Clone Sequence Records
BO17754.5prime Sequence
488 bp (488 high quality bases) assembled on 2006-10-13
> BO17754.5prime
GAAGTTATCAGTCGACATGGCCAGCCCCGTGGAACTGCTAAGCCTCTCCA
ATCCCGTCTTCAAGAGTTTCACCTTTTGGGTCGGAGTTTTGGTGATCAAA
ATGCTGCTGATGAGCCTTCTGACAGCCATCCAGCGTTTCAAGACGAAGAC
CTTCGCCAACCCCGAGGACCTGATGTCCCCCAAGCTGAAGGTCAAGTTCG
ACGATCCGAACGTGGAGCGTGTGCGCCGTGCCCACCGCAACGACCTGGAG
AACATCCTGCCCTTCTTCGCCATCGGTCTGCTCTACGTCCTGACTGATCC
GGCCGCCTTTCTGGCCATCAACCTGTTCCGCGCCGTGGGCATCGCCCGCA
TCGTCCACACACTGGTCTACGCCGTGGTCGTGGTGCCCCAGCCTTCCCGT
GCCCTCGCCTTCTTCGTGGCCTTGGGCGCCACCGTCTACATGGCCCTGCA
GGTCATCGCCTCGGCCGCCTTCGCAAGCTTTCTAGACC
BO17754.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1742-PA | 459 | Mgstl-RA | 1..456 | 17..472 | 2280 | 100 | Plus |
CG32510-PA | 387 | CG32510-RA | 10..335 | 472..147 | 1630 | 100 | Minus |
CG1742-PB | 456 | Mgstl-RB | 130..453 | 149..472 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mgstl-RA | 660 | CG1742-RA | 101..556 | 17..472 | 2280 | 100 | Plus |
Mgstl-RC | 951 | CG1742-RC | 524..847 | 149..472 | 1620 | 100 | Plus |
Mgstl-RB | 591 | CG1742-RB | 164..487 | 149..472 | 1620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22226213..22226668 | 17..472 | 2040 | 96.5 | Plus |
X | 23542271 | X | 21043678..21044003 | 147..472 | 1630 | 100 | Plus |
X | 23542271 | X | 21043170..21043301 | 17..148 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:24:07 has no hits.
BO17754.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:33 Download gff for
BO17754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1742-PA | 1..459 | 17..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:38:04 Download gff for
BO17754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgstl-RA | 95..561 | 9..478 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:52 Download gff for
BO17754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgstl-RA | 95..561 | 9..478 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:52 Download gff for
BO17754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22226207..22226673 | 9..478 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:38:04 Download gff for
BO17754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22226207..22226673 | 9..478 | 95 | | Plus |
BO17754.3prime Sequence
488 bp (488 high quality bases) assembled on 2006-10-13
> BO17754.3prime
ATGGTCTAGAAAGCTTGCGAAGGCGGCCGAGGCGATGACCTGCAGGGCCA
TGTAGACGGTGGCGCCCAAGGCCACGAAGAAGGCGAGGGCACGGGAAGGC
TGGGGCACCACGACCACGGCGTAGACCAGTGTGTGGACGATGCGGGCGAT
GCCCACGGCGCGGAACAGGTTGATGGCCAGAAAGGCGGCCGGATCAGTCA
GGACGTAGAGCAGACCGATGGCGAAGAAGGGCAGGATGTTCTCCAGGTCG
TTGCGGTGGGCACGGCGCACACGCTCCACGTTCGGATCGTCGAACTTGAC
CTTCAGCTTGGGGGACATCAGGTCCTCGGGGTTGGCGAAGGTCTTCGTCT
TGAAACGCTGGATGGCTGTCAGAAGGCTCATCAGCAGCATTTTGATCACC
AAAACTCCGACCCAAAAGGTGAAACTCTTGAAGACGGGATTGGAGAGGCT
TAGCAGTTCCACGGGGCTGGCCATGTCGACTGATAACT
BO17754.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1742-PA | 459 | Mgstl-RA | 1..456 | 474..19 | 2280 | 100 | Minus |
CG32510-PA | 387 | CG32510-RA | 10..335 | 19..344 | 1630 | 100 | Plus |
CG1742-PB | 456 | Mgstl-RB | 130..453 | 342..19 | 1620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:54:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mgstl-RA | 660 | CG1742-RA | 101..556 | 474..19 | 2280 | 100 | Minus |
Mgstl-RC | 951 | CG1742-RC | 524..847 | 342..19 | 1620 | 100 | Minus |
Mgstl-RB | 591 | CG1742-RB | 164..487 | 342..19 | 1620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:54:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22226213..22226668 | 474..19 | 2040 | 96.5 | Minus |
X | 23542271 | X | 21043678..21044003 | 344..19 | 1630 | 100 | Minus |
X | 23542271 | X | 21043170..21043301 | 474..343 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:54:37 has no hits.
BO17754.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:32 Download gff for
BO17754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1742-PA | 1..459 | 16..474 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:30 Download gff for
BO17754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgstl-RA | 95..561 | 13..482 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:22 Download gff for
BO17754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgstl-RA | 95..561 | 13..482 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:22 Download gff for
BO17754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22226207..22226674 | 13..482 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:30 Download gff for
BO17754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22226207..22226674 | 13..482 | 94 | <- | Minus |
BO17754.complete Sequence
490 bp assembled on 2006-10-11
GenBank Submission: FJ634203
> BO17754.complete
GAAGTTATCAGTCGACATGGCCAGCCCCGTGGAACTGCTAAGCCTCTCCA
ATCCCGTCTTCAAGAGTTTCACCTTTTGGGTCGGAGTTTTGGTGATCAAA
ATGCTGCTGATGAGCCTTCTGACAGCCATCCAGCGTTTCAAGACGAAGAC
CTTCGCCAACCCCGAGGACCTGATGTCCCCCAAGCTGAAGGTCAAGTTCG
ACGATCCGAACGTGGAGCGTGTGCGCCGTGCCCACCGCAACGACCTGGAG
AACATCCTGCCCTTCTTCGCCATCGGTCTGCTCTACGTCCTGACTGATCC
GGCCGCCTTTCTGGCCATCAACCTGTTCCGCGCCGTGGGCATCGCCCGCA
TCGTCCACACACTGGTCTACGCCGTGGTCGTGGTGCCCCAGCCTTCCCGT
GCCCTCGCCTTCTTCGTGGCCTTGGGCGCCACCGTCTACATGGCCCTGCA
GGTCATCGCCTCGGCCGCCTTCGCAAGCTTTCTAGACCAT
BO17754.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mgstl-RA | 459 | CG1742-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
Mgstl-RC | 456 | CG1742-PC | 130..453 | 149..472 | 1620 | 100 | Plus |
Mgstl-RB | 456 | CG1742-PB | 130..453 | 149..472 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:19:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mgstl-RA | 660 | CG1742-RA | 101..556 | 17..472 | 2280 | 100 | Plus |
Mgstl-RC | 951 | CG1742-RC | 524..847 | 149..472 | 1620 | 100 | Plus |
Mgstl-RB | 591 | CG1742-RB | 164..487 | 149..472 | 1620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22226213..22226668 | 17..472 | 2040 | 96.5 | Plus |
X | 23542271 | X | 21043678..21044003 | 147..472 | 1630 | 100 | Plus |
X | 23542271 | X | 21043170..21043301 | 17..148 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:19:53 has no hits.
BO17754.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:47 Download gff for
BO17754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgstl-RA | 1..459 | 17..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:35 Download gff for
BO17754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgstl-RA | 99..554 | 17..474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:03 Download gff for
BO17754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgstl-RA | 101..556 | 17..474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:47 Download gff for
BO17754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgstl-RA | 93..559 | 9..478 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:35 Download gff for
BO17754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgstl-RA | 101..556 | 17..474 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:35 Download gff for
BO17754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22226213..22226668 | 17..474 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:03 Download gff for
BO17754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22226213..22226668 | 17..474 | 96 | | Plus |
BO17754.pep Sequence
Translation from 16 to 490
> BO17754.pep
MASPVELLSLSNPVFKSFTFWVGVLVIKMLLMSLLTAIQRFKTKTFANPE
DLMSPKLKVKFDDPNVERVRRAHRNDLENILPFFAIGLLYVLTDPAAFLA
INLFRAVGIARIVHTLVYAVVVVPQPSRALAFFVALGATVYMALQVIASA
AFASFLDH
BO17754.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mgstl-PA | 152 | CG1742-PA | 1..152 | 1..152 | 749 | 100 | Plus |
Mgstl-PC | 151 | CG1742-PC | 5..151 | 6..152 | 614 | 83 | Plus |
Mgstl-PB | 151 | CG1742-PB | 5..151 | 6..152 | 614 | 83 | Plus |
CG33178-PC | 165 | CG33178-PC | 12..157 | 1..146 | 446 | 61 | Plus |
CG33178-PA | 165 | CG33178-PA | 12..157 | 1..146 | 446 | 61 | Plus |