Clone Sequence Records
BO17769.3prime Sequence
332 bp (332 high quality bases) assembled on 2006-10-13
> BO17769.3prime
ATGGTCTAGAAAGCTTGCAGAACGATTGTATTTGCCCCAAATGTGCAGCA
TGAAGACGGAAGCGATGAACAGCAGCGACATGACCAGCACGGGTACGGGA
CCAACTTTGATACCGGGCGAGTCGTCCGTGTAGAAACGCCACATGCCACC
AGTTCCGGCTCCGCCGGGTGCACGGCTCCGGGCCGCTGTGGTGCTGGTGG
TGGTCTTGCGCTGCTTCAGGGTGCTGCCGCCTCCGGATCCGGCGCTACGT
GGCGCCGACAATTTGCTGGGGGAGCGCGATCCGCTGCCCACGGACGTTGA
ACTGGCTGGAGCGGGCATGTCGACTGATAACT
BO17769.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10130-PA | 303 | Sec61beta-RA | 1..300 | 318..19 | 1475 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec61beta-RA | 792 | CG10130-RA | 130..429 | 318..19 | 1485 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:38:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14618958..14619170 | 316..104 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 14619234..14619318 | 103..19 | 410 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:38:16 has no hits.
BO17769.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:49 Download gff for
BO17769.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10130-PA | 1..303 | 15..318 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:41:52 Download gff for
BO17769.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec61beta-RA | 130..434 | 13..318 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:34 Download gff for
BO17769.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec61beta-RA | 130..434 | 13..318 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:34 Download gff for
BO17769.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14618949..14619170 | 104..326 | 98 | -> | Minus |
2R | 14619234..14619323 | 13..103 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:41:52 Download gff for
BO17769.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10506454..10506675 | 104..326 | 98 | -> | Minus |
arm_2R | 10506739..10506828 | 13..103 | 96 | | Minus |
BO17769.5prime Sequence
332 bp (332 high quality bases) assembled on 2006-10-13
> BO17769.5prime
GAAGTTATCAGTCGACATGCCCGCTCCAGCCAGTTCAACGTCCGTGGGCA
GCGGATCGCGCTCCCCCAGCAAATTGTCGGCGCCACGTAGCGCCGGATCC
GGAGGCGGCAGCACCCTGAAGCAGCGCAAGACCACCACCAGCACCACAGC
GGCCCGGAGCCGTGCACCCGGCGGAGCCGGAACTGGTGGCATGTGGCGTT
TCTACACGGACGACTCGCCCGGTATCAAAGTTGGTCCCGTACCCGTGCTG
GTCATGTCGCTGCTGTTCATCGCTTCCGTCTTCATGCTGCACATTTGGGG
CAAATACAATCGTTCTGCAAGCTTTCTAGACC
BO17769.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:11:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10130-PA | 303 | Sec61beta-RA | 1..300 | 17..316 | 1475 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec61beta-RA | 792 | CG10130-RA | 130..429 | 17..316 | 1485 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14618958..14619170 | 19..231 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 14619234..14619318 | 232..316 | 410 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:01:15 has no hits.
BO17769.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:49 Download gff for
BO17769.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10130-PA | 1..303 | 17..320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:34:13 Download gff for
BO17769.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec61beta-RA | 130..434 | 17..322 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:43 Download gff for
BO17769.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec61beta-RA | 130..434 | 17..322 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:43 Download gff for
BO17769.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14618949..14619170 | 9..231 | 98 | -> | Plus |
2R | 14619234..14619323 | 232..322 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:34:13 Download gff for
BO17769.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10506454..10506675 | 9..231 | 98 | -> | Plus |
arm_2R | 10506739..10506828 | 232..322 | 96 | | Plus |
BO17769.complete Sequence
334 bp assembled on 2007-10-17
GenBank Submission: FJ634208
> BO17769.complete
GAAGTTATCAGTCGACATGCCCGCTCCAGCCAGTTCAACGTCCGTGGGCA
GCGGATCGCGCTCCCCCAGCAAATTGTCGGCGCCACGTAGCGCCGGATCC
GGAGGCGGCAGCACCCTGAAGCAGCGCAAGACCACCACCAGCACCACAGC
GGCCCGGAGCCGTGCACCCGGCGGAGCCGGAACTGGTGGCATGTGGCGTT
TCTACACGGACGACTCGCCCGGTATCAAAGTTGGTCCCGTACCCGTGCTG
GTCATGTCGCTGCTGTTCATCGCTTCCGTCTTCATGCTGCACATTTGGGG
CAAATACAATCGTTCTGCAAGCTTTCTAGACCAT
BO17769.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:03:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec61beta-RA | 303 | CG10130-PA | 1..300 | 17..316 | 1485 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:03:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec61beta-RA | 792 | CG10130-RA | 130..429 | 17..316 | 1485 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:03:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14618958..14619170 | 19..231 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 14619234..14619318 | 232..316 | 410 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:03:44 has no hits.
BO17769.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:35 Download gff for
BO17769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec61beta-RA | 1..303 | 17..320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:21 Download gff for
BO17769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec61beta-RA | 174..478 | 17..322 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:10:02 Download gff for
BO17769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec61beta-RA | 130..429 | 17..318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:35 Download gff for
BO17769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec61beta-RA | 174..473 | 17..318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:52 Download gff for
BO17769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec61beta-RA | 130..429 | 17..318 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:52 Download gff for
BO17769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14618957..14619170 | 17..231 | 99 | -> | Plus |
2R | 14619234..14619318 | 232..318 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:10:02 Download gff for
BO17769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10506462..10506675 | 17..231 | 99 | -> | Plus |
arm_2R | 10506739..10506823 | 232..318 | 96 | | Plus |
BO17769.pep Sequence
Translation from 16 to 334
> BO17769.pep
MPAPASSTSVGSGSRSPSKLSAPRSAGSGGGSTLKQRKTTTSTTAARSRA
PGGAGTGGMWRFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS
ASFLDH
BO17769.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec61beta-PA | 100 | CG10130-PA | 1..100 | 1..100 | 514 | 100 | Plus |