Clone BO17754 Report

Search the DGRC for BO17754

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptMgstl-RA
Protein status:BO17754.pep: validated full length
Sequenced Size:490

Clone Sequence Records

BO17754.5prime Sequence

488 bp (488 high quality bases) assembled on 2006-10-13

> BO17754.5prime
GAAGTTATCAGTCGACATGGCCAGCCCCGTGGAACTGCTAAGCCTCTCCA
ATCCCGTCTTCAAGAGTTTCACCTTTTGGGTCGGAGTTTTGGTGATCAAA
ATGCTGCTGATGAGCCTTCTGACAGCCATCCAGCGTTTCAAGACGAAGAC
CTTCGCCAACCCCGAGGACCTGATGTCCCCCAAGCTGAAGGTCAAGTTCG
ACGATCCGAACGTGGAGCGTGTGCGCCGTGCCCACCGCAACGACCTGGAG
AACATCCTGCCCTTCTTCGCCATCGGTCTGCTCTACGTCCTGACTGATCC
GGCCGCCTTTCTGGCCATCAACCTGTTCCGCGCCGTGGGCATCGCCCGCA
TCGTCCACACACTGGTCTACGCCGTGGTCGTGGTGCCCCAGCCTTCCCGT
GCCCTCGCCTTCTTCGTGGCCTTGGGCGCCACCGTCTACATGGCCCTGCA
GGTCATCGCCTCGGCCGCCTTCGCAAGCTTTCTAGACC

BO17754.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1742-PA 459 Mgstl-RA 1..456 17..472 2280 100 Plus
CG32510-PA 387 CG32510-RA 10..335 472..147 1630 100 Minus
CG1742-PB 456 Mgstl-RB 130..453 149..472 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
Mgstl-RA 660 CG1742-RA 101..556 17..472 2280 100 Plus
Mgstl-RC 951 CG1742-RC 524..847 149..472 1620 100 Plus
Mgstl-RB 591 CG1742-RB 164..487 149..472 1620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22226213..22226668 17..472 2040 96.5 Plus
X 23542271 X 21043678..21044003 147..472 1630 100 Plus
X 23542271 X 21043170..21043301 17..148 660 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:24:07 has no hits.

BO17754.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:33 Download gff for BO17754.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1742-PA 1..459 17..475 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:38:04 Download gff for BO17754.5prime
Subject Subject Range Query Range Percent Splice Strand
Mgstl-RA 95..561 9..478 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:52 Download gff for BO17754.5prime
Subject Subject Range Query Range Percent Splice Strand
Mgstl-RA 95..561 9..478 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:52 Download gff for BO17754.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22226207..22226673 9..478 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:38:04 Download gff for BO17754.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22226207..22226673 9..478 95   Plus

BO17754.3prime Sequence

488 bp (488 high quality bases) assembled on 2006-10-13

> BO17754.3prime
ATGGTCTAGAAAGCTTGCGAAGGCGGCCGAGGCGATGACCTGCAGGGCCA
TGTAGACGGTGGCGCCCAAGGCCACGAAGAAGGCGAGGGCACGGGAAGGC
TGGGGCACCACGACCACGGCGTAGACCAGTGTGTGGACGATGCGGGCGAT
GCCCACGGCGCGGAACAGGTTGATGGCCAGAAAGGCGGCCGGATCAGTCA
GGACGTAGAGCAGACCGATGGCGAAGAAGGGCAGGATGTTCTCCAGGTCG
TTGCGGTGGGCACGGCGCACACGCTCCACGTTCGGATCGTCGAACTTGAC
CTTCAGCTTGGGGGACATCAGGTCCTCGGGGTTGGCGAAGGTCTTCGTCT
TGAAACGCTGGATGGCTGTCAGAAGGCTCATCAGCAGCATTTTGATCACC
AAAACTCCGACCCAAAAGGTGAAACTCTTGAAGACGGGATTGGAGAGGCT
TAGCAGTTCCACGGGGCTGGCCATGTCGACTGATAACT

BO17754.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1742-PA 459 Mgstl-RA 1..456 474..19 2280 100 Minus
CG32510-PA 387 CG32510-RA 10..335 19..344 1630 100 Plus
CG1742-PB 456 Mgstl-RB 130..453 342..19 1620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
Mgstl-RA 660 CG1742-RA 101..556 474..19 2280 100 Minus
Mgstl-RC 951 CG1742-RC 524..847 342..19 1620 100 Minus
Mgstl-RB 591 CG1742-RB 164..487 342..19 1620 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22226213..22226668 474..19 2040 96.5 Minus
X 23542271 X 21043678..21044003 344..19 1630 100 Minus
X 23542271 X 21043170..21043301 474..343 660 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:54:37 has no hits.

BO17754.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:32 Download gff for BO17754.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1742-PA 1..459 16..474 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:30 Download gff for BO17754.3prime
Subject Subject Range Query Range Percent Splice Strand
Mgstl-RA 95..561 13..482 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:22 Download gff for BO17754.3prime
Subject Subject Range Query Range Percent Splice Strand
Mgstl-RA 95..561 13..482 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:22 Download gff for BO17754.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 22226207..22226674 13..482 94 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:30 Download gff for BO17754.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22226207..22226674 13..482 94 <- Minus

BO17754.complete Sequence

490 bp assembled on 2006-10-11

GenBank Submission: FJ634203

> BO17754.complete
GAAGTTATCAGTCGACATGGCCAGCCCCGTGGAACTGCTAAGCCTCTCCA
ATCCCGTCTTCAAGAGTTTCACCTTTTGGGTCGGAGTTTTGGTGATCAAA
ATGCTGCTGATGAGCCTTCTGACAGCCATCCAGCGTTTCAAGACGAAGAC
CTTCGCCAACCCCGAGGACCTGATGTCCCCCAAGCTGAAGGTCAAGTTCG
ACGATCCGAACGTGGAGCGTGTGCGCCGTGCCCACCGCAACGACCTGGAG
AACATCCTGCCCTTCTTCGCCATCGGTCTGCTCTACGTCCTGACTGATCC
GGCCGCCTTTCTGGCCATCAACCTGTTCCGCGCCGTGGGCATCGCCCGCA
TCGTCCACACACTGGTCTACGCCGTGGTCGTGGTGCCCCAGCCTTCCCGT
GCCCTCGCCTTCTTCGTGGCCTTGGGCGCCACCGTCTACATGGCCCTGCA
GGTCATCGCCTCGGCCGCCTTCGCAAGCTTTCTAGACCAT

BO17754.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Mgstl-RA 459 CG1742-PA 1..456 17..472 2280 100 Plus
Mgstl-RC 456 CG1742-PC 130..453 149..472 1620 100 Plus
Mgstl-RB 456 CG1742-PB 130..453 149..472 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
Mgstl-RA 660 CG1742-RA 101..556 17..472 2280 100 Plus
Mgstl-RC 951 CG1742-RC 524..847 149..472 1620 100 Plus
Mgstl-RB 591 CG1742-RB 164..487 149..472 1620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22226213..22226668 17..472 2040 96.5 Plus
X 23542271 X 21043678..21044003 147..472 1630 100 Plus
X 23542271 X 21043170..21043301 17..148 660 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:19:53 has no hits.

BO17754.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:47 Download gff for BO17754.complete
Subject Subject Range Query Range Percent Splice Strand
Mgstl-RA 1..459 17..475 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:35 Download gff for BO17754.complete
Subject Subject Range Query Range Percent Splice Strand
Mgstl-RA 99..554 17..474 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:03 Download gff for BO17754.complete
Subject Subject Range Query Range Percent Splice Strand
Mgstl-RA 101..556 17..474 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:47 Download gff for BO17754.complete
Subject Subject Range Query Range Percent Splice Strand
Mgstl-RA 93..559 9..478 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:35 Download gff for BO17754.complete
Subject Subject Range Query Range Percent Splice Strand
Mgstl-RA 101..556 17..474 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:35 Download gff for BO17754.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22226213..22226668 17..474 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:03 Download gff for BO17754.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22226213..22226668 17..474 96   Plus

BO17754.pep Sequence

Translation from 16 to 490

> BO17754.pep
MASPVELLSLSNPVFKSFTFWVGVLVIKMLLMSLLTAIQRFKTKTFANPE
DLMSPKLKVKFDDPNVERVRRAHRNDLENILPFFAIGLLYVLTDPAAFLA
INLFRAVGIARIVHTLVYAVVVVPQPSRALAFFVALGATVYMALQVIASA
AFASFLDH

BO17754.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
Mgstl-PA 152 CG1742-PA 1..152 1..152 749 100 Plus
Mgstl-PC 151 CG1742-PC 5..151 6..152 614 83 Plus
Mgstl-PB 151 CG1742-PB 5..151 6..152 614 83 Plus
CG33178-PC 165 CG33178-PC 12..157 1..146 446 61 Plus
CG33178-PA 165 CG33178-PA 12..157 1..146 446 61 Plus