Clone BO17757 Report

Search the DGRC for BO17757

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:57
Vector:pDNR-Dual
Associated Gene/Transcripttara-RA
Protein status:BO17757.pep: validated full length
Sequenced Size:2782

Clone Sequence Records

BO17757.5prime Sequence

690 bp (570 high quality bases) assembled on 2006-10-13

> BO17757.5prime
GAAGTTATCAGTCGACATGAAAATGTGGACGGAATCCAATGTGAATTCCG
CGATGGGTCTTCAAGCAACAGCCGCCACCAAGCGGAAGCATGAGCTGACC
TTCGACAGCAAGGATGCCAACACCACCTACACGGGCAACTGTGCCCCGCC
CCCCGTCAAGGCCAACAAGTGGGCCATCAGCAACAACAACTACCTGGAGT
CGCTCGAGGAGCAGCAGCAGCAACAGCAATCGCCATCGGAGCCAGCTGTT
GAGTCCAACAACAACCACATTGTTTTAGAAGCATCAATGGATGCGTTGAA
GCCAACGGAGCCAAGTATTAGCAATGGTCATGAAGTTACTACCGCCGTCG
CAGCAATGAAAAGTCAAGCGGAGGTGCCACTCCCGCCAACAGCGAGTGCG
GCGATACCGGAGGACAGTATCGCCAGGTTAGAGGTGGTCACCTCAGCCGT
TCCTTGTGAGCCCTGGACGAGCAATGGGCCCACTACTCCTTCCGCGGTGG
CAGGACCCGCAGCATCCGCGGAACCTGTGGATTGCATCTCCAAGCTGCAG
GCCGTCGCGGTGCCCAGTGATCCTTGGGGTAGCATTGCCACCCGCTCCAC
TCTGGCAACGACTTTGCTCAGTGCCGATGAGCTGGACGACGATGATGATG
ATTTTGAGGACGACTACGAAGAGGAGGAAAGCATCATACC

BO17757.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6889-PA 2751 tara-RA 1..674 17..690 3320 99.7 Plus
CG6889-PB 2739 tara-RB 13..662 41..690 3200 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
tara-RA 4341 CG6889-RA 765..1439 16..690 3345 99.7 Plus
tara-RB 4066 CG6889-RB 515..1164 41..690 3220 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16256778..16257427 41..690 3220 99.7 Plus
Blast to na_te.dros performed 2015-02-11 22:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2431 162..269 160 64.3 Plus
roo 9092 roo DM_ROO 9092bp 1086..1123 207..244 109 76.3 Plus

BO17757.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:34 Download gff for BO17757.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6889-PA 1..674 17..690 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:02:07 Download gff for BO17757.5prime
Subject Subject Range Query Range Percent Splice Strand
tara-RA 759..1441 9..690 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:12 Download gff for BO17757.5prime
Subject Subject Range Query Range Percent Splice Strand
tara-RA 757..1439 9..690 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:12 Download gff for BO17757.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16256778..16257427 41..690 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:02:07 Download gff for BO17757.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12082500..12083149 41..690 99   Plus

BO17757.3prime Sequence

641 bp (578 high quality bases) assembled on 2006-10-13

> BO17757.3prime
ATGGTCTAGAAAGCTTGCACTACCGACCATGATGTGGGCCGGGTGCTCCA
GTTCGTTGTCGTGCAGGCGGGAGGCGGTCACAACCTGACCGCCCAATCCG
CTCTTGAACAGATCCTCGGAGCTGAGCTTACAGCTGGGTACCAGCTCCGT
GAACTCCGAACCGAGTCCGAATTCCATGTCCAGGAATCCGTACTCCCAGG
TATTGGCGCCCGCCGACACATTGGAGCTAATGCTGCTTACATACGACGAG
GTCAGCGAGTGGGTGGCCGAGGAGATGGTCGACAGGGTGGTGAATGTGGC
GGTGGTGGAGCTGCTTCCGCAGGAACTGCTACTGCCGCCGCTGGCTTGTA
CGGTGGTGAAGCTTCCACTGAATGCCAGCGTGGACCCCGAGGAGGAACTG
GAACTACTGGCTGGCACTGAAACTGGCACCGCTGTAGGTGTGGCCGCCGA
CGGAAGTATGCTAAACAAATCGTTGTTGTTGAGCGGATCCAACGCCGATT
GCGAACTGAGGCTCAGCACCGAACTCCAGTTGATGGATCGCGTGGAGTCG
TCGTCCGCATAACCCGAATCGCTAGTATCGCAGTTGCTGCTGCTTGCGGT
AGGTGCAACTGGCGTGGTGCCGTTGCTGCTCACGGTATTCC

BO17757.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6889-PA 2751 tara-RA 2126..2748 641..19 3115 100 Minus
CG6889-PB 2739 tara-RB 2114..2736 641..19 3115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
tara-RB 4066 CG6889-RB 2616..3238 641..19 3115 100 Minus
tara-RA 4341 CG6889-RA 2891..3513 641..19 3115 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16258879..16259501 641..19 3115 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:48:45 has no hits.

BO17757.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:33 Download gff for BO17757.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6889-PB 2114..2739 18..641 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:14:25 Download gff for BO17757.3prime
Subject Subject Range Query Range Percent Splice Strand
tara-RA 2893..3515 19..641 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:12 Download gff for BO17757.3prime
Subject Subject Range Query Range Percent Splice Strand
tara-RA 2891..3513 19..641 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:12 Download gff for BO17757.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16258879..16259501 19..641 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:14:25 Download gff for BO17757.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12084601..12085223 19..641 100   Minus

BO17757.complete Sequence

2782 bp assembled on 2007-03-23

GenBank Submission: FJ634204

> BO17757.complete
GAAGTTATCAGTCGACATGAAAATGTGGACGGAATCCAATGTGAATTCCG
CGATGGGTCTTCAAGCAACAGCCGCCACCAAGCGGAAGCATGAGCTGACC
TTCGACAGCAAGGATGCCAACACCACCTACACGGGCAACTGTGCCCCGCC
CCCCGTCAAGGCCAACAAGTGGGCCATCAGCAACAACAACTACCTGGAGT
CGCTCGAGGAGCAGCAGCAGCAACAGCAATCGCCATCGGAGCCAGCTGTT
GAGTCCAACAACAACCACATTGTTTTAGAAGCATCAATGGATGCGTTGAA
GCCAACGGAGCCAAGTATTAGCAATGGTCATGAAGTTACTACCGCCGTCG
CAGCAATGAAAAGTCAAGCGGAGGTGCCACTCCCGCCAACAGCGAGTGCG
GCGATACCGGAGGACAGTATCGCCAGGTTAGAGGTGGTCACCTCAGCCGT
TCCTTGTGAGCCCTGGACGAGCAATGGGCCCACTACTCCTTCCGCGGTGG
CAGGACCCGCAGCATCCGCGGAACCTGTGGATTGCATCTCCAAGCTGCAG
GCCGTCGCGGTGCCCAGTGATCCTTGGGGTAGCATTGCCACCCGCTCCAC
TCTGGCAACGACTTTGCTCAGTGCCGATGAGCTGGACGACGATGATGATG
ATTTTGAGGACGACTACGAGGAGGAGGAGAGCATCATACCCACCTACTGT
CCCATGCGCTATCATCCCTTTGTACCGCATCCGCACCCTCATTCGCACCA
GCTGCCGTCCCATCCCCACCAGCAGCAGCCGCAGCAGCTCTCCCAACAAC
AACCACATCCCCAGCAGCAGCAACTCGCCCAGCAGCAGCAACAACATCCG
CAGCAGCAGCGAAGCTATGCCCCCGGATATGGGAGCAGGCAACCCAACTA
CTATTCGGAGCCTTTCCCGCAGCAGAATTGCTCGCGGACAGGAGGACCGC
AGCACATGACGCAATCACCGCCAACACCGCAGCAGGCGCGTGGTTTCGCT
CCACCCCAGTGGGCGACAGCGGGTAGCAGTCCGGCCAATCCCTCATCGGG
AGCCCAACAGTTCTACGAGCCGACCAACGGTGGAGCTTATGCCCCGCCAG
CGGCGCCCCAGCAGACAATTCGTTGTGCAGAGAACGGCAAATCCTATCTG
GACCTGGGCTGCAGCAGTGGCGCATCCGGAAATGCTGGAGGATCGCCCAT
CAGTCCGCCGCCCTCATCAGCGCCTGTTGTTCCATTCGCCGGCTTGCCTC
TCCATGGCCTGCCTCTTAAAAGGTGCTGCGATGGACGACCCGGTGGCTGG
TGCAGTGCCAACAGGAGTTGCTACAAGGACACGCGCCTGAAGATACGCAA
TCTGTCCATGTTCAAACTCTCCCGTTTCCGGCAGGTTTCTGAGCAGTCGC
TGTACCGCTCGGTGCTCATTTGCAATACGCTGAAGCGCATTGATCGGGAG
ATCGAAGCAGAGGCCAAGGAGCTGCACCAGGCGGCGCAACAGCACCACCA
ACAGGCGGCAGCAGCAGCAGCCGCAGCAGCAGCAGCGGCGGCACAAGCGG
CTCAGTACCACCCAGCCTACCAGCAGCAGCAGCAGCAGCAGCAATCCCCG
CCAGCACCTCTGCATCCACATACGCAGCAGCAGATGGACTATGCGCCCGT
GTTGAACTGTGCTCGTTTGGCCAACATGGATCACTACCAGCAACTCAGTT
TCCAGCCCCAACACCAGCAGCAACAGCAGCCTTCGCAGCCGCATAGCTAC
CACGAGCGTCTGGACAGCCAACCCGCCTACAGGGGCGCGGCAGCGGGTGC
GGGCAGCTTCGCCACGCAGCCGAGCAACTGTGATACATCAGCGGGTGCAA
GTAGCAGCAATACCAGCGGCAACAGCAACAACTCCTCAGCGACGGCGGCG
AGCAGCAACAGTAGTTTGCACCCCTACGATCACTATCCCTTTCGGGAGTC
GCAATCTGGTCGAGCAACGCCCTTTCCGGCCTGCCCCACCACAACAGCAG
CAGCGGCAGCAGCTTCGGCAGCAGCCGCAGCTTCCAGTGGAGGAGCAGCA
ACAACACTAAGTAGCAACATCAGCAGCTCCCCCGCATCAAGCAGCACTAG
CAGCAACACCACTTCCTCAACGGTGATCAGCAGCAGTAGTGGGAATACCG
TGAGCAGCAACGGCACCACGCCAGTTGCACCTACCGCAAGCAGCAGCAAC
TGCGATACTAGCGATTCGGGTTATGCGGACGACGACTCCACGCGATCCAT
CAACTGGAGTTCGGTGCTGAGCCTCAGTTCGCAATCGGCGTTGGATCCGC
TCAACAACAACGATTTGTTTAGCATACTTCCGTCGGCGGCCACACCTACA
GCGGTGCCAGTTTCAGTGCCAGCCAGTAGTTCCAGTTCCTCCTCGGGGTC
CACGCTGGCATTCAGTGGAAGCTTCACCACCGTACAAGCCAGCGGCGGCA
GTAGCAGTTCCTGCGGAAGCAGCTCCACCACCGCCACATTCACCACCCTG
TCGACCATCTCCTCGGCCACCCACTCGCTGACCTCGTCGTATGTAAGCAG
CATTAGCTCCAATGTGTCGGCGGGCGCCAATACCTGGGAGTACGGATTCC
TGGACATGGAATTCGGACTCGGTTCGGAGTTCACGGAGCTGGTACCCAGC
TGTAAGCTCAGCTCCGAGGATCTGTTCAAGAGCGGATTGGGCGGTCAGGT
TGTGACCGCCTCCCGCCTGCACGACAACGAACTGGAGCACCCGGCCCACA
TCATGGTCGGTAGTGCAAGCTTTCTAGACCAT

BO17757.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
tara-RA 2751 CG6889-PA 1..2748 17..2764 13740 100 Plus
tara-RB 2739 CG6889-PB 13..2736 41..2764 13620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
tara-RA 4341 CG6889-RA 765..3513 16..2764 13745 100 Plus
tara-RB 4066 CG6889-RB 515..3238 41..2764 13620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16256778..16259501 41..2764 13620 100 Plus
Blast to na_te.dros performed 2014-11-28 08:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2292..3014 1460..2217 381 56 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2401..2982 1470..2077 377 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2552 1981..2216 322 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6749..6926 1989..2170 298 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2664 1850..2200 293 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..7112 1703..2107 243 57.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6995 1846..2121 240 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6872 2060..2212 226 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2685 1703..2095 218 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6730..7007 1835..2107 208 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..7028 1803..2121 202 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2352..2665 1836..2168 189 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2421 2090..2200 166 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6823 1524..1633 161 66.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6798..6866 1850..1915 157 73.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6795..7008 1680..1883 150 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..7217 1672..2123 141 55 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1527..1584 1672..1730 130 71.2 Plus
roo 9092 roo DM_ROO 9092bp 1087..1142 1678..1730 128 75 Plus

BO17757.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:13 Download gff for BO17757.complete
Subject Subject Range Query Range Percent Splice Strand
tara-RA 1..2751 17..2765 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:20 Download gff for BO17757.complete
Subject Subject Range Query Range Percent Splice Strand
tara-RA 768..3515 17..2766 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:11 Download gff for BO17757.complete
Subject Subject Range Query Range Percent Splice Strand
tara-RA 768..3515 17..2766 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:13 Download gff for BO17757.complete
Subject Subject Range Query Range Percent Splice Strand
tara-RA 759..3515 9..2764 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:57 Download gff for BO17757.complete
Subject Subject Range Query Range Percent Splice Strand
tara-RA 766..3513 17..2766 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:57 Download gff for BO17757.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16226416..16226439 17..40 100 -> Plus
3R 16256778..16259501 41..2766 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:11 Download gff for BO17757.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12052138..12052161 17..40 100 -> Plus
arm_3R 12082500..12085223 41..2766 99   Plus

BO17757.pep Sequence

Translation from 16 to 2782

> BO17757.pep
MKMWTESNVNSAMGLQATAATKRKHELTFDSKDANTTYTGNCAPPPVKAN
KWAISNNNYLESLEEQQQQQQSPSEPAVESNNNHIVLEASMDALKPTEPS
ISNGHEVTTAVAAMKSQAEVPLPPTASAAIPEDSIARLEVVTSAVPCEPW
TSNGPTTPSAVAGPAASAEPVDCISKLQAVAVPSDPWGSIATRSTLATTL
LSADELDDDDDDFEDDYEEEESIIPTYCPMRYHPFVPHPHPHSHQLPSHP
HQQQPQQLSQQQPHPQQQQLAQQQQQHPQQQRSYAPGYGSRQPNYYSEPF
PQQNCSRTGGPQHMTQSPPTPQQARGFAPPQWATAGSSPANPSSGAQQFY
EPTNGGAYAPPAAPQQTIRCAENGKSYLDLGCSSGASGNAGGSPISPPPS
SAPVVPFAGLPLHGLPLKRCCDGRPGGWCSANRSCYKDTRLKIRNLSMFK
LSRFRQVSEQSLYRSVLICNTLKRIDREIEAEAKELHQAAQQHHQQAAAA
AAAAAAAAAQAAQYHPAYQQQQQQQQSPPAPLHPHTQQQMDYAPVLNCAR
LANMDHYQQLSFQPQHQQQQQPSQPHSYHERLDSQPAYRGAAAGAGSFAT
QPSNCDTSAGASSSNTSGNSNNSSATAASSNSSLHPYDHYPFRESQSGRA
TPFPACPTTTAAAAAASAAAAASSGGAATTLSSNISSSPASSSTSSNTTS
STVISSSSGNTVSSNGTTPVAPTASSSNCDTSDSGYADDDSTRSINWSSV
LSLSSQSALDPLNNNDLFSILPSAATPTAVPVSVPASSSSSSSGSTLAFS
GSFTTVQASGGSSSSCGSSSTTATFTTLSTISSATHSLTSSYVSSISSNV
SAGANTWEYGFLDMEFGLGSEFTELVPSCKLSSEDLFKSGLGGQVVTASR
LHDNELEHPAHIMVGSASFLDH

BO17757.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
tara-PA 916 CG6889-PA 1..916 1..916 4782 100 Plus
tara-PB 912 CG6889-PB 3..912 7..916 4737 99.8 Plus
Mur29B-PA 555 CG31901-PA 212..475 591..856 215 30.3 Plus
cpo-PY 606 CG43738-PY 189..416 480..706 213 30.2 Plus
cpo-PX 606 CG43738-PX 189..416 480..706 213 30.2 Plus
Mur29B-PA 555 CG31901-PA 156..469 583..883 210 27.6 Plus
Mur29B-PA 555 CG31901-PA 148..410 591..856 209 28.1 Plus
Mur29B-PA 555 CG31901-PA 116..378 591..856 208 28.4 Plus
Mur29B-PA 555 CG31901-PA 92..346 599..856 198 27.9 Plus
cpo-PY 606 CG43738-PY 158..440 487..740 197 27.3 Plus
Mur29B-PA 555 CG31901-PA 90..309 606..848 190 30.5 Plus
Mur29B-PA 555 CG31901-PA 87..282 658..856 188 31.5 Plus
Mur29B-PA 555 CG31901-PA 108..356 607..856 188 27.4 Plus
Mur29B-PA 555 CG31901-PA 242..485 591..838 179 26.8 Plus