Clone Sequence Records
BO17765.3prime Sequence
804 bp (690 high quality bases) assembled on 2006-10-13
> BO17765.3prime
ATGGTCTAGAAAGCTTGCTACGTAGTCCACCGGTTCTATGCCCAGGACGG
CCAGAGCCGTATTCAGGACCTGTCTCACCGCCTTGATCAGGTAGATCCTG
GCGTACAAGATCGGCATTAGTTCATCGCGCTTCTGAAGAAGGACCTTCTT
ATGATAATAGAAGCGACTGAAGGCGGCAGCCAGGTTCTCAACATAGTGCA
CAAGCAGATGGAGACCGCAATGACCCTGGTCCAATTGATCCATTATGGAC
TCCATTAGCTCCGGAAAGGTAAGGAGGTAGCCATAAATCAACTCCCAGTC
AACATCATCCTCTAGAACGCTGAGATCGATCTCATCCAGCAGTGGCAGTT
TCTCATAGGCACAATTGTTAACCTCATAATTAAATTTGCGCAGCAGCGCC
TCCAGACGTGCTGAATTGTACAAGATGTAAGAAGCGCCCTTGCAAATGCC
AACTCCATTGCGCACCACACTCACGGCGCTGGAGTGGCGCACCACAAAGA
GATCCACAATCACGGCAGCGGCCGCAAGACGCTTCGTCAGCGTATCAAGG
CTACTCATTGGTACCGGACACATTCCGGAGCGCTGCGTGGCCATCAGCTC
CATGTGCTGGCAGCGCAGCTTTAAGTACTCGTCAACAGTCAATGAGCTGG
CGCCCTTATTTATCGGCTCCAAAACAGGACCGCATGTGAGGCACACTTGT
TCCACGGGCTGCTTGCCGTTGCAGCATTTCTCCAGCTCGACAGTCACACA
GATGGTGTCCCTTCTGGCGGTCATTCGGCTCCACGAGGGCGCCAAGACGA
GTAG
BO17765.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8097-PA | 1341 | CG8097-RA | 597..1338 | 760..19 | 3685 | 99.8 | Minus |
CG8097-PA | 1341 | CG8097-RA | 570..598 | 788..760 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:55:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8097-RB | 1903 | CG8097-RB | 858..1641 | 804..19 | 3865 | 99.6 | Minus |
CG8097-RA | 1672 | CG8097-RA | 858..1641 | 804..19 | 3865 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:55:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15584324..15584641 | 619..302 | 1590 | 100 | Minus |
X | 23542271 | X | 15584703..15584987 | 303..19 | 1425 | 100 | Minus |
X | 23542271 | X | 15584016..15584199 | 804..619 | 815 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:55:39 has no hits.
BO17765.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:43 Download gff for
BO17765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8097-PA | 555..1341 | 15..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:25 Download gff for
BO17765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8097-RA | 858..1646 | 14..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:40 Download gff for
BO17765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8097-RA | 858..1646 | 14..804 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:40 Download gff for
BO17765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15584016..15584198 | 620..804 | 98 | -> | Minus |
X | 15584324..15584639 | 304..619 | 100 | -> | Minus |
X | 15584703..15584992 | 14..303 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:25 Download gff for
BO17765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15478357..15478672 | 304..619 | 100 | -> | Minus |
arm_X | 15478049..15478231 | 620..804 | 98 | -> | Minus |
arm_X | 15478736..15479025 | 14..303 | 99 | | Minus |
BO17765.5prime Sequence
782 bp (708 high quality bases) assembled on 2006-10-13
> BO17765.5prime
GAAGTTATCAGTCGACATGGATTGTAATCCAAGGTTGCAGGTTGGCCAGC
AATTATTCGAATTTTTTACCAAGCCGGAAAAGCCGGATGAGTCTGGTGGC
GATGTAGCAGCTCCGTTGCTCTTGAAGAAATTCGGCAAGTTGATCCGTTA
CAACAACGATGATCTGACCGAGCAGGGTGACTTGACTTTGGCGGCCATCC
CGCGTTACTGGCAAAAATATTTAAAAAGCCAGGGTCTGAAGCTGCGCATC
GATGGCGACGAACTGCTCCCCAGCCCGGTGGACCGCCTGGAGTTGATGGA
GCATTCACGCAAGTGGCGTTTCCCGCTCGCCGAAATCACTGTGCTGAACA
AGGAACGCTACTCTCTGCGTTTCCAGCGCCATCCGATTATTGCACATGTG
CTTAACTCTGTGCTCACGCTGCGCGGCGATTACGGCCGTTCGGCAAATAA
CAACCAATCGCGCACCATATGCTTGCAGTTGCAAGCCGTTGTCGGAGCCG
TCGATGGCGGGCAGGACTTGCGCCACTATCGCTTGCAGCAGCTATACAAG
ATACTGCTGCGCCTGGTTGACTACTCGTCTTGGCGCCTCGTGGAGCCGAA
TGACCGCCAGAAGGACACCATCTGTGTGACTGTCGAGCTGGAGAAATGCT
GCAACGGCAAGCAGCCCGTGGAACATGTGTGCCTCACATGCGGTCCTGTT
TTGGAGCCGATAAATAAGGGCGCCAGCTCATTGACTGTTGACGAGTACTT
AAAGCTGCGCTGCCAGCACATGGAGCTGATGG
BO17765.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8097-PA | 1341 | CG8097-RA | 1..766 | 17..782 | 3830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8097-RB | 1903 | CG8097-RB | 304..1069 | 17..782 | 3830 | 100 | Plus |
CG8097-RA | 1672 | CG8097-RA | 304..1069 | 17..782 | 3830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15583462..15584199 | 17..754 | 3690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:57:48 has no hits.
BO17765.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:44 Download gff for
BO17765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8097-PA | 1..766 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:59 Download gff for
BO17765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8097-RA | 294..1069 | 8..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:02 Download gff for
BO17765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8097-RA | 294..1069 | 8..782 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:02 Download gff for
BO17765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15583452..15584198 | 8..753 | 99 | -> | Plus |
X | 15584324..15584352 | 754..782 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:59 Download gff for
BO17765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15477485..15478231 | 8..753 | 99 | -> | Plus |
arm_X | 15478357..15478385 | 754..782 | 100 | | Plus |
BO17765.complete Sequence
1372 bp assembled on 2006-10-11
GenBank Submission: FJ634207
> BO17765.complete
GAAGTTATCAGTCGACATGGATTGTAATCCAAGGTTGCAGGTTGGCCAGC
AATTATTCGAATTTTTTACCAAGCCGGAAAAGCCGGATGAGTCTGGTGGC
GATGTAGCAGCTCCGTTGCTCTTGAAGAAATTCGGCAAGTTGATCCGTTA
CAACAACGATGATCTGACCGAGCAGGGTGACTTGACTTTGGCGGCCATCC
CGCGTTACTGGCAAAAATATTTAAAAAGCCAGGGTCTGAAGCTGCGCATC
GATGGCGACGAACTGCTCCCCAGCCCGGTGGACCGCCTGGAGTTGATGGA
GCATTCACGCAAGTGGCGTTTCCCGCTCGCCGAAATCACTGTGCTGAACA
AGGAACGCTACTCTCTGCGTTTCCAGCGCCATCCGATTATTGCACATGTG
CTTAACTCTGTGCTCACGCTGCGCGGCGATTACGGCCGTTCGGCAAATAA
CAACCAATCGCGCACCATATGCTTGCAGTTGCAAGCCGTTGTCGGAGCCG
TCGATGGCGGGCAGGACTTGCGCCACTATCGCTTGCAGCAGCTATACAAG
ATACTGCTGCGCCTGGTTGACTACTCGTCTTGGCGCCTCGTGGAGCCGAA
TGACCGCCAGAAGGACACCATCTGTGTGACTGTCGAGCTGGAGAAATGCT
GCAACGGCAAGCAGCCCGTGGAACATGTGTGCCTCACATGCGGTCCTGTT
TTGGAGCCGATAAATAAGGGCGCCAGCTCATTGACTGTTGACGAGTACTT
AAAGCTGCGCTGCCAGCACATGGAGCTGATGGCCACGCAGCGCTCCGGAA
TGTGTCCGGTACCAATGAGTAGCCTTGATACGCTGACGAAGCGTCTTGCG
GCCGCTGCCGTGATTGTGGATCTCTTTGTGGTGCGCCACTCCAGCGCCGT
GAGTGTGGTGCGCAATGGAGTTGGCATTTGCAAGGGCGCTTCTTACATCT
TGTACAATTCAGCACGTCTGGAGGCGCTGCTGCGCAAATTTAATTATGAG
GTTAACAATTGTGCCTATGAGAAACTGCCACTGCTGGATGAGATCGATCT
CAGCGTTCTAGAGGATGATGTTGACTGGGAGTTGATTTATGGCTACCTCC
TTACCTTTCCGGAGCTAATGGAGTCCATAATGGATCAATTGGACCAGGGT
CATTGCGGTCTCCATCTGCTTGTGCACTATGTTGAGAACCTGGCTGCCGC
CTTCAGTCGCTTCTATTATCATAAGAAGGTCCTTCTTCAGAAGCGCGATG
AACTAATGCCGATCTTGTACGCCAGGATCTACCTGATCAAGGCGGTGAGA
CAGGTCCTGAATACGGCTCTGGCCGTCCTGGGCATAGAACCGGTGGACTA
CGTAGCAAGCTTTCTAGACCAT
BO17765.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8097-RB | 1341 | CG8097-PB | 1..1338 | 17..1354 | 6690 | 100 | Plus |
CG8097-RA | 1341 | CG8097-PA | 1..1338 | 17..1354 | 6690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8097-RB | 1903 | CG8097-RB | 304..1641 | 17..1354 | 6690 | 100 | Plus |
CG8097-RA | 1672 | CG8097-RA | 304..1641 | 17..1354 | 6690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:33:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15583462..15584199 | 17..754 | 3690 | 100 | Plus |
X | 23542271 | X | 15584324..15584641 | 754..1071 | 1590 | 100 | Plus |
X | 23542271 | X | 15584703..15584987 | 1070..1354 | 1425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:33:35 has no hits.
BO17765.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:48 Download gff for
BO17765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8097-RA | 1..1341 | 17..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:29 Download gff for
BO17765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8097-RA | 292..1644 | 8..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:21 Download gff for
BO17765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8097-RA | 304..1641 | 17..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:48 Download gff for
BO17765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8097-RA | 292..1644 | 8..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:57 Download gff for
BO17765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8097-RA | 304..1641 | 17..1356 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:57 Download gff for
BO17765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15583462..15584198 | 17..753 | 100 | -> | Plus |
X | 15584324..15584639 | 754..1069 | 100 | -> | Plus |
X | 15584703..15584987 | 1070..1356 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:21 Download gff for
BO17765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15477495..15478231 | 17..753 | 100 | -> | Plus |
arm_X | 15478357..15478672 | 754..1069 | 100 | -> | Plus |
arm_X | 15478736..15479020 | 1070..1356 | 99 | | Plus |
BO17765.pep Sequence
Translation from 16 to 1372
> BO17765.pep
MDCNPRLQVGQQLFEFFTKPEKPDESGGDVAAPLLLKKFGKLIRYNNDDL
TEQGDLTLAAIPRYWQKYLKSQGLKLRIDGDELLPSPVDRLELMEHSRKW
RFPLAEITVLNKERYSLRFQRHPIIAHVLNSVLTLRGDYGRSANNNQSRT
ICLQLQAVVGAVDGGQDLRHYRLQQLYKILLRLVDYSSWRLVEPNDRQKD
TICVTVELEKCCNGKQPVEHVCLTCGPVLEPINKGASSLTVDEYLKLRCQ
HMELMATQRSGMCPVPMSSLDTLTKRLAAAAVIVDLFVVRHSSAVSVVRN
GVGICKGASYILYNSARLEALLRKFNYEVNNCAYEKLPLLDEIDLSVLED
DVDWELIYGYLLTFPELMESIMDQLDQGHCGLHLLVHYVENLAAAFSRFY
YHKKVLLQKRDELMPILYARIYLIKAVRQVLNTALAVLGIEPVDYVASFL
DH
BO17765.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8097-PB | 446 | CG8097-PB | 1..446 | 1..446 | 2319 | 100 | Plus |
CG8097-PA | 446 | CG8097-PA | 1..446 | 1..446 | 2319 | 100 | Plus |