Clone BO17753 Report

Search the DGRC for BO17753

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG5895-RA
Protein status:BO17753.pep: validated full length
Sequenced Size:1393

Clone Sequence Records

BO17753.3prime Sequence

844 bp (763 high quality bases) assembled on 2006-10-13

> BO17753.3prime
ATGGTCTAGAAAGCTTGCGTACAAATTAAATATTTCCAAATTTACATAAT
CGCGGTTAGCCATGACAAAAGCCTTGTGCGCATTGACTTGAATGGCCAGA
TCCACGATATTCGTATTGCTAAAGTAGTCCATGGCAACCACATTGGCATT
ATAGCCCCAAGGTCCTTTTAGCCACTTATTTATCTTGGGATTCAGCACCG
CCGCCCGCTCCTTGGCGGTCTGCAATTGGTGGGCGTTCAGTGTCTGCTCC
ATGCTCCTCACCGCCGTGAATATCCATCCAACATTCCGAACTGGAGAATC
CGGCTTCCTGCTGAACAACAGACGCATATAGTCCAGAGTTTGAGAAATAT
TCATAAAGCTGGTGCTAAAACGCTGCCACGGCGGGCAGAGCATGTTCGAT
TCTCTGTCCGGATAGGGCAGCTCCTGCGTGGGAAATAATATCACCAGATG
CCTCTTTTGAAGCAGTATTTCGCTGAAATTTCGATTCGCACAGTTTTCGT
CCTTGCCCACATTACGCCGATAGGTCTCATCGCCCAGCTCCTGGCGAATT
AGCCGGAATAGCGAGCTGTAGATCTCTGGATGCTTGTAAAAGCCGATGGG
AAAACTACTAAAATCCAGGACTACCACTTCGCCAGATCTTTTAACAAACT
GACGAACATCACGTAGAACTGTGAGTAGCGGTGTAATCAGCATATTCTCG
TTGGCTATCCAGAAATTATCGGCATCATTCTCGGTGTTCATGTTCTTGTA
TCCAATGCTTAAATCGAGATAACGTATGCCAAAGACTAGCTGCGACCAAA
CATCGAGCTGCTGGGCCACCAGGTAATCCCTGACCAGTATCGAA

BO17753.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5895-PA 1362 CG5895-RA 534..1359 844..19 4130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5895-RC 1415 CG5895-RC 522..1347 844..19 4130 100 Minus
CG5895-RA 1512 CG5895-RA 619..1444 844..19 4130 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16036775..16037159 403..19 1925 100 Minus
3L 28110227 3L 16036351..16036701 752..402 1755 100 Minus
3L 28110227 3L 16036199..16036291 844..752 465 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:23:58 has no hits.

BO17753.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:30 Download gff for BO17753.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5895-PA 536..1362 16..842 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:38:01 Download gff for BO17753.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 619..1450 11..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:51 Download gff for BO17753.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 619..1450 11..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:51 Download gff for BO17753.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16036199..16036291 752..844 100 -> Minus
3L 16036352..16036701 402..751 100 -> Minus
3L 16036777..16037165 11..401 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:38:01 Download gff for BO17753.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16029299..16029391 752..844 100 -> Minus
arm_3L 16029452..16029801 402..751 100 -> Minus
arm_3L 16029877..16030265 11..401 98   Minus

BO17753.5prime Sequence

812 bp (780 high quality bases) assembled on 2006-10-13

> BO17753.5prime
GAAGTTATCAGTCGACATGATAAAAGCGTATATAATTTTGGTGCCTTTGC
TGCAGTCAATTCTTTTGATTGGCTCCCTTGAAGCGGGCTGTCCTGTTTAC
CTAACCATTTCGCTGACGGGCAAAACCCTGCAGGACACCTTTCTCGAGAT
CAACTGGGGCCCGAACTGCTATGGACCACCCGAGTGGGTGGGTATCTACA
GCCAGGATCCGGCCATCTCCAACTTTCAGCCAGATCTGCGCATCAATGGT
ATTTTCAATATAACCGGCAAAATGCAGACGCCCATCAAGCTGGGCAAGCT
TCGTTTTCCCGGTGGCTGGAACAAAAAAGATAGTAGCGATCAGCCGGCAA
CGCAATATCTCAAGGGCAAGTGCCTGCCACACTATGTGGCCAGCTACAAT
GGCACCGAGCTGCTCACGGTGGATTGCCTTAAGATACAGCCCAATTGGAT
GGGCCAGATCAAGGACATCAATCGAATGGCGCTGAAGGATATCTTCCTGC
CCGGCACACATGCCTCGGCGGCCGTCTTGGGCAGCTCCAGTAAGTCCAAT
TCGATACTGGTCAGGGATTACCTGGTGGCCCAGCAGCTCGATGTTTGGTC
GCAGCTAGTCTTTGGCATACGTTATCTCGATTTAAGCATTGGATACAAGA
ACATGAACACCGAGAATGATGCCGATAATTTCTGGATAGCCAACGAGAAT
ATGCTGATTACACCGCTACTCACAGTTCTACGTGATGTTCGTCAGTTTGT
TAAAAGATCTGGCGAAGTGGTAGTCCTGGATTTTAGTATTTTCCCATCGG
CTTTTCAAGCAT

BO17753.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5895-PA 1362 CG5895-RA 1..772 17..788 3860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5895-RA 1512 CG5895-RA 86..883 17..812 3940 99.7 Plus
CG5895-RC 1415 CG5895-RC 54..786 82..812 3615 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16035731..16036291 82..642 2805 100 Plus
3L 28110227 3L 16036351..16036515 642..805 775 99.4 Plus
3L 28110227 3L 16035570..16035636 17..83 335 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:55:29 has no hits.

BO17753.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:31 Download gff for BO17753.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5895-PA 1..798 17..812 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:23 Download gff for BO17753.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 83..883 14..812 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:38 Download gff for BO17753.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 83..883 14..812 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:38 Download gff for BO17753.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16035567..16035636 14..83 98 -> Plus
3L 16035733..16036291 84..642 100 -> Plus
3L 16036352..16036523 643..812 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:23 Download gff for BO17753.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16029452..16029623 643..812 98   Plus
arm_3L 16028667..16028736 14..83 98 -> Plus
arm_3L 16028833..16029391 84..642 100 -> Plus

BO17753.complete Sequence

1393 bp assembled on 2006-10-11

GenBank Submission: FJ634202

> BO17753.complete
GAAGTTATCAGTCGACATGATAAAAGCGTATATAATTTTGGTGCCTTTGC
TGCAGTCAATTCTTTTGATTGGCTCCCTTGAAGCGGGCTGTCCTGTTTAC
CTAACCATTTCGCTGACGGGCAAAACCCTGCAGGACACCTTTCTCGAGAT
CAACTGGGGCCCGAACTGCTATGGACCACCCGAGTGGGTGGGTATCTACA
GCCAGGATCCGGCCATCTCCAACTTTCAGCCAGATCTGCGCATCAATGGT
ATTTTCAATATAACCGGCAAAATGCAGACGCCCATCAAGCTGGGCAAGCT
TCGTTTTCCCGGTGGCTGGAACAAAAAAGATAGTAGCGATCAGCCGGCAA
CGCAATATCTCAAGGGCAAGTGCCTGCCACACTATGTGGCCAGCTACAAT
GGCACCGAGCTGCTCACGGTGGATTGCCTTAAGATACAGCCCAATTGGAT
GGGCCAGATCAAGGACATCAATCGAATGGCGCTGAAGGATATCTTCCTGC
CCGGCACACATGCCTCGGCGGCCGTCTTGGGCAGCTCCAGTAAGTCCAAT
TCGATACTGGTCAGGGATTACCTGGTGGCCCAGCAGCTCGATGTTTGGTC
GCAGCTAGTCTTTGGCATACGTTATCTCGATTTAAGCATTGGATACAAGA
ACATGAACACCGAGAATGATGCCGATAATTTCTGGATAGCCAACGAGAAT
ATGCTGATTACACCGCTACTCACAGTTCTACGTGATGTTCGTCAGTTTGT
TAAAAGATCTGGCGAAGTGGTAGTCCTGGATTTTAGTAGTTTTCCCATCG
GCTTTTACAAGCATCCAGAGATCTACAGCTCGCTATTCCGGCTAATTCGC
CAGGAGCTGGGCGATGAGACCTATCGGCGTAATGTGGGCAAGGACGAAAA
CTGTGCGAATCGAAATTTCAGCGAAATACTGCTTCAAAAGAGGCATCTGG
TGATATTATTTCCCACGCAGGAGCTGCCCTATCCGGACAGAGAATCGAAC
ATGCTCTGCCCGCCGTGGCAGCGTTTTAGCACCAGCTTTATGAATATTTC
TCAAACTCTGGACTATATGCGTCTGTTGTTCAGCAGGAAGCCGGATTCTC
CAGTTCGGAATGTTGGATGGATATTCACGGCGGTGAGGAGCATGGAGCAG
ACACTGAACGCCCACCAATTGCAGACCGCCAAGGAGCGGGCGGCGGTGCT
GAATCCCAAGATAAATAAGTGGCTAAAAGGACCTTGGGGCTATAATGCCA
ATGTGGTTGCCATGGACTACTTTAGCAATACGAATATCGTGGATCTGGCC
ATTCAAGTCAATGCGCACAAGGCTTTTGTCATGGCTAACCGCGATTATGT
AAATTTGGAAATATTTAATTTGTACGCAAGCTTTCTAGACCAT

BO17753.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5895-RA 1362 CG5895-PA 1..1359 17..1375 6795 100 Plus
CG5895-RC 1107 CG5895-PC 1..1104 272..1375 5520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5895-RA 1512 CG5895-RA 86..1444 17..1375 6795 100 Plus
CG5895-RC 1415 CG5895-RC 54..1347 82..1375 6470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16035731..16036291 82..642 2805 100 Plus
3L 28110227 3L 16036775..16037159 991..1375 1925 100 Plus
3L 28110227 3L 16036351..16036701 642..992 1755 100 Plus
3L 28110227 3L 16035570..16035636 17..83 335 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:13:19 has no hits.

BO17753.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:46 Download gff for BO17753.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 1..1362 17..1378 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:25 Download gff for BO17753.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 81..1448 14..1383 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:18 Download gff for BO17753.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 86..1444 17..1377 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:46 Download gff for BO17753.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 81..1448 14..1383 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:56 Download gff for BO17753.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 86..1444 17..1377 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:56 Download gff for BO17753.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16035570..16035636 17..83 100 -> Plus
3L 16035733..16036291 84..642 100 -> Plus
3L 16036352..16036701 643..992 100 -> Plus
3L 16036777..16037159 993..1377 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:18 Download gff for BO17753.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16028670..16028736 17..83 100 -> Plus
arm_3L 16028833..16029391 84..642 100 -> Plus
arm_3L 16029452..16029801 643..992 100 -> Plus
arm_3L 16029877..16030259 993..1377 99   Plus

BO17753.pep Sequence

Translation from 16 to 1393

> BO17753.pep
MIKAYIILVPLLQSILLIGSLEAGCPVYLTISLTGKTLQDTFLEINWGPN
CYGPPEWVGIYSQDPAISNFQPDLRINGIFNITGKMQTPIKLGKLRFPGG
WNKKDSSDQPATQYLKGKCLPHYVASYNGTELLTVDCLKIQPNWMGQIKD
INRMALKDIFLPGTHASAAVLGSSSKSNSILVRDYLVAQQLDVWSQLVFG
IRYLDLSIGYKNMNTENDADNFWIANENMLITPLLTVLRDVRQFVKRSGE
VVVLDFSSFPIGFYKHPEIYSSLFRLIRQELGDETYRRNVGKDENCANRN
FSEILLQKRHLVILFPTQELPYPDRESNMLCPPWQRFSTSFMNISQTLDY
MRLLFSRKPDSPVRNVGWIFTAVRSMEQTLNAHQLQTAKERAAVLNPKIN
KWLKGPWGYNANVVAMDYFSNTNIVDLAIQVNAHKAFVMANRDYVNLEIF
NLYASFLDH

BO17753.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5895-PA 453 CG5895-PA 1..453 1..453 2392 100 Plus
CG5895-PC 368 CG5895-PC 1..368 86..453 1940 100 Plus
CG14945-PA 482 CG14945-PA 185..482 132..438 270 26 Plus
CG14945-PB 482 CG14945-PB 185..482 132..438 270 26 Plus