Clone Sequence Records
BO17759.3prime Sequence
832 bp (708 high quality bases) assembled on 2006-10-13
> BO17759.3prime
ATGGTCTAGAAAGCTTGCGTGGTCCAAGATGCGCATATTGCCAGATACAA
TCTTGTTCTCCAGAATGGCTCCAGCTGGGATATCGATACGATCGCCATGG
TTAGCAATGATGATCACAGTGCCGCGCAAAGAAACGCCACGACCGAAAGT
CACATCTCCGCTCACGGTCAAGTGATCCAGCTCAATGATGTCCGGGATGT
TGGCAAAGCGACCCAGGAACTCCTTGACCTTCGAGAAGTGGTTCTCTCCC
AGCTTGACGAGCGGCGTGGTAGGGAACATTCGCTGTGGCGACATTACCAG
GCTGCCGTTCTTAAGCGTATATAAATTTGACATGACCAGCAGCAGATCTG
AAGATTTCTTCACGGGCAAGAAACGGGAACGCGGCACATTGATGCCGATG
GCGCCATCAAAGCACTTCATGGCCGCACCCACAGCAGTCTCCAGCTGAAT
GACACGGGTTCCGTTCTCCAGCGTCTTGTTGTTCACAATAATTTCCATGT
TTAAGGTACGCTCACGCAAAACGCGATCAATGGCTGCCAGGTTGGCCCAA
ATGTTGTTGGTGTTAAAGAACTTGAAGGTCTTAACCGACTTAAAGTCATC
CACATGCTCTGGTGGCACTTGAGCAATTTCCAACAGGCGCAGCTTGTTTT
CCATTTGAATGAGAGTACCACCCTTAACGTCAGCACGGGTCTTGTCGGTG
ACCTCCATGACAAACTCCACTGGAGTAGTGGCCCGCTCCTCGCCCACCAG
CTTATTGAGGATGTTCAGATCGACGGTGGCGCCCCAGTTATCGATGTTGG
AAAAGAAACAATACTCGCGGCCCTCCTCGATG
BO17759.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4347-PC | 1542 | UGP-RC | 726..1539 | 832..19 | 3995 | 99.6 | Minus |
| CG4347-PA | 1563 | UGP-RA | 747..1560 | 832..19 | 3995 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RE | 2686 | CG4347-RE | 994..1807 | 832..19 | 4025 | 99.6 | Minus |
| UGP-RD | 2093 | CG4347-RD | 1014..1827 | 832..19 | 4025 | 99.6 | Minus |
| UGP-RA | 2102 | CG4347-RA | 1000..1813 | 832..19 | 4025 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:45:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9351917..9352329 | 123..535 | 2065 | 100 | Plus |
| 3L | 28110227 | 3L | 9352601..9352761 | 672..832 | 760 | 98.1 | Plus |
| 3L | 28110227 | 3L | 9352405..9352545 | 534..674 | 705 | 100 | Plus |
| 3L | 28110227 | 3L | 9351746..9351850 | 19..123 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:45:04 has no hits.
BO17759.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:35 Download gff for
BO17759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4347-PA | 747..1563 | 15..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:02:58 Download gff for
BO17759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RA | 1000..1816 | 15..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:58:10 Download gff for
BO17759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RA | 1000..1816 | 15..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:58:10 Download gff for
BO17759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9351742..9351850 | 15..123 | 98 | <- | Plus |
| 3L | 9351918..9352327 | 124..533 | 100 | <- | Plus |
| 3L | 9352405..9352543 | 534..672 | 100 | <- | Plus |
| 3L | 9352602..9352761 | 673..832 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:02:58 Download gff for
BO17759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9344842..9344950 | 15..123 | 98 | <- | Plus |
| arm_3L | 9345018..9345427 | 124..533 | 100 | <- | Plus |
| arm_3L | 9345505..9345643 | 534..672 | 100 | <- | Plus |
| arm_3L | 9345702..9345861 | 673..832 | 98 | | Plus |
BO17759.5prime Sequence
791 bp (687 high quality bases) assembled on 2006-10-13
> BO17759.5prime
GAAGTTATCAGTCGACATGCTGGATGTTCCACATGAAGCTAAGGTGCGCG
GCCACCAGCGTGCACCGTCCGACTCCAAGGAGTTCCATGAGGTGACCAAA
CGGGATGCACTTCGTCTGCTGGAGCACGATGTGGACCGTCTGCTGGAGAC
CACTGAGAAGGCCCGCCAGCCTGCCCTCAAGGCAGAAATGGGTCGTTTCG
CCGATCTGTTCGGACGTTTCATTCAGGAAGAGGGTCCCGCATTGGACTGG
AACAAGATTCAGAAGCTGCCTGAGAATGCTGTGATGAACTACTCGAATCT
TAAGTCGCCCAAGAACGAGCAGAATGAGATCCGCAACATGTTGGATAAAT
TGGTGGTCATCAAGCTGAACGGTGGTTTGGGCACCTCAATGGGTTGCCAT
GGTCCCAAGAGTGTGATTCCTGTGCGTTCGGATCTTACTTTCCTGGATCT
GACCGTGCAGCAAATCGAGCATCTCAACAAGACCTACGATGCCAATGTTC
CGCTGGTACTGATGAACTCCTTTAACACCGACGAGGATACCGAGAAGATC
GTGCGCAAGTACAAAGGATTCCGTGTGCAGATCCACACCTTCAACCAGAG
CTGCTTCCCGCGCATTAGTCGCGAGCACTACCTGCCGGTGGCCAAAGACT
TTGATGTCGAAAAGGATATGGAAGCCTGGTATCCACCTGGACACGGTGAC
TTCTACGATACCTTCCGCAACTCTGGCCTGCTGAAGAAGTTCATCGAGGA
GGGCCGCGAGTATTGTTTCTTGTCCAACATCGAATACCTGG
BO17759.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4347-PC | 1542 | UGP-RC | 1..767 | 17..783 | 3835 | 100 | Plus |
| CG4347-PA | 1563 | UGP-RA | 49..788 | 44..783 | 3700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:10:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RC | 2099 | CG4347-RC | 295..1069 | 17..791 | 3845 | 99.7 | Plus |
| UGP-RD | 2093 | CG4347-RD | 295..1063 | 17..791 | 3745 | 99 | Plus |
| UGP-RA | 2102 | CG4347-RA | 302..1049 | 44..791 | 3710 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9352882..9353230 | 675..327 | 1745 | 100 | Minus |
| 3L | 28110227 | 3L | 9353888..9354076 | 230..42 | 945 | 100 | Minus |
| 3L | 28110227 | 3L | 9352712..9352827 | 791..676 | 550 | 98.3 | Minus |
| 3L | 28110227 | 3L | 9353738..9353831 | 322..229 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:10:10 has no hits.
BO17759.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:36 Download gff for
BO17759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4347-PC | 1..775 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:11:02 Download gff for
BO17759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RC | 290..1069 | 12..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:12 Download gff for
BO17759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RC | 290..1069 | 12..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:12 Download gff for
BO17759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9353729..9353829 | 231..328 | 96 | <- | Minus |
| 3L | 9353888..9354074 | 44..230 | 100 | <- | Minus |
| 3L | 9358615..9358646 | 12..43 | 93 | | Minus |
| 3L | 9352712..9352827 | 676..791 | 98 | <- | Minus |
| 3L | 9352882..9353228 | 329..675 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:11:02 Download gff for
BO17759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9345812..9345927 | 676..791 | 98 | <- | Minus |
| arm_3L | 9345982..9346328 | 329..675 | 100 | <- | Minus |
| arm_3L | 9346829..9346929 | 231..328 | 96 | <- | Minus |
| arm_3L | 9346988..9347174 | 44..230 | 100 | <- | Minus |
| arm_3L | 9351715..9351746 | 12..43 | 93 | | Minus |
BO17759.complete Sequence
1573 bp assembled on 2007-10-05
GenBank Submission: FJ634205
> BO17759.complete
GAAGTTATCAGTCGACATGCTGGATGTTCCACATGAAGCTAAGGTGCGCG
GCCACCAGCGTGCACCGTCCGACTCCAAGGAGTTCCATGAGGTGACCAAA
CGGGATGCACTTCGTCTGCTGGAGCACGATGTGGACCGTCTGCTGGAGAC
CACTGAGAAGGCCCGCCAGCCTGCCCTCAAGGCAGAAATGGGTCGTTTCG
CCGATCTGTTCGGACGTTTCATTCAGGAAGAGGGTCCCGCATTGGACTGG
AACAAGATTCAGAAGCTGCCTGAGAATGCTGTGATGAACTACTCGAATCT
TAAGTCGCCCAAGAACGAGCAGAATGAGATCCGCAACATGTTGGATAAAT
TGGTGGTCATCAAGCTGAACGGTGGTTTGGGCACCTCAATGGGTTGCCAT
GGTCCCAAGAGTGTGATTCCTGTGCGTTCGGATCTTACTTTCCTGGATCT
GACCGTGCAGCAAATCGAGCATCTCAACAAGACCTACGATGCCAATGTTC
CGCTGGTACTGATGAACTCCTTTAACACCGACGAGGATACCGAGAAGATC
GTGCGCAAGTACAAAGGATTCCGTGTGCAGATCCACACCTTCAACCAGAG
CTGCTTCCCGCGCATTAGTCGCGAGCACTACCTGCCGGTGGCCAAAGACT
TTGATGTCGAAAAGGATATGGAAGCCTGGTATCCACCTGGACACGGTGAC
TTCTACGATACCTTCCGCAACTCTGGCCTGCTGAAGAAGTTCATCGAGGA
GGGCCGCGAGTATTGTTTCTTGTCCAACATCGATAACCTGGGCGCCACCG
TCGATCTGAACATCCTCAATAAGCTGGTGGGCGAGGAGCGGGCCACTACT
CCAGTGGAGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGACGTTAA
GGGTGGTACTCTCATTCAAATGGAAAACAAGCTGCGCCTGTTGGAAATTG
CTCAAGTGCCACCAGAGCATGTGGATGACTTTAAGTCGGTTAAGACCTTC
AAGTTCTTTAACACCAACAACATTTGGGCCAACCTGGCAGCCATTGATCG
CGTTTTGCGTGAGCGTACCTTAAACATGGAAATTATTGTGAACAACAAGA
CGCTGGAGAACGGAACCCGTGTCATTCAGCTGGAGACTGCTGTGGGTGCG
GCCATGAAGTGCTTTGATGGCGCCATCGGCATCAATGTGCCGCGTTCCCG
TTTCTTGCCCGTGAAGAAATCTTCAGATCTGCTGCTGGTCATGTCAAATT
TATATACGCTTAAGAACGGCAGCCTGGTAATGTCGCCACAGCGAATGTTC
CCTACCACGCCGCTCGTCAAGCTGGGAGAGAACCACTTCTCGAAGGTCAA
GGAGTTCCTGGGTCGCTTTGCCAACATCCCGGACATCATTGAGCTGGATC
ACTTGACCGTGAGCGGAGATGTGACTTTCGGTCGTGGCGTTTCTTTGCGC
GGCACTGTGATCATCATTGCTAACCATGGCGATCGTATCGATATCCCAGC
TGGAGCCATTCTGGAGAACAAGATTGTATCTGGCAATATGCGCATCTTGG
ACCACGCAAGCTTTCTAGACCAT
BO17759.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RC | 1542 | CG4347-PC | 1..1539 | 17..1555 | 7695 | 100 | Plus |
| UGP-RD | 1536 | CG4347-PD | 1..1533 | 17..1555 | 7570 | 99.6 | Plus |
| UGP-RA | 1563 | CG4347-PA | 49..1560 | 44..1555 | 7560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RC | 2099 | CG4347-RC | 295..1833 | 17..1555 | 7695 | 100 | Plus |
| UGP-RD | 2093 | CG4347-RD | 295..1827 | 17..1555 | 7570 | 99.6 | Plus |
| UGP-RA | 2102 | CG4347-RA | 302..1813 | 44..1555 | 7560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9351917..9352329 | 1451..1039 | 2065 | 100 | Minus |
| 3L | 28110227 | 3L | 9352882..9353230 | 675..327 | 1745 | 100 | Minus |
| 3L | 28110227 | 3L | 9352601..9352827 | 902..676 | 1135 | 100 | Minus |
| 3L | 28110227 | 3L | 9353888..9354076 | 230..42 | 945 | 100 | Minus |
| 3L | 28110227 | 3L | 9352405..9352545 | 1040..900 | 705 | 100 | Minus |
| 3L | 28110227 | 3L | 9351746..9351850 | 1555..1451 | 525 | 100 | Minus |
| 3L | 28110227 | 3L | 9353738..9353831 | 322..229 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:47:02 has no hits.
BO17759.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:55 Download gff for
BO17759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RC | 1..1542 | 17..1559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:47 Download gff for
BO17759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RC | 206..1752 | 12..1559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:28 Download gff for
BO17759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RC | 295..1833 | 17..1557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:55 Download gff for
BO17759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RC | 206..1752 | 12..1559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:29 Download gff for
BO17759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RC | 295..1833 | 17..1557 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:29 Download gff for
BO17759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9351744..9351850 | 1451..1557 | 98 | <- | Minus |
| 3L | 9351918..9352327 | 1041..1450 | 100 | <- | Minus |
| 3L | 9352405..9352543 | 902..1040 | 100 | <- | Minus |
| 3L | 9352602..9352827 | 676..901 | 100 | <- | Minus |
| 3L | 9352882..9353228 | 329..675 | 100 | <- | Minus |
| 3L | 9353729..9353829 | 231..328 | 96 | <- | Minus |
| 3L | 9353888..9354074 | 44..230 | 100 | <- | Minus |
| 3L | 9358615..9358641 | 17..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:28 Download gff for
BO17759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9345702..9345927 | 676..901 | 100 | <- | Minus |
| arm_3L | 9344844..9344950 | 1451..1557 | 98 | <- | Minus |
| arm_3L | 9345018..9345427 | 1041..1450 | 100 | <- | Minus |
| arm_3L | 9345505..9345643 | 902..1040 | 100 | <- | Minus |
| arm_3L | 9345982..9346328 | 329..675 | 100 | <- | Minus |
| arm_3L | 9346829..9346929 | 231..328 | 96 | <- | Minus |
| arm_3L | 9346988..9347174 | 44..230 | 100 | <- | Minus |
| arm_3L | 9351715..9351741 | 17..43 | 100 | | Minus |
BO17759.pep Sequence
Translation from 16 to 1573
> BO17759.pep
MLDVPHEAKVRGHQRAPSDSKEFHEVTKRDALRLLEHDVDRLLETTEKAR
QPALKAEMGRFADLFGRFIQEEGPALDWNKIQKLPENAVMNYSNLKSPKN
EQNEIRNMLDKLVVIKLNGGLGTSMGCHGPKSVIPVRSDLTFLDLTVQQI
EHLNKTYDANVPLVLMNSFNTDEDTEKIVRKYKGFRVQIHTFNQSCFPRI
SREHYLPVAKDFDVEKDMEAWYPPGHGDFYDTFRNSGLLKKFIEEGREYC
FLSNIDNLGATVDLNILNKLVGEERATTPVEFVMEVTDKTRADVKGGTLI
QMENKLRLLEIAQVPPEHVDDFKSVKTFKFFNTNNIWANLAAIDRVLRER
TLNMEIIVNNKTLENGTRVIQLETAVGAAMKCFDGAIGINVPRSRFLPVK
KSSDLLLVMSNLYTLKNGSLVMSPQRMFPTTPLVKLGENHFSKVKEFLGR
FANIPDIIELDHLTVSGDVTFGRGVSLRGTVIIIANHGDRIDIPAGAILE
NKIVSGNMRILDHASFLDH
BO17759.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-PC | 513 | CG4347-PC | 1..513 | 1..513 | 2654 | 100 | Plus |
| UGP-PD | 511 | CG4347-PD | 1..511 | 1..513 | 2630 | 99.6 | Plus |
| UGP-PA | 520 | CG4347-PA | 15..520 | 8..513 | 2608 | 99.8 | Plus |
| UGP-PE | 518 | CG4347-PE | 15..518 | 8..513 | 2584 | 99.4 | Plus |
