Clone Sequence Records
BO17767.3prime Sequence
867 bp (774 high quality bases) assembled on 2006-10-13
> BO17767.3prime
ATGGTCTAGAAAGCTTGCACGATTCTTCTGGCGCTTGCGTCGCTTGGGAA
ACACGTAGGAGGAGTGATTTTCTTGATGCCTCGCCTCGGCAGCAGTGGTG
GGTATTTTTTTGCTAGCCAACGTTGCCACCGGCTCAGCCAGTGCCTTGGA
CCTGGCTATGGAGGTTGGCGCTTCGATTGCATCCACCCAAGGCACACCGA
AATCATCCCGCGCCTCCATGTTGACCACGTTTTCGCCGAATGCCTGAACT
GTCACCTCGTTGACGAATTGGATGGCCTCTATGTCCTCGGGCAGCGGGTA
GAAAGTGGAGGCGCGCAGAGGATCCAGCGCAACCAACACCTCGTCTTGGT
TCCGTCGCATCCGAAGCTGTTCAAGCCGTATCTGCTCCTTCATATAACGT
GCATCCCTACACTTTCGATCGACCTCATCCTTCACATATTTCTGGTGCCG
GCGCTCGAAGGTCGCATCGCTCAGTAATTCTGTGTCAATTTTATCCGAAC
TGGGTGGCACTGGGACATCCCGCCACTTGGGTATCTCCAGACTAGGGTTA
TCCGCCAGCAGCTCGTCGGCCTCCTCCAGGAAGAACTCGTTGTCACAGTG
GAACTCCTGATCCTCCCACGTTCTCGTGCTGTACGGAAACGTGGCAGTGC
GGAATCTGGACTGCAGTTTTCCCGATCTCGCCGTTGCCTTGCTGTACGTG
TGGGGTGAACAGTTGTTTAGCGTTTTTCGGATAGTCGAAGTGGTGCTGCT
AACACTGCTATTAGATTGAGGTGTCAGAGGAGTTGCTATTTGTTCAGCTG
CCTTGGATTTCGATTTTGCTGCAGATATTTCCTGGTCCATTGAGGATGTA
ACCGCATTGCTGTGGCG
BO17767.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:10:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10385-PA | 3120 | msl-1-RA | 2270..3117 | 867..19 | 4205 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:50:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-1-RB | 3757 | CG10385-RB | 2645..3492 | 867..19 | 4220 | 99.9 | Minus |
| msl-1-RA | 5021 | CG10385-RA | 2645..3492 | 867..19 | 4220 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18685249..18686087 | 19..857 | 4195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:50:18 has no hits.
BO17767.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:46 Download gff for
BO17767.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10385-PA | 2270..3120 | 18..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:14:28 Download gff for
BO17767.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-1-RA | 2645..3496 | 13..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:15 Download gff for
BO17767.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-1-RA | 2645..3496 | 13..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:15 Download gff for
BO17767.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18685245..18686096 | 13..867 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:14:28 Download gff for
BO17767.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18685245..18686096 | 13..867 | 99 | | Plus |
BO17767.5prime Sequence
824 bp (721 high quality bases) assembled on 2006-10-13
> BO17767.5prime
GAAGTTATCAGTCGACATGGACAAGCGATTCAAGTGGCCGCCCAAAAAGC
GGGCCAACTACTTGGAATCGCCCTATCCCCACATACCGTCGCGTGGCCGC
CAAAGGAATCTGCACGGCCATCCCAATCAGACGCAGCATCTTCATCAGCA
TCCCGGGAAGATCTATGAGCGCCAGCAATATGGCAATGGTCGTGGAGGAC
ATGGCGGGGGTAATAACAACTACCGAAAGCTTTTGCATTCGCTGCCAGCT
GAGCATGGTGGCGGAGCCATGGCTCCTCCTTCCTCCGGCGGAACCGTGTG
TGCCGGCGCCGATATGGTCAAGCTCATCTCGGAGAACAACAACCTGAGGC
GCATGGTTATGTTGAACTTAAACCTGATGCAGGAGCAGACGGACAGCATA
GCGGCCAAGGACAAGGAGCTGGACGACCAAAGCGCTAAGATGAGCGTGGT
GAAGGCGCAGAATGAGGAATTAAAGCAGGCCGTTGCTCAGTTGGAGGCCG
CCAACCAGGAACTATGCAAACAGCTGCGGCGAAAGAACCAGCGAAGGAAC
GACAATGACGACGACGACGATGATCCCCCACTGCCACCTGCTGCCCCGCA
GCAGAAGTTGATACGTTGTCATGCTGAGACGCAAACTGTGTTTCGGGAGC
GGGAACAGGGCACACAAACGATAGATGCGCAGCCTCAATTCGCGAATGCA
CTTCCCAGGGGGTATCAACATGAAGGAGTCTCCCGCTCTGGACCATCACG
CTGGAGCGGTAACGAATCAGCCAGCCACCAAACGCTCGGAGAGCAAAGGC
CGCGGTGAATTCAACGGTAAAAAG
BO17767.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10385-PA | 3120 | msl-1-RA | 1..807 | 17..824 | 3975 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-1-RB | 3757 | CG10385-RB | 375..1182 | 16..824 | 4005 | 99.8 | Plus |
| msl-1-RA | 5021 | CG10385-RA | 375..1182 | 16..824 | 4005 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18687619..18688426 | 824..16 | 3980 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:38:06 has no hits.
BO17767.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:47 Download gff for
BO17767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10385-PA | 1..807 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:41:50 Download gff for
BO17767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-1-RA | 375..1182 | 16..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:33 Download gff for
BO17767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-1-RA | 375..1182 | 16..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:33 Download gff for
BO17767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18687619..18688426 | 16..824 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:41:50 Download gff for
BO17767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18687619..18688426 | 16..824 | 99 | | Minus |
BO17767.complete Sequence
3151 bp assembled on 2010-05-05
GenBank Submission: KX794284
> BO17767.complete
GAAGTTATCAGTCGACATGGACAAGCGATTCAAGTGGCCGCCCAAAAAGC
GGGCCAACTACTTGGAATCGCCCTATCCCCACATACCGTCGCGTGGCCGC
CAAAGGAATCTGCACGGCCATCCCAATCAGACGCAGCATCTTCATCAGCA
TCCCGGGAAGATCTATGAGCGCCAGCAATATGGCAATGGTCGTGGAGGAC
ATGGCGGGGGTAATAACAACTACCGAAAGCTTTTGCATTCGCTGCCAGCT
GAGCATGGTGGCGGAGCCATGGCTCCTCCTTCCTCCGGCGGAACCGTGTG
TGCCGGCGCCGATATGGTCAAGCTCATCTCGGAGAACAACAACCTGAGGC
GCATGGTTATGTTGAACTTAAACCTGATGCAGGAGCAGACGGACAGCATA
GCGGCCAAGGACAAGGAGCTGGACGACCAAAGCGCTAAGATGAGCGTGGT
GAAGGCGCAGAATGAGGAATTAAAGCAGGCCGTTGCTCAGTTGGAGGCCG
CCAACCAGGAACTATGCAAACAGCTGCGGCGAAAGAACCAGCGAAGGAAC
GACAATGACGACGACGACGATGATCCCCCACTGCCACCTGCTGCCCCGCA
GCAGAAGTTGATACGTTGTCATGCTGAGACGCAAACTGTGTTTCGGGAGC
GGGAACAGGGCACACAAACGATAGATGCGCAGCCTCAATTCGCGAATGCA
CTTCCCAGGGGTATCAACATGAAGGAGTCTCCCGCTCTGGACCATCACGC
TGGAGCGGTAACGAATCAGCCAGCCAGCAAACGCTCGGAGAGCAAAGGCC
GCGGTGAATTCAACGGTAAAAAGGTGAGCACGTTTATTCTCCAGCGCATG
AATCAGGACTTCGAGCACCACATCCACGAGCAAACGGAAGTAGCAGAGGA
GCACGAGATGGAGGCACATAAGGAGCAAATATCTCAGGAAGAGGACCAAC
TGGTCGCTGAGGAAGATCATCTGCATATGCAAGAAGTGCACACCGAGGAA
GTCGTTGGAGGCGATATCTTTCATGATGCTTTGGAATCAATTGAAATGGA
AGTGGTCACCGAAGAGCTGGTTGATATGGAGGAGCATGGACAGTCCGTGG
ATGCCAACGGCCATATCGAGGAGGATGATGACGAGGACGACGAAGATGAC
GAGAATAGTGATAAAGACGATGACAGTGAAGAGGATGATTATCCGTGGAT
GCATAGCGATGCGGATGTAAACGCCAGAACTGAGGAAGAGCTCTGGCAGA
ATCAGAATTACCTTTTGGAATTGGACCCGACGGAGGAGAAGACCTGTGCG
CCTTCGGCCCATTCAACTCCCAATCACCAGCAGAAGTCTTCGACACAGGC
AGAGATAAGGAAAGAAGGAAATCAGAATCGGATAACTGAAAAGTTGTTGC
AACTAAAGCCTGAGCCAATGGTAGATGCATTAGAAGCGCCGATTCTCCCG
AAGTGGGTGGCTTTTAAGAAAAAGGATAAGGAACATGAATCAGTCCCCGA
GTCCCCAGAAGTACCCAAGCAGCAGCCGCATCAGGAAGATGCCATCGTTG
ATCATAATGCAATAAAGAATCAGTTGGAAGTTCCCAAGCCGGACTTAAAA
CCGAAGGACCAGCCCAAAGACGAACAGAGGCAGGATGGGCAGCTGGATGT
TCGCGTGGAACCACAAGAGGATGTTCGTAAGGTACAGAAGGAAACTCTGA
AAAGGCAACCAGAGGATGCACCTAAGCACCTTCCGAAAGCGGTAGCCCCA
AAGGTTACGAAAACATCCTCTCGAGAAAGCACGTTGCCCAAGGCAAACAC
CGCTGACATAAAAGACGCTCCCGCTCAAAAAGTAATAGCCAACCATCAGT
CCACCAAGACGCAAACGGATCCTGTAAAAACGCAGCGTTTGCAGGTTAAG
ATCAGGCAGTATGAAATGCATCCTGACATGAGAACCGGCTCCTCCGCCCC
GTCTGATATTCGGAAACAAAAGAACGTTGATCCAGTTTCGACGCCCGAGA
CGAAAACCATTAAAAGTAAAAGTATGTTGGTCAATGATAAAAAGACCACG
TCGGAAACGTCTCAGAGCCCAGATCAAGAAATAGATGTGGAAACAGTTAG
AAGAAAACTGGCGGAACATTTAAAAAAGGAGCTCCTAAGCCAGAGTCATT
CGTCACAGGTTACGCTCAAGAAAATAAGAGAGAGAGTCGCCACAAATCTA
ATATATCCACCACCCAGTGCACCAGTATCCTCAACAACAATAACCCCAGC
GCCTACGCCGTCAACGACACCAACGCCTGGCTCAACGCCACAGCATGCGG
TTACATCCTCAATGGACCAGGAAATATCTGCAGCAAAATCGAAATCCAAG
GCAGCTGAACAAATAGCAACTCCTCTGACACCTCAATCTAATAGCAGTGT
TAGCAGCACCACTTCGACTATCCGAAAAACGCTAAACAACTGTTCACCCC
ACACGTACAGCAAGGCAACGGCGAGATCGGGAAAACTGCAGTCCAGATTC
CGCACTGCCACGTTTCCGTACAGCACGAGAACGTGGGAGGATCAGGAGTT
CCACTGTGACAACGAGTTCTTCCTGGAGGAGGCCGACGAGCTGCTGGCGG
ATAACCCTAGTCTGGAGATACCCAAGTGGCGGGATGTCCCAGTGCCACCC
AGTTCGGATAAAATTGACACAGAATTACTGAGCGATGCGACCTTCGAGCG
CCGGCACCAGAAATATGTGAAGGATGAGGTCGATCGAAAGTGTAGGGATG
CACGTTATATGAAGGAGCAGATACGGCTTGAACAGCTTCGGATGCGACGG
AACCAAGACGAGGTGTTGGTTGCGCTGGATCCTCTGCGCGCCTCCACTTT
CTACCCGCTGCCCGAGGACATAGAGGCCATCCAATTCGTCAACGAGGTGA
CAGTTCAGGCATTCGGCGAAAACGTGGTCAACATGGAGGCGCGGGATGAT
TTCGGTGTGCCTTGGGTGGATGCAATCGAAGCGCCAACCTCCATAGCCAG
GTCCAAGGCACTGGCTGAGCCGGTGGCAACGTTGGCTAGCAAAAAAATAC
CCACCACTGCTGCCGAGGCGAGGCATCAAGAAAATCACTCCTCCTACGTG
TTTCCCAAGCGACGCAAGCGCCAGAAGAATCGTGCAAGCTTTCTAGACCA
T
BO17767.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-1-RB | 3120 | CG10385-PB | 1..3117 | 17..3133 | 15585 | 100 | Plus |
| msl-1-RA | 3120 | CG10385-PA | 1..3117 | 17..3133 | 15585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-1-RB | 3757 | CG10385-RB | 375..3492 | 16..3133 | 15590 | 100 | Plus |
| msl-1-RA | 5021 | CG10385-RA | 375..3492 | 16..3133 | 15590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18685249..18687130 | 3133..1252 | 9410 | 100 | Minus |
| 2L | 23513712 | 2L | 18687187..18688426 | 1255..16 | 6200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:32:56 has no hits.
BO17767.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 18:40:19 Download gff for
BO17767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-1-RA | 372..3488 | 17..3135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:59 Download gff for
BO17767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-1-RA | 376..3492 | 17..3135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:26 Download gff for
BO17767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-1-RA | 376..3492 | 17..3135 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:26 Download gff for
BO17767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18685245..18687126 | 1256..3135 | 99 | <- | Minus |
| 2L | 18687187..18688425 | 17..1255 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:59 Download gff for
BO17767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18685245..18687126 | 1256..3135 | 99 | <- | Minus |
| arm_2L | 18687187..18688425 | 17..1255 | 100 | | Minus |
BO17767.pep Sequence
Translation from 16 to 3151
> BO17767.pep
MDKRFKWPPKKRANYLESPYPHIPSRGRQRNLHGHPNQTQHLHQHPGKIY
ERQQYGNGRGGHGGGNNNYRKLLHSLPAEHGGGAMAPPSSGGTVCAGADM
VKLISENNNLRRMVMLNLNLMQEQTDSIAAKDKELDDQSAKMSVVKAQNE
ELKQAVAQLEAANQELCKQLRRKNQRRNDNDDDDDDPPLPPAAPQQKLIR
CHAETQTVFREREQGTQTIDAQPQFANALPRGINMKESPALDHHAGAVTN
QPASKRSESKGRGEFNGKKVSTFILQRMNQDFEHHIHEQTEVAEEHEMEA
HKEQISQEEDQLVAEEDHLHMQEVHTEEVVGGDIFHDALESIEMEVVTEE
LVDMEEHGQSVDANGHIEEDDDEDDEDDENSDKDDDSEEDDYPWMHSDAD
VNARTEEELWQNQNYLLELDPTEEKTCAPSAHSTPNHQQKSSTQAEIRKE
GNQNRITEKLLQLKPEPMVDALEAPILPKWVAFKKKDKEHESVPESPEVP
KQQPHQEDAIVDHNAIKNQLEVPKPDLKPKDQPKDEQRQDGQLDVRVEPQ
EDVRKVQKETLKRQPEDAPKHLPKAVAPKVTKTSSRESTLPKANTADIKD
APAQKVIANHQSTKTQTDPVKTQRLQVKIRQYEMHPDMRTGSSAPSDIRK
QKNVDPVSTPETKTIKSKSMLVNDKKTTSETSQSPDQEIDVETVRRKLAE
HLKKELLSQSHSSQVTLKKIRERVATNLIYPPPSAPVSSTTITPAPTPST
TPTPGSTPQHAVTSSMDQEISAAKSKSKAAEQIATPLTPQSNSSVSSTTS
TIRKTLNNCSPHTYSKATARSGKLQSRFRTATFPYSTRTWEDQEFHCDNE
FFLEEADELLADNPSLEIPKWRDVPVPPSSDKIDTELLSDATFERRHQKY
VKDEVDRKCRDARYMKEQIRLEQLRMRRNQDEVLVALDPLRASTFYPLPE
DIEAIQFVNEVTVQAFGENVVNMEARDDFGVPWVDAIEAPTSIARSKALA
EPVATLASKKIPTTAAEARHQENHSSYVFPKRRKRQKNRASFLDH
BO17767.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:09:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-1-PB | 1039 | CG10385-PB | 1..1039 | 1..1039 | 5425 | 100 | Plus |
| msl-1-PA | 1039 | CG10385-PA | 1..1039 | 1..1039 | 5425 | 100 | Plus |
| CG13185-PD | 5526 | CG13185-PD | 4662..5242 | 123..722 | 181 | 19.6 | Plus |
| ImpE1-PC | 1616 | CG32356-PC | 590..1228 | 288..894 | 162 | 20.1 | Plus |
| ImpE1-PA | 1616 | CG32356-PA | 590..1228 | 288..894 | 162 | 20.1 | Plus |
