Clone Sequence Records
BO17763.3prime Sequence
521 bp (521 high quality bases) assembled on 2006-10-13
> BO17763.3prime
ATGGTCTAGAAAGCTTGCTGGAATTCCCATTAGTGACACAATCGCGGAAA
CCCATTTGGAACCCACCTTGACCAGCGCATTTAGGGGCTCACCCTTTTCG
ATATACCTAAAGTTTACCTCCCAGCTGCGCAGATTATCCCGCTCCCCGCA
ATGCCGGCTGCCGCACTGGAACTGCCCGGTTCCGGTGACCACCTCCTGCT
CCGTTCGCCAGCGCAGCGCTATCTTGTTCTCCTTGTAGCGGGACAGGTCC
GCGATGCAGTACTCCTTAAATAGCTTCCTGTAGTATCGCAGGGCCAAGCG
CTGCTCCCAGCTTAGGGTGTCGCTATCCAACTCGTCGTCCTCCCACAGGA
AGCGGTGATTCTCTCGGATTACATCGATGTCTCGCTTGTGCCGACGTGAT
TCCGTCTCATTCGGTAGGTTAAGCACGTAATTACTAAGTATATAGTTGTG
TCGCTCCTTGGCACTCAGGTTGTTCAGATTCACTGGGAATAATTGCGAGC
CGCTCATGTCGACTGATAACT
BO17763.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16890-PB | 492 | CG16890-RB | 1..489 | 507..19 | 2445 | 100 | Minus |
| CG16890-PA | 777 | CG16890-RA | 1..444 | 507..64 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:45:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16890-RC | 1179 | CG16890-RC | 24..467 | 507..64 | 2220 | 100 | Minus |
| CG16890-RA | 831 | CG16890-RA | 24..467 | 507..64 | 2220 | 100 | Minus |
| CG16890-RD | 1184 | CG16890-RD | 53..472 | 483..64 | 2100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13782949..13783437 | 19..507 | 2445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:45:14 has no hits.
BO17763.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:41 Download gff for
BO17763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16890-PB | 1..492 | 18..507 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:03:00 Download gff for
BO17763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16890-RA | 16..467 | 64..519 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:58:12 Download gff for
BO17763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16890-RA | 16..467 | 64..519 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:58:12 Download gff for
BO17763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13782949..13783445 | 19..519 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:03:00 Download gff for
BO17763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13782949..13783445 | 19..519 | 99 | | Plus |
BO17763.5prime Sequence
521 bp (521 high quality bases) assembled on 2006-10-13
> BO17763.5prime
GAAGTTATCAGTCGACATGAGCGGCTCGCAATTATTCCCAGTGAATCTGA
ACAACCTGAGTGCCAAGGAGCGACACAACTATATACTTAGTAATTACGTG
CTTAACCTACCGAATGAGACGGAATCACGTCGGCACAAGCGAGACATCGA
TGTAATCCGAGAGAATCACCGCTTCCTGTGGGAGGACGACGAGTTGGATA
GCGACACCCTAAGCTGGGAGCAGCGCTTGGCCCTGCGATACTACAGGAAG
CTATTTAAGGAGTACTGCATCGCGGACCTGTCCCGCTACAAGGAGAACAA
GATAGCGCTGCGCTGGCGAACGGAGCAGGAGGTGGTCACCGGAACCGGGC
AGTTCCAGTGCGGCAGCCGGCATTGCGGGGAGCGGGATAATCTGCGCAGC
TGGGAGGTAAACTTTAGGTATATCGAAAAGGGTGAGCCCCTAAATGCGCT
GGTCAAGGTGGGTTCCAAATGGGTTTCCGCGATTGTGTCACTAATGGGAA
TTCCAGCAAGCTTTCTAGACC
BO17763.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16890-PB | 492 | CG16890-RB | 1..489 | 17..505 | 2445 | 100 | Plus |
| CG16890-PA | 777 | CG16890-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16890-RC | 1179 | CG16890-RC | 24..467 | 17..460 | 2220 | 100 | Plus |
| CG16890-RA | 831 | CG16890-RA | 24..467 | 17..460 | 2220 | 100 | Plus |
| CG16890-RD | 1184 | CG16890-RD | 53..472 | 41..460 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:35:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13782949..13783437 | 505..17 | 2445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:35:56 has no hits.
BO17763.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:43 Download gff for
BO17763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16890-PB | 1..492 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:02:42 Download gff for
BO17763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16890-RA | 16..467 | 5..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:40 Download gff for
BO17763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16890-RA | 16..467 | 5..460 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:40 Download gff for
BO17763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13782949..13783445 | 5..505 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:02:42 Download gff for
BO17763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13782949..13783445 | 5..505 | 99 | | Minus |
BO17763.complete Sequence
523 bp assembled on 2007-10-17
GenBank Submission: FJ634206
> BO17763.complete
GAAGTTATCAGTCGACATGAGCGGCTCGCAATTATTCCCAGTGAATCTGA
ACAACCTGAGTGCCAAGGAGCGACACAACTATATACTTAGTAATTACGTG
CTTAACCTACCGAATGAGACGGAATCACGTCGGCACAAGCGAGACATCGA
TGTAATCCGAGAGAATCACCGCTTCCTGTGGGAGGACGACGAGTTGGATA
GCGACACCCTAAGCTGGGAGCAGCGCTTGGCCCTGCGATACTACAGGAAG
CTATTTAAGGAGTACTGCATCGCGGACCTGTCCCGCTACAAGGAGAACAA
GATAGCGCTGCGCTGGCGAACGGAGCAGGAGGTGGTCACCGGAACCGGGC
AGTTCCAGTGCGGCAGCCGGCATTGCGGGGAGCGGGATAATCTGCGCAGC
TGGGAGGTAAACTTTAGGTATATCGAAAAGGGTGAGCCCCTAAATGCGCT
GGTCAAGGTGGGTTCCAAATGGGTTTCCGCGATTGTGTCACTAATGGGAA
TTCCAGCAAGCTTTCTAGACCAT
BO17763.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16890-RC | 777 | CG16890-PC | 1..444 | 17..460 | 2220 | 100 | Plus |
| CG16890-RA | 777 | CG16890-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
| CG16890-RD | 747 | CG16890-PD | 1..414 | 47..460 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16890-RC | 1179 | CG16890-RC | 24..467 | 17..460 | 2220 | 100 | Plus |
| CG16890-RA | 831 | CG16890-RA | 24..467 | 17..460 | 2220 | 100 | Plus |
| CG16890-RD | 1184 | CG16890-RD | 53..472 | 41..460 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13782949..13783437 | 505..17 | 2445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:36:13 has no hits.
BO17763.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:34 Download gff for
BO17763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16890-RB | 1..492 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:19 Download gff for
BO17763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16890-RB | 13..509 | 5..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:35 Download gff for
BO17763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16890-RA | 24..467 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:03 Download gff for
BO17763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16890-RB | 21..509 | 17..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:18 Download gff for
BO17763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16890-RA | 24..467 | 17..460 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:18 Download gff for
BO17763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13782947..13783437 | 17..507 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:35 Download gff for
BO17763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13782947..13783437 | 17..507 | 99 | | Minus |
BO17763.pep Sequence
Translation from 16 to 523
> BO17763.pep
MSGSQLFPVNLNNLSAKERHNYILSNYVLNLPNETESRRHKRDIDVIREN
HRFLWEDDELDSDTLSWEQRLALRYYRKLFKEYCIADLSRYKENKIALRW
RTEQEVVTGTGQFQCGSRHCGERDNLRSWEVNFRYIEKGEPLNALVKVGS
KWVSAIVSLMGIPASFLDH
BO17763.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16890-PC | 258 | CG16890-PC | 1..148 | 1..148 | 793 | 100 | Plus |
| CG16890-PA | 258 | CG16890-PA | 1..148 | 1..148 | 793 | 100 | Plus |
| CG16890-PD | 248 | CG16890-PD | 1..138 | 11..148 | 740 | 99.3 | Plus |
