Clone Sequence Records
BO17760.3prime Sequence
806 bp (805 high quality bases) assembled on 2006-10-13
> BO17760.3prime
ATGGTCTAGAAAGCTTGCTCCATTGATTGAATTCGCATTTGCATTGGCCG
CTGCTGCTGCCGCGGCTGACAGTGATTTCTGGCCCTCCTCCGCCGGCGAG
GGCGTTGCATCCCGCCGCGGCGGCATCCGTTCGTTGACGGCATCCAGGCC
CTTGGCCTCCGCGAACGAGGTAATCTTGTGATTGGGCGAGAAGCCCTGCA
TGGCGTTCTTGAGCGACTGCTTGCCGCCGGAGAGGGCGCCGAGGGGCAGG
GCGCCCGTGGGCGTCAGTCCCTTCAGCTGCAGCACCGACTCGGACTCCTC
GCGCAGCACGGAGAAGACGCGCGCCATCTTGCCAATGGCACGGATCTTGT
TGCGTATCACCTCCTTGCGCAGCGCCGCCTCGTCGTCGGAGAGTGGCTCC
TCGCTCTCCTCGGTCATGAGCTCGTCGTCGGAGCAGATGTTCAGCACGTT
CACCAACATCTCGGTGACCTTCTCGCCCACGAAGGGTAGCGACCAGGTGA
ACACGTCCATGAAGTTGGGCAGCCAGTACGGGTGCGGCGAGCAGTTGAAT
TGCCGGATGTTCATCACGTTGTTCTCGTACTTCAGCACCGCCGCCTTGTT
GTTGTACACGTCGAGATAGTTGGGCGCCGAGAAGATGGTGATCAGCGAGG
GGAAGCCGGTGGTCTGGCTTTTGCGGTACATGCGGTAGCCGGCGTCCTGC
GCCTCGTGCGCCCGGATGATCGACAGCAGGTTGTTGTTCTGCANGAAGTC
GCAGCAGGCGGCGTAGCTGTAGAAGTACGAGCAGCCGCGCACGGAGTTGT
GCGTGT
BO17760.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:10:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9819-PA | 1755 | CanA-14F-RA | 965..1752 | 806..19 | 3921 | 99.8 | Minus |
| CG9819-PB | 1755 | CanA-14F-RB | 965..1752 | 806..19 | 3921 | 99.8 | Minus |
| CG9842-PA | 1713 | Pp2B-14D-RA | 941..1638 | 806..109 | 3371 | 99.2 | Minus |
| CG1455-PA | 1869 | CanA1-RA | 1012..1212 | 657..457 | 430 | 88.5 | Minus |
| CG1455-PA | 1869 | CanA1-RA | 1585..1628 | 162..119 | 195 | 97.7 | Minus |
| CG1455-PA | 1869 | CanA1-RA | 1462..1502 | 285..245 | 155 | 95.1 | Minus |
| CG1455-PA | 1869 | CanA1-RA | 926..974 | 743..695 | 145 | 91.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanA-14F-RD | 4007 | CG9819-RD | 1256..2043 | 806..19 | 3929 | 99.9 | Minus |
| CanA-14F-RC | 7965 | CG9819-RC | 1583..2370 | 806..19 | 3929 | 99.9 | Minus |
| CanA-14F-RB | 6837 | CG9819-RB | 1448..2235 | 806..19 | 3929 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16566279..16567066 | 19..806 | 3929 | 99.9 | Plus |
| X | 23542271 | X | 16557770..16558467 | 109..806 | 3419 | 99.3 | Plus |
| 3R | 32079331 | 3R | 31043114..31043244 | 597..467 | 445 | 89.3 | Minus |
| 3R | 32079331 | 3R | 31042584..31042692 | 803..695 | 339 | 87.2 | Minus |
| 3R | 32079331 | 3R | 31042763..31042853 | 684..594 | 215 | 82.4 | Minus |
| 3R | 32079331 | 3R | 31044206..31044298 | 300..208 | 210 | 81.7 | Minus |
| 3R | 32079331 | 3R | 31046100..31046150 | 169..119 | 210 | 94.1 | Minus |
| 3R | 32079331 | 3R | 31044064..31044131 | 377..310 | 205 | 86.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:34:49 has no hits.
BO17760.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:36 Download gff for
BO17760.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9819-PA | 965..1755 | 15..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:02:39 Download gff for
BO17760.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA-14F-RB | 1448..2240 | 11..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:45:16 Download gff for
BO17760.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA-14F-RB | 1448..2240 | 11..806 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:45:16 Download gff for
BO17760.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16566274..16567066 | 11..806 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:02:39 Download gff for
BO17760.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16460307..16461099 | 11..806 | 99 | | Plus |
BO17760.5prime Sequence
852 bp (796 high quality bases) assembled on 2006-10-13
> BO17760.5prime
GAAGTTATCAGCGACATGTCTTCGCCGGCGGCGCAGAGCAACAGCAGCAG
CAGCCAGTCGCAGTCCGCAGCCCAGCAGCAGCAGCAGCAGAATCAAAAGG
CCAATGTCAACAACACACACGACAACAAGAATGCCGCGGCGACGACGGGG
ACAGCGGCGGGATCGGGATCAGGCGGAGCGGCAGGCTCGGCGGGCACACA
GCAGCAGGGTCAGGGCGGCACTGGAACCTCGAGCGGTCCATCCAGCCCAA
CCAAGCGCAGCACAATATCGACAAAGGAGCGTGTGATCGACAGCGTGGCA
TTTCCGCCGAGCCGTAAACTCACCTGCGCGGATGTGTTCGACGCGCGGAC
CGGAAAGCCGCAGCACGATGTCCTCAAGCAGCACTTCATCCTGGAGGGCA
GGATCGAGGAGAGCGCCGCCCTGCGCATTATCCAAGAGGGCGCCACGCTA
TTGCGCACGGAAAAGACGATGATCGACATCGAGGCGCCGGTGACGGTGTG
CGGCGATATCCATGGCCAGTTCTACGATCTGATGAAGCTATTCGAGATTG
GGGGCTCGCCGGCGACCACCAAGTATCTGTTCCTGGGCGACTACGTCGAT
CGGGGCTACTTCAGCATCGAGTGCGTACTGTATTTGTGGTCGCTAAAGAT
CACCTATCCGCAGACGCTGTTCCTGCTGCGCGGCAACCACGAGTGCCGGC
ACTTAACCGAGTACTTCACCTTCAAGCAGGAGTGCAAGATCAAGTACTCG
GAGCGCGTGTACGACGCCTGCATGGACGCATTCGACTGCCTGCCGCTGGG
CGCGCTCATGAACCAGCAGTTCCTCTGCGTGCACGGCGGTCTGTCGCCGG
AG
BO17760.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9819-PA | 1755 | CanA-14F-RA | 1..837 | 16..852 | 4135 | 99.7 | Plus |
| CG9819-PB | 1755 | CanA-14F-RB | 1..837 | 16..852 | 4135 | 99.7 | Plus |
| CG9842-PA | 1713 | Pp2B-14D-RA | 514..813 | 553..852 | 1350 | 98 | Plus |
| CG9842-PA | 1713 | Pp2B-14D-RA | 424..506 | 463..545 | 265 | 92.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanA-14F-RD | 4007 | CG9819-RD | 291..1128 | 15..852 | 4160 | 99.8 | Plus |
| CanA-14F-RC | 7965 | CG9819-RC | 618..1455 | 15..852 | 4160 | 99.8 | Plus |
| CanA-14F-RB | 6837 | CG9819-RB | 483..1320 | 15..852 | 4160 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16567194..16568031 | 852..15 | 4160 | 99.8 | Minus |
| X | 23542271 | X | 16558595..16559173 | 852..274 | 1905 | 88.6 | Minus |
| 3R | 32079331 | 3R | 31041633..31041875 | 379..621 | 300 | 74.9 | Plus |
| 3R | 32079331 | 3R | 31042283..31042396 | 739..852 | 300 | 84.2 | Plus |
| 3R | 32079331 | 3R | 31041962..31042080 | 620..738 | 205 | 78.2 | Plus |
| 3R | 32079331 | 3R | 12425404..12425529 | 606..481 | 195 | 77 | Minus |
| 2L | 23513712 | 2L | 7830510..7830633 | 487..610 | 185 | 76.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:01:19 has no hits.
BO17760.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:37 Download gff for
BO17760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9819-PB | 1..837 | 16..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:46:54 Download gff for
BO17760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA-14F-RB | 478..1320 | 11..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:15:17 Download gff for
BO17760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA-14F-RB | 478..1320 | 11..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:15:17 Download gff for
BO17760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16567194..16568036 | 11..852 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:46:54 Download gff for
BO17760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16461227..16462069 | 11..852 | 99 | | Minus |
BO17760.complete Sequence
1785 bp assembled on 2008-08-14
GenBank Submission: KX798207
> BO17760.complete
GAAGTTATCAGCGACATGTCTTCGCCGGCGGCGCAGAGCAACAGCAGCAG
CAGCCAGTCGCAGTCCGCAGCCCAGCAGCAGCAGCAGCAGAATCAAAAGG
CCAATGTCAACAACACACACGACAACAAGAATGCCGCGGCGACGACGGGG
ACAGCGGCGGGATCGGGATCAGGCGGAGCGGCAGGCTCGGCGGGCACACA
GCAGCAGGGTCAGGGCGGCACTGGAACCTCGAGCGGTCCATCCAGCCCAA
CCAAGCGCAGCACAATATCGACAAAGGAGCGTGTGATCGACAGCGTGGCA
TTTCCGCCGAGCCGTAAACTCACCTGCGCGGATGTGTTCGACGCGCGGAC
CGGAAAGCCGCAGCACGATGTCCTCAAGCAGCACTTCATCCTGGAGGGCA
GGATCGAGGAGAGCGCCGCCCTGCGCATTATCCAAGAGGGCGCCACGCTA
TTGCGCACGGAAAAGACGATGATCGACATCGAGGCGCCGGTGACGGTGTG
CGGCGATATCCATGGCCAGTTCTACGATCTGATGAAGCTATTCGAGATTG
GGGGCTCGCCGGCGACCACCAAGTATCTGTTCCTGGGCGACTACGTCGAT
CGGGGCTACTTCAGCATCGAGTGCGTACTGTATTTGTGGTCGCTAAAGAT
CACCTATCCGCAGACGCTGTTCCTGCTGCGCGGCAACCACGAGTGCCGGC
ACTTAACCGAGTACTTCACCTTCAAGCAGGAGTGCAAGATCAAGTACTCG
GAGCGCGTGTACGACGCCTGCATGGACGCATTCGACTGCCTGCCGCTGGC
GGCGCTCATGAACCAGCAGTTCCTCTGCGTGCACGGCGGTCTGTCGCCGG
AGATACACGAGCTGGAGGACATCCGACGGCTCGACCGCTTCAAGGAGCCT
CCCGCCTTTGGCCCCATGTGCGACCTGCTGTGGTCCGATCCGCTGGAGGA
CTTCGGCAACGAGAAGAACTCGGACTTCTACACGCACAACTCCGTGCGCG
GCTGCTCGTACTTCTACAGCTACGCCGCCTGCTGCGACTTCCTGCAGAAC
AACAACCTGCTGTCGATCATCCGGGCGCACGAGGCGCAGGACGCCGGCTA
CCGCATGTACCGCAAAAGCCAGACCACCGGCTTCCCCTCGCTGATCACCA
TCTTCTCGGCGCCCAACTATCTCGACGTGTACAACAACAAGGCGGCGGTG
CTGAAGTACGAGAACAACGTGATGAACATCCGGCAATTCAACTGCTCGCC
GCACCCGTACTGGCTGCCCAACTTCATGGACGTGTTCACCTGGTCGCTAC
CCTTCGTGGGCGAGAAGGTCACCGAGATGTTGGTGAACGTGCTGAACATC
TGCTCCGACGACGAGCTCATGACCGAGGAGAGCGAGGAGCCACTCTCCGA
CGACGAGGCGGCGCTGCGCAAGGAGGTGATACGCAACAAGATCCGTGCCA
TTGGCAAGATGGCGCGCGTCTTCTCCGTGCTGCGCGAGGAGTCCGAGTCG
GTGCTGCAGCTGAAGGGACTGACGCCCACGGGCGCCCTGCCCCTCGGCGC
CCTCTCCGGCGGCAAGCAGTCGCTCAAGAACGCCATGCAGGGCTTCTCGC
CCAATCACAAGATTACCTCGTTCGCGGAGGCCAAGGGCCTGGATGCCGTC
AACGAACGGATGCCGCCGCGGCGGGATGCAACGCCCTCGCCGGCGGAGGA
GGGCCAGAAATCACTGTCAGCCGCGGCAGCAGCAGCGGCCAATGCAAATG
CGAATTCAATCAATGGAGCAAGCTTTCTAGACCAT
BO17760.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanA-14F-RD | 1755 | CG9819-PD | 1..1752 | 16..1767 | 8760 | 100 | Plus |
| CanA-14F-RC | 1755 | CG9819-PC | 1..1752 | 16..1767 | 8760 | 100 | Plus |
| CanA-14F-RB | 1755 | CG9819-PB | 1..1752 | 16..1767 | 8760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:38:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanA-14F-RD | 4007 | CG9819-RD | 291..2043 | 15..1767 | 8765 | 100 | Plus |
| CanA-14F-RC | 7965 | CG9819-RC | 618..2370 | 15..1767 | 8765 | 100 | Plus |
| CanA-14F-RB | 6837 | CG9819-RB | 483..2235 | 15..1767 | 8765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16566279..16568031 | 1767..15 | 8765 | 100 | Minus |
| X | 23542271 | X | 16557770..16559173 | 1677..274 | 5940 | 94.9 | Minus |
| 3R | 32079331 | 3R | 31042487..31042692 | 886..1091 | 580 | 85.4 | Plus |
| 3R | 32079331 | 3R | 31043114..31043244 | 1189..1319 | 445 | 89.3 | Plus |
| 3R | 32079331 | 3R | 31042283..31042398 | 739..854 | 310 | 84.5 | Plus |
| 3R | 32079331 | 3R | 31041633..31041875 | 379..621 | 300 | 74.9 | Plus |
| 3R | 32079331 | 3R | 31042763..31042853 | 1102..1192 | 215 | 82.4 | Plus |
| 3R | 32079331 | 3R | 31044206..31044298 | 1486..1578 | 210 | 81.7 | Plus |
| 3R | 32079331 | 3R | 31046100..31046150 | 1617..1667 | 210 | 94.1 | Plus |
| 3R | 32079331 | 3R | 31041962..31042080 | 620..738 | 205 | 78.2 | Plus |
| 3R | 32079331 | 3R | 31044064..31044131 | 1409..1476 | 205 | 86.8 | Plus |
| 3R | 32079331 | 3R | 12425404..12425529 | 606..481 | 195 | 77 | Minus |
| 2L | 23513712 | 2L | 7830510..7830633 | 487..610 | 185 | 76.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:38:33 has no hits.
BO17760.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:28 Download gff for
BO17760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA-14F-RB | 491..2235 | 23..1769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:37 Download gff for
BO17760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA-14F-RB | 491..2235 | 23..1769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-03 17:32:12 Download gff for
BO17760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA-14F-RB | 478..2240 | 11..1775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:26 Download gff for
BO17760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA-14F-RB | 491..2235 | 23..1769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:26 Download gff for
BO17760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16566277..16568023 | 23..1769 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:37 Download gff for
BO17760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16460310..16462056 | 23..1769 | 99 | | Minus |
BO17760.pep Sequence
Translation from 15 to 1785
> BO17760.pep
MSSPAAQSNSSSSQSQSAAQQQQQQNQKANVNNTHDNKNAAATTGTAAGS
GSGGAAGSAGTQQQGQGGTGTSSGPSSPTKRSTISTKERVIDSVAFPPSR
KLTCADVFDARTGKPQHDVLKQHFILEGRIEESAALRIIQEGATLLRTEK
TMIDIEAPVTVCGDIHGQFYDLMKLFEIGGSPATTKYLFLGDYVDRGYFS
IECVLYLWSLKITYPQTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYD
ACMDAFDCLPLAALMNQQFLCVHGGLSPEIHELEDIRRLDRFKEPPAFGP
MCDLLWSDPLEDFGNEKNSDFYTHNSVRGCSYFYSYAACCDFLQNNNLLS
IIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYEN
NVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVTEMLVNVLNICSDDE
LMTEESEEPLSDDEAALRKEVIRNKIRAIGKMARVFSVLREESESVLQLK
GLTPTGALPLGALSGGKQSLKNAMQGFSPNHKITSFAEAKGLDAVNERMP
PRRDATPSPAEEGQKSLSAAAAAAANANANSINGASFLDH
BO17760.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanA-14F-PD | 584 | CG9819-PD | 1..584 | 1..584 | 3054 | 100 | Plus |
| CanA-14F-PC | 584 | CG9819-PC | 1..584 | 1..584 | 3054 | 100 | Plus |
| CanA-14F-PB | 584 | CG9819-PB | 1..584 | 1..584 | 3054 | 100 | Plus |
| CanA-14F-PA | 584 | CG9819-PA | 1..584 | 1..584 | 3054 | 100 | Plus |
| Pp2B-14D-PB | 570 | CG9842-PB | 6..554 | 7..562 | 2497 | 85.4 | Plus |
