Clone BO17765 Report

Search the DGRC for BO17765

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG8097-RA
Protein status:BO17765.pep: validated full length
Sequenced Size:1372

Clone Sequence Records

BO17765.3prime Sequence

804 bp (690 high quality bases) assembled on 2006-10-13

> BO17765.3prime
ATGGTCTAGAAAGCTTGCTACGTAGTCCACCGGTTCTATGCCCAGGACGG
CCAGAGCCGTATTCAGGACCTGTCTCACCGCCTTGATCAGGTAGATCCTG
GCGTACAAGATCGGCATTAGTTCATCGCGCTTCTGAAGAAGGACCTTCTT
ATGATAATAGAAGCGACTGAAGGCGGCAGCCAGGTTCTCAACATAGTGCA
CAAGCAGATGGAGACCGCAATGACCCTGGTCCAATTGATCCATTATGGAC
TCCATTAGCTCCGGAAAGGTAAGGAGGTAGCCATAAATCAACTCCCAGTC
AACATCATCCTCTAGAACGCTGAGATCGATCTCATCCAGCAGTGGCAGTT
TCTCATAGGCACAATTGTTAACCTCATAATTAAATTTGCGCAGCAGCGCC
TCCAGACGTGCTGAATTGTACAAGATGTAAGAAGCGCCCTTGCAAATGCC
AACTCCATTGCGCACCACACTCACGGCGCTGGAGTGGCGCACCACAAAGA
GATCCACAATCACGGCAGCGGCCGCAAGACGCTTCGTCAGCGTATCAAGG
CTACTCATTGGTACCGGACACATTCCGGAGCGCTGCGTGGCCATCAGCTC
CATGTGCTGGCAGCGCAGCTTTAAGTACTCGTCAACAGTCAATGAGCTGG
CGCCCTTATTTATCGGCTCCAAAACAGGACCGCATGTGAGGCACACTTGT
TCCACGGGCTGCTTGCCGTTGCAGCATTTCTCCAGCTCGACAGTCACACA
GATGGTGTCCCTTCTGGCGGTCATTCGGCTCCACGAGGGCGCCAAGACGA
GTAG

BO17765.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8097-PA 1341 CG8097-RA 597..1338 760..19 3685 99.8 Minus
CG8097-PA 1341 CG8097-RA 570..598 788..760 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8097-RB 1903 CG8097-RB 858..1641 804..19 3865 99.6 Minus
CG8097-RA 1672 CG8097-RA 858..1641 804..19 3865 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15584324..15584641 619..302 1590 100 Minus
X 23542271 X 15584703..15584987 303..19 1425 100 Minus
X 23542271 X 15584016..15584199 804..619 815 98.4 Minus
Blast to na_te.dros performed on 2015-02-03 06:55:39 has no hits.

BO17765.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:43 Download gff for BO17765.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8097-PA 555..1341 15..804 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:25 Download gff for BO17765.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 858..1646 14..804 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:40 Download gff for BO17765.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 858..1646 14..804 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:40 Download gff for BO17765.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15584016..15584198 620..804 98 -> Minus
X 15584324..15584639 304..619 100 -> Minus
X 15584703..15584992 14..303 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:25 Download gff for BO17765.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15478357..15478672 304..619 100 -> Minus
arm_X 15478049..15478231 620..804 98 -> Minus
arm_X 15478736..15479025 14..303 99   Minus

BO17765.5prime Sequence

782 bp (708 high quality bases) assembled on 2006-10-13

> BO17765.5prime
GAAGTTATCAGTCGACATGGATTGTAATCCAAGGTTGCAGGTTGGCCAGC
AATTATTCGAATTTTTTACCAAGCCGGAAAAGCCGGATGAGTCTGGTGGC
GATGTAGCAGCTCCGTTGCTCTTGAAGAAATTCGGCAAGTTGATCCGTTA
CAACAACGATGATCTGACCGAGCAGGGTGACTTGACTTTGGCGGCCATCC
CGCGTTACTGGCAAAAATATTTAAAAAGCCAGGGTCTGAAGCTGCGCATC
GATGGCGACGAACTGCTCCCCAGCCCGGTGGACCGCCTGGAGTTGATGGA
GCATTCACGCAAGTGGCGTTTCCCGCTCGCCGAAATCACTGTGCTGAACA
AGGAACGCTACTCTCTGCGTTTCCAGCGCCATCCGATTATTGCACATGTG
CTTAACTCTGTGCTCACGCTGCGCGGCGATTACGGCCGTTCGGCAAATAA
CAACCAATCGCGCACCATATGCTTGCAGTTGCAAGCCGTTGTCGGAGCCG
TCGATGGCGGGCAGGACTTGCGCCACTATCGCTTGCAGCAGCTATACAAG
ATACTGCTGCGCCTGGTTGACTACTCGTCTTGGCGCCTCGTGGAGCCGAA
TGACCGCCAGAAGGACACCATCTGTGTGACTGTCGAGCTGGAGAAATGCT
GCAACGGCAAGCAGCCCGTGGAACATGTGTGCCTCACATGCGGTCCTGTT
TTGGAGCCGATAAATAAGGGCGCCAGCTCATTGACTGTTGACGAGTACTT
AAAGCTGCGCTGCCAGCACATGGAGCTGATGG

BO17765.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8097-PA 1341 CG8097-RA 1..766 17..782 3830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8097-RB 1903 CG8097-RB 304..1069 17..782 3830 100 Plus
CG8097-RA 1672 CG8097-RA 304..1069 17..782 3830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15583462..15584199 17..754 3690 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:57:48 has no hits.

BO17765.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:44 Download gff for BO17765.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8097-PA 1..766 17..782 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:59 Download gff for BO17765.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 294..1069 8..782 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:02 Download gff for BO17765.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 294..1069 8..782 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:02 Download gff for BO17765.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15583452..15584198 8..753 99 -> Plus
X 15584324..15584352 754..782 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:59 Download gff for BO17765.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15477485..15478231 8..753 99 -> Plus
arm_X 15478357..15478385 754..782 100   Plus

BO17765.complete Sequence

1372 bp assembled on 2006-10-11

GenBank Submission: FJ634207

> BO17765.complete
GAAGTTATCAGTCGACATGGATTGTAATCCAAGGTTGCAGGTTGGCCAGC
AATTATTCGAATTTTTTACCAAGCCGGAAAAGCCGGATGAGTCTGGTGGC
GATGTAGCAGCTCCGTTGCTCTTGAAGAAATTCGGCAAGTTGATCCGTTA
CAACAACGATGATCTGACCGAGCAGGGTGACTTGACTTTGGCGGCCATCC
CGCGTTACTGGCAAAAATATTTAAAAAGCCAGGGTCTGAAGCTGCGCATC
GATGGCGACGAACTGCTCCCCAGCCCGGTGGACCGCCTGGAGTTGATGGA
GCATTCACGCAAGTGGCGTTTCCCGCTCGCCGAAATCACTGTGCTGAACA
AGGAACGCTACTCTCTGCGTTTCCAGCGCCATCCGATTATTGCACATGTG
CTTAACTCTGTGCTCACGCTGCGCGGCGATTACGGCCGTTCGGCAAATAA
CAACCAATCGCGCACCATATGCTTGCAGTTGCAAGCCGTTGTCGGAGCCG
TCGATGGCGGGCAGGACTTGCGCCACTATCGCTTGCAGCAGCTATACAAG
ATACTGCTGCGCCTGGTTGACTACTCGTCTTGGCGCCTCGTGGAGCCGAA
TGACCGCCAGAAGGACACCATCTGTGTGACTGTCGAGCTGGAGAAATGCT
GCAACGGCAAGCAGCCCGTGGAACATGTGTGCCTCACATGCGGTCCTGTT
TTGGAGCCGATAAATAAGGGCGCCAGCTCATTGACTGTTGACGAGTACTT
AAAGCTGCGCTGCCAGCACATGGAGCTGATGGCCACGCAGCGCTCCGGAA
TGTGTCCGGTACCAATGAGTAGCCTTGATACGCTGACGAAGCGTCTTGCG
GCCGCTGCCGTGATTGTGGATCTCTTTGTGGTGCGCCACTCCAGCGCCGT
GAGTGTGGTGCGCAATGGAGTTGGCATTTGCAAGGGCGCTTCTTACATCT
TGTACAATTCAGCACGTCTGGAGGCGCTGCTGCGCAAATTTAATTATGAG
GTTAACAATTGTGCCTATGAGAAACTGCCACTGCTGGATGAGATCGATCT
CAGCGTTCTAGAGGATGATGTTGACTGGGAGTTGATTTATGGCTACCTCC
TTACCTTTCCGGAGCTAATGGAGTCCATAATGGATCAATTGGACCAGGGT
CATTGCGGTCTCCATCTGCTTGTGCACTATGTTGAGAACCTGGCTGCCGC
CTTCAGTCGCTTCTATTATCATAAGAAGGTCCTTCTTCAGAAGCGCGATG
AACTAATGCCGATCTTGTACGCCAGGATCTACCTGATCAAGGCGGTGAGA
CAGGTCCTGAATACGGCTCTGGCCGTCCTGGGCATAGAACCGGTGGACTA
CGTAGCAAGCTTTCTAGACCAT

BO17765.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8097-RB 1341 CG8097-PB 1..1338 17..1354 6690 100 Plus
CG8097-RA 1341 CG8097-PA 1..1338 17..1354 6690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8097-RB 1903 CG8097-RB 304..1641 17..1354 6690 100 Plus
CG8097-RA 1672 CG8097-RA 304..1641 17..1354 6690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15583462..15584199 17..754 3690 100 Plus
X 23542271 X 15584324..15584641 754..1071 1590 100 Plus
X 23542271 X 15584703..15584987 1070..1354 1425 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:33:35 has no hits.

BO17765.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:48 Download gff for BO17765.complete
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 1..1341 17..1358 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:29 Download gff for BO17765.complete
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 292..1644 8..1359 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:21 Download gff for BO17765.complete
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 304..1641 17..1356 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:48 Download gff for BO17765.complete
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 292..1644 8..1359 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:57 Download gff for BO17765.complete
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 304..1641 17..1356 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:57 Download gff for BO17765.complete
Subject Subject Range Query Range Percent Splice Strand
X 15583462..15584198 17..753 100 -> Plus
X 15584324..15584639 754..1069 100 -> Plus
X 15584703..15584987 1070..1356 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:21 Download gff for BO17765.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15477495..15478231 17..753 100 -> Plus
arm_X 15478357..15478672 754..1069 100 -> Plus
arm_X 15478736..15479020 1070..1356 99   Plus

BO17765.pep Sequence

Translation from 16 to 1372

> BO17765.pep
MDCNPRLQVGQQLFEFFTKPEKPDESGGDVAAPLLLKKFGKLIRYNNDDL
TEQGDLTLAAIPRYWQKYLKSQGLKLRIDGDELLPSPVDRLELMEHSRKW
RFPLAEITVLNKERYSLRFQRHPIIAHVLNSVLTLRGDYGRSANNNQSRT
ICLQLQAVVGAVDGGQDLRHYRLQQLYKILLRLVDYSSWRLVEPNDRQKD
TICVTVELEKCCNGKQPVEHVCLTCGPVLEPINKGASSLTVDEYLKLRCQ
HMELMATQRSGMCPVPMSSLDTLTKRLAAAAVIVDLFVVRHSSAVSVVRN
GVGICKGASYILYNSARLEALLRKFNYEVNNCAYEKLPLLDEIDLSVLED
DVDWELIYGYLLTFPELMESIMDQLDQGHCGLHLLVHYVENLAAAFSRFY
YHKKVLLQKRDELMPILYARIYLIKAVRQVLNTALAVLGIEPVDYVASFL
DH

BO17765.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8097-PB 446 CG8097-PB 1..446 1..446 2319 100 Plus
CG8097-PA 446 CG8097-PA 1..446 1..446 2319 100 Plus