGCCGATAATTTCTGGATAGCCAACGAGAAT
ATGCTGATTACACCGCTACTCACAGTTCTACGTGATGTTCGTCAGTTTGT
TAAAAGATCTGGCGAAGTGGTAGTCCTGGATTTTAGTATTTTCCCATCGG
CTTTTCAAGCAT
BO17753.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5895-PA | 1362 | CG5895-RA | 1..772 | 17..788 | 3860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:55:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5895-RA | 1512 | CG5895-RA | 86..883 | 17..812 | 3940 | 99.7 | Plus |
CG5895-RC | 1415 | CG5895-RC | 54..786 | 82..812 | 3615 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16035731..16036291 | 82..642 | 2805 | 100 | Plus |
3L | 28110227 | 3L | 16036351..16036515 | 642..805 | 775 | 99.4 | Plus |
3L | 28110227 | 3L | 16035570..16035636 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:55:29 has no hits.
BO17753.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:31 Download gff for
BO17753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-PA | 1..798 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:23 Download gff for
BO17753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-RA | 83..883 | 14..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:38 Download gff for
BO17753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-RA | 83..883 | 14..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:38 Download gff for
BO17753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16035567..16035636 | 14..83 | 98 | -> | Plus |
3L | 16035733..16036291 | 84..642 | 100 | -> | Plus |
3L | 16036352..16036523 | 643..812 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:23 Download gff for
BO17753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16029452..16029623 | 643..812 | 98 | | Plus |
arm_3L | 16028667..16028736 | 14..83 | 98 | -> | Plus |
arm_3L | 16028833..16029391 | 84..642 | 100 | -> | Plus |
BO17753.complete Sequence
1393 bp assembled on 2006-10-11
GenBank Submission: FJ634202
> BO17753.complete
GAAGTTATCAGTCGACATGATAAAAGCGTATATAATTTTGGTGCCTTTGC
TGCAGTCAATTCTTTTGATTGGCTCCCTTGAAGCGGGCTGTCCTGTTTAC
CTAACCATTTCGCTGACGGGCAAAACCCTGCAGGACACCTTTCTCGAGAT
CAACTGGGGCCCGAACTGCTATGGACCACCCGAGTGGGTGGGTATCTACA
GCCAGGATCCGGCCATCTCCAACTTTCAGCCAGATCTGCGCATCAATGGT
ATTTTCAATATAACCGGCAAAATGCAGACGCCCATCAAGCTGGGCAAGCT
TCGTTTTCCCGGTGGCTGGAACAAAAAAGATAGTAGCGATCAGCCGGCAA
CGCAATATCTCAAGGGCAAGTGCCTGCCACACTATGTGGCCAGCTACAAT
GGCACCGAGCTGCTCACGGTGGATTGCCTTAAGATACAGCCCAATTGGAT
GGGCCAGATCAAGGACATCAATCGAATGGCGCTGAAGGATATCTTCCTGC
CCGGCACACATGCCTCGGCGGCCGTCTTGGGCAGCTCCAGTAAGTCCAAT
TCGATACTGGTCAGGGATTACCTGGTGGCCCAGCAGCTCGATGTTTGGTC
GCAGCTAGTCTTTGGCATACGTTATCTCGATTTAAGCATTGGATACAAGA
ACATGAACACCGAGAATGATGCCGATAATTTCTGGATAGCCAACGAGAAT
ATGCTGATTACACCGCTACTCACAGTTCTACGTGATGTTCGTCAGTTTGT
TAAAAGATCTGGCGAAGTGGTAGTCCTGGATTTTAGTAGTTTTCCCATCG
GCTTTTACAAGCATCCAGAGATCTACAGCTCGCTATTCCGGCTAATTCGC
CAGGAGCTGGGCGATGAGACCTATCGGCGTAATGTGGGCAAGGACGAAAA
CTGTGCGAATCGAAATTTCAGCGAAATACTGCTTCAAAAGAGGCATCTGG
TGATATTATTTCCCACGCAGGAGCTGCCCTATCCGGACAGAGAATCGAAC
ATGCTCTGCCCGCCGTGGCAGCGTTTTAGCACCAGCTTTATGAATATTTC
TCAAACTCTGGACTATATGCGTCTGTTGTTCAGCAGGAAGCCGGATTCTC
CAGTTCGGAATGTTGGATGGATATTCACGGCGGTGAGGAGCATGGAGCAG
ACACTGAACGCCCACCAATTGCAGACCGCCAAGGAGCGGGCGGCGGTGCT
GAATCCCAAGATAAATAAGTGGCTAAAAGGACCTTGGGGCTATAATGCCA
ATGTGGTTGCCATGGACTACTTTAGCAATACGAATATCGTGGATCTGGCC
ATTCAAGTCAATGCGCACAAGGCTTTTGTCATGGCTAACCGCGATTATGT
AAATTTGGAAATATTTAATTTGTACGCAAGCTTTCTAGACCAT
BO17753.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5895-RA | 1362 | CG5895-PA | 1..1359 | 17..1375 | 6795 | 100 | Plus |
CG5895-RC | 1107 | CG5895-PC | 1..1104 | 272..1375 | 5520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5895-RA | 1512 | CG5895-RA | 86..1444 | 17..1375 | 6795 | 100 | Plus |
CG5895-RC | 1415 | CG5895-RC | 54..1347 | 82..1375 | 6470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16035731..16036291 | 82..642 | 2805 | 100 | Plus |
3L | 28110227 | 3L | 16036775..16037159 | 991..1375 | 1925 | 100 | Plus |
3L | 28110227 | 3L | 16036351..16036701 | 642..992 | 1755 | 100 | Plus |
3L | 28110227 | 3L | 16035570..16035636 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:13:19 has no hits.
BO17753.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:46 Download gff for
BO17753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-RA | 1..1362 | 17..1378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:25 Download gff for
BO17753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-RA | 81..1448 | 14..1383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:18 Download gff for
BO17753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-RA | 86..1444 | 17..1377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:46 Download gff for
BO17753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-RA | 81..1448 | 14..1383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:56 Download gff for
BO17753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-RA | 86..1444 | 17..1377 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:56 Download gff for
BO17753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16035570..16035636 | 17..83 | 100 | -> | Plus |
3L | 16035733..16036291 | 84..642 | 100 | -> | Plus |
3L | 16036352..16036701 | 643..992 | 100 | -> | Plus |
3L | 16036777..16037159 | 993..1377 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:18 Download gff for
BO17753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16028670..16028736 | 17..83 | 100 | -> | Plus |
arm_3L | 16028833..16029391 | 84..642 | 100 | -> | Plus |
arm_3L | 16029452..16029801 | 643..992 | 100 | -> | Plus |
arm_3L | 16029877..16030259 | 993..1377 | 99 | | Plus |
BO17753.pep Sequence
Translation from 16 to 1393
> BO17753.pep
MIKAYIILVPLLQSILLIGSLEAGCPVYLTISLTGKTLQDTFLEINWGPN
CYGPPEWVGIYSQDPAISNFQPDLRINGIFNITGKMQTPIKLGKLRFPGG
WNKKDSSDQPATQYLKGKCLPHYVASYNGTELLTVDCLKIQPNWMGQIKD
INRMALKDIFLPGTHASAAVLGSSSKSNSILVRDYLVAQQLDVWSQLVFG
IRYLDLSIGYKNMNTENDADNFWIANENMLITPLLTVLRDVRQFVKRSGE
VVVLDFSSFPIGFYKHPEIYSSLFRLIRQELGDETYRRNVGKDENCANRN
FSEILLQKRHLVILFPTQELPYPDRESNMLCPPWQRFSTSFMNISQTLDY
MRLLFSRKPDSPVRNVGWIFTAVRSMEQTLNAHQLQTAKERAAVLNPKIN
KWLKGPWGYNANVVAMDYFSNTNIVDLAIQVNAHKAFVMANRDYVNLEIF
NLYASFLDH
BO17753.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5895-PA | 453 | CG5895-PA | 1..453 | 1..453 | 2392 | 100 | Plus |
CG5895-PC | 368 | CG5895-PC | 1..368 | 86..453 | 1940 | 100 | Plus |
CG14945-PA | 482 | CG14945-PA | 185..482 | 132..438 | 270 | 26 | Plus |
CG14945-PB | 482 | CG14945-PB | 185..482 | 132..438 | 270 | 26 | Plus |